# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 146 Val_tRNA-synt_C PF10458.4 66 0.00045 12.7 0.2 1 2 0.047 3.3 0.4 0.0 41 65 23 47 22 48 0.81 # 34365 # 34802 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.507 1_56 - 146 Val_tRNA-synt_C PF10458.4 66 0.00045 12.7 0.2 2 2 6.5e-05 0.0045 9.5 0.0 1 24 53 76 53 83 0.93 # 34365 # 34802 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.507 1_64 - 253 Terminase_3 PF04466.8 387 0.00017 13.1 0.0 1 1 3.5e-06 0.00024 12.6 0.0 208 260 167 228 154 237 0.89 # 37249 # 38007 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_13 - 196 Methyltransf_4 PF02390.12 197 0.00035 12.0 0.0 1 1 7.4e-06 0.00051 11.5 0.0 14 52 48 86 33 136 0.87 # 8571 # 9158 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eec16e52-32d0-4231-928c-4850b9a117b2 # Target file: checkm_output/bins/pm517/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm517/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eec16e52-32d0-4231-928c-4850b9a117b2 checkm_output/bins/pm517/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:52 2020 # [ok]