# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 309 DUF87 PF01935.12 229 0.00039 11.7 0.1 1 1 2e-05 0.00075 10.8 0.1 29 54 33 56 19 60 0.78 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_22 PF13401.1 131 3e-05 15.7 0.2 1 1 2.4e-06 9e-05 14.1 0.0 3 27 26 50 24 78 0.85 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_15 PF13175.1 415 1.6e-05 15.5 0.0 1 2 2.2e-06 8.1e-05 13.2 0.1 10 44 15 49 12 66 0.86 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_15 PF13175.1 415 1.6e-05 15.5 0.0 2 2 0.027 0.99 -0.2 0.0 372 384 155 167 145 194 0.79 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_17 PF13207.1 121 4.9e-05 15.7 0.4 1 1 2.8e-06 0.0001 14.7 0.4 4 22 32 50 31 264 0.82 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_21 PF13304.1 303 1.6e-12 39.4 0.0 1 2 1.3e-06 4.8e-05 14.9 0.1 1 24 29 52 29 76 0.78 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_21 PF13304.1 303 1.6e-12 39.4 0.0 2 2 5.5e-09 2e-07 22.7 0.0 181 298 96 194 64 199 0.82 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 MobB PF03205.9 140 0.00028 12.1 0.1 1 1 1.6e-05 0.00058 11.1 0.1 5 30 32 56 29 61 0.82 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 G-alpha PF00503.15 389 2.4e-05 14.6 0.0 1 1 8.9e-07 3.3e-05 14.1 0.0 62 84 31 53 14 72 0.89 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 Zeta_toxin PF06414.7 201 2.6e-05 14.9 0.0 1 1 1.4e-06 5.2e-05 13.9 0.0 20 55 31 67 16 82 0.92 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 SMC_N PF02463.14 220 5e-05 14.1 0.2 1 2 6.1e-05 0.0023 8.7 0.1 21 44 23 47 13 67 0.81 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 SMC_N PF02463.14 220 5e-05 14.1 0.2 2 2 0.0021 0.077 3.7 0.0 134 181 132 175 75 210 0.74 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_16 PF13191.1 185 2.8e-07 22.2 2.2 1 1 5.2e-08 1.9e-06 19.4 2.2 16 168 24 204 9 223 0.45 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_23 PF13476.1 202 0.00038 12.3 0.1 1 1 1.9e-05 0.00069 11.4 0.1 11 39 18 47 11 54 0.85 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_18 PF13238.1 129 0.00039 12.3 0.0 1 1 1.8e-05 0.00066 11.5 0.0 3 21 32 50 31 119 0.81 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_29 PF13555.1 62 3.7e-06 18.0 0.1 1 1 2e-07 7.3e-06 17.0 0.1 19 41 24 45 16 60 0.81 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 DUF258 PF03193.11 161 3.1e-06 18.0 0.0 1 1 1.3e-07 4.8e-06 17.3 0.0 22 59 13 51 2 77 0.80 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_30 PF13604.1 196 4.9e-06 17.7 0.0 1 1 2.9e-07 1.1e-05 16.6 0.0 17 50 26 59 14 116 0.79 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 ABC_tran PF00005.22 137 6.3e-33 105.5 0.0 1 1 2.7e-34 1e-32 104.9 0.0 2 136 18 162 17 163 0.93 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_19 PF13245.1 76 1.5e-05 16.2 0.0 1 2 2.6e-06 9.7e-05 13.7 0.0 10 43 27 55 16 67 0.84 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_19 PF13245.1 76 1.5e-05 16.2 0.0 2 2 0.089 3.3 -0.9 0.0 31 62 180 205 177 224 0.73 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_10 PF12846.2 304 4e-06 17.9 0.4 1 3 3.4e-06 0.00013 13.0 0.2 5 22 31 48 28 58 0.87 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_10 PF12846.2 304 4e-06 17.9 0.4 2 3 0.031 1.2 -0.0 0.0 220 266 152 198 110 216 0.75 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_10 PF12846.2 304 4e-06 17.9 0.4 3 3 0.042 1.6 -0.5 0.0 127 160 246 275 226 285 0.69 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_25 PF13481.1 194 0.00035 11.5 1.0 1 3 3.4e-05 0.0013 9.7 0.0 31 50 25 44 8 48 0.88 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_25 PF13481.1 194 0.00035 11.5 1.0 2 3 0.098 3.6 -1.6 0.1 167 188 172 193 164 196 0.85 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_25 PF13481.1 194 0.00035 11.5 1.0 3 3 0.055 2 -0.8 0.2 188 188 193 193 172 291 0.55 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_28 PF13521.1 163 0.00019 12.9 0.1 1 1 2.7e-05 0.001 10.6 0.0 3 22 31 50 29 78 0.72 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/777ef1b7-8e17-4cca-895c-286efadaeac9 # Target file: checkm_output/bins/pm518/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm518/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/777ef1b7-8e17-4cca-895c-286efadaeac9 checkm_output/bins/pm518/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:52 2020 # [ok]