# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 7_2 - 246 Methyltransf_32 PF13679.1 141 1.2e-05 17.9 0.0 1 1 1.9e-07 1.9e-05 17.3 0.0 12 70 17 68 9 121 0.82 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 Methyltransf_12 PF08242.7 99 1.8e-05 18.1 0.0 1 1 3.1e-07 3.1e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 188 UPF0020 PF01170.13 180 0.00087 11.8 0.0 1 1 2.9e-05 0.0029 10.1 0.0 18 43 40 65 32 130 0.71 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 RrnaAD PF00398.15 262 3e-74 242.2 6.7 1 1 6.6e-76 3.3e-74 242.1 6.7 3 261 2 242 1 243 0.96 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 RrnaAD PF00398.15 262 1.1e-08 27.3 0.0 1 1 2.8e-10 1.4e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_8 - 176 SSB PF00436.20 104 2.4e-41 132.8 0.4 1 1 3.4e-43 3.4e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=5_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_16 - 188 Methyltransf_18 PF12847.2 112 1.9e-10 34.3 0.0 1 1 7.8e-12 3.9e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 Methyltransf_18 PF12847.2 112 1.3e-09 31.5 0.0 1 1 3.9e-11 1.9e-09 31.0 0.0 2 74 30 98 29 153 0.87 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_7 - 1757 UvrD_C_2 PF13538.1 104 4.4e-08 26.2 1.0 1 2 0.014 1.4 2.1 0.0 6 43 1227 1264 1223 1294 0.75 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 UvrD_C_2 PF13538.1 104 4.4e-08 26.2 1.0 2 2 1.4e-08 1.4e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_28 - 877 DUF87 PF01935.12 229 2.3e-07 23.7 0.0 1 1 6.9e-09 6.9e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 7_2 - 246 Methyltransf_11 PF08241.7 95 5.9e-05 16.5 0.0 1 1 1.2e-06 0.00012 15.5 0.0 2 59 35 92 34 100 0.85 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_7 - 157 N6_N4_Mtase PF01555.13 231 3.7e-26 84.9 0.0 1 2 0.00013 0.013 7.9 0.0 66 114 9 53 2 69 0.78 # 4453 # 4923 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 2_7 - 157 N6_N4_Mtase PF01555.13 231 3.7e-26 84.9 0.0 2 2 2.4e-25 2.4e-23 75.7 0.0 169 228 70 129 55 132 0.90 # 4453 # 4923 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 1_8 - 739 AAA_17 PF13207.1 121 0.00032 14.4 0.0 1 1 8.7e-06 0.00087 13.0 0.0 3 28 189 218 187 303 0.70 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_28 - 877 MobB PF03205.9 140 0.00073 12.2 0.1 1 1 5.4e-05 0.0027 10.3 0.0 4 37 484 516 482 524 0.79 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_8 - 739 MobB PF03205.9 140 0.001 11.7 0.0 1 1 5.3e-05 0.0026 10.4 0.0 7 34 192 219 188 225 0.89 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 7_2 - 246 CMAS PF02353.15 273 0.00017 13.6 0.6 1 1 3e-06 0.0003 12.8 0.0 51 105 18 71 12 99 0.78 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_8 - 739 Zeta_toxin PF06414.7 201 0.00084 11.4 0.0 1 1 3.5e-05 0.0035 9.3 0.0 21 49 190 219 182 236 0.85 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_8 - 739 AAA_16 PF13191.1 185 3.9e-06 19.9 0.0 1 1 4.1e-07 2e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_33 - 123 AAA_16 PF13191.1 185 0.0013 11.6 0.1 1 1 4.6e-05 0.0023 10.8 0.1 22 48 86 112 80 119 0.88 # 32897 # 33265 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_16 - 188 Methyltransf_25 PF13649.1 101 0.00012 15.3 0.0 1 1 1.8e-06 0.00018 14.8 0.0 1 101 54 142 54 142 0.81 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 PCMT PF01135.14 210 7.7e-07 21.7 0.0 1 1 1.6e-08 1.6e-06 20.7 0.0 58 122 14 75 2 87 0.83 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_8 - 739 TraG-D_C PF12696.2 128 7.7e-21 67.2 0.0 1 1 1.4e-22 1.4e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_33 - 123 KTI12 PF08433.5 270 0.00085 11.4 0.1 1 1 1.4e-05 0.0014 10.7 0.1 5 30 92 117 91 120 0.87 # 32897 # 33265 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_16 - 188 Methyltransf_26 PF13659.1 117 4.7e-14 45.4 0.0 1 1 2.4e-15 7.9e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 Methyltransf_26 PF13659.1 117 4.5e-09 29.3 0.0 1 1 2.2e-10 7.4e-09 28.6 0.0 2 83 31 106 30 200 0.81 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_7 - 157 Methyltransf_26 PF13659.1 117 3.2e-06 20.1 0.0 1 1 1.5e-07 4.9e-06 19.5 0.0 4 45 96 136 93 152 0.82 # 4453 # 4923 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 1_7 - 1757 AAA_30 PF13604.1 196 8.1e-45 145.7 13.9 1 3 0.047 2.3 0.6 0.0 41 86 223 269 218 280 0.84 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 8.1e-45 145.7 13.9 2 3 1.5e-05 0.00076 12.0 3.0 7 132 420 539 416 561 0.82 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 8.1e-45 145.7 13.9 3 3 8.1e-44 4.1e-42 136.9 1.5 1 186 968 1156 968 1160 0.94 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 739 AAA_30 PF13604.1 196 0.00062 12.3 0.0 1 1 2.6e-05 0.0013 11.2 0.0 21 57 188 224 180 230 0.85 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 1 2 2e-06 0.0002 13.7 0.0 39 63 477 505 464 508 0.84 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 2 2 0.015 1.5 1.1 0.0 75 166 531 626 530 669 0.82 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_16 - 188 MTS PF05175.9 170 8.7e-10 31.1 0.0 1 1 2.4e-11 1.2e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 MTS PF05175.9 170 6.2e-08 25.1 0.0 1 1 2e-09 1e-07 24.4 0.0 24 118 22 113 9 121 0.85 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 Methyltrans_SAM PF10672.4 286 0.00072 11.3 0.0 1 1 9.9e-06 0.00099 10.9 0.0 196 261 113 173 93 180 0.78 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 188 Met_10 PF02475.11 200 0.00087 11.8 0.0 1 1 1.1e-05 0.0011 11.4 0.0 98 189 47 132 29 145 0.78 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_7 - 1757 AAA_19 PF13245.1 76 1.7e-07 23.9 2.0 1 1 1.1e-08 5.6e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_33 - 123 AAA_19 PF13245.1 76 0.00067 12.3 0.0 1 1 2.2e-05 0.0011 11.7 0.0 13 37 91 115 82 122 0.78 # 32897 # 33265 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_28 - 877 AAA_10 PF12846.2 304 4.1e-49 160.5 0.0 1 1 1.5e-50 7.4e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_8 - 739 AAA_10 PF12846.2 304 1.5e-10 33.9 0.0 1 1 6.1e-11 3.1e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 7_2 - 246 NodS PF05401.6 201 2.6e-08 26.4 0.0 1 1 4.2e-10 4.2e-08 25.7 0.0 41 120 27 106 7 116 0.86 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 7_2 - 246 Methyltransf_31 PF13847.1 152 1.1e-07 24.5 0.1 1 1 3.1e-09 1.5e-07 24.0 0.1 2 76 28 97 27 213 0.87 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 Methyltransf_31 PF13847.1 152 3.4e-07 22.9 0.0 1 1 8.3e-09 4.2e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 TRM13 PF05206.9 259 0.00013 14.1 0.1 1 1 2.1e-06 0.00021 13.5 0.1 4 67 15 78 12 101 0.79 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 7_2 - 246 DOT1 PF08123.8 205 3.3e-05 16.2 0.2 1 1 8.2e-07 8.2e-05 14.9 0.0 28 88 15 73 11 100 0.79 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_8 - 739 TrwB_AAD_bind PF10412.4 386 3.7e-150 492.7 0.0 1 1 9e-152 4.5e-150 492.4 0.0 2 386 172 561 171 561 0.99 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_28 - 877 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 1 2 4.8e-08 2.4e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 2 2 0.054 2.7 -0.7 0.1 261 317 714 770 706 773 0.92 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_7 - 1757 AAA_11 PF13086.1 236 0.00021 13.8 0.0 1 1 2.1e-06 0.00021 13.8 0.0 2 75 969 1039 968 1059 0.81 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 739 T4SS-DNA_transf PF02534.9 469 7.3e-10 30.8 0.0 1 1 3.8e-11 1.9e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_28 - 877 T4SS-DNA_transf PF02534.9 469 0.00032 12.2 0.0 1 2 0.0047 0.23 2.8 0.0 105 182 534 605 471 624 0.82 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 T4SS-DNA_transf PF02534.9 469 0.00032 12.2 0.0 2 2 0.00023 0.011 7.1 0.0 319 378 712 770 663 772 0.91 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 7_2 - 246 TIGR00755 TIGR00755 256 1.6e-44 144.7 2.8 1 1 3.9e-46 1.9e-44 144.4 2.8 5 227 5 221 1 235 0.88 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 TIGR00755 TIGR00755 256 3.6e-09 28.8 0.0 1 1 9.8e-11 4.9e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_28 - 877 Pox_A32 PF04665.7 241 0.00074 11.7 0.1 1 1 2.3e-05 0.0023 10.1 0.0 7 38 474 505 470 520 0.85 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 7_2 - 246 Methyltransf_23 PF13489.1 161 1e-06 21.5 0.1 1 1 2.9e-08 2.9e-06 20.0 0.1 7 60 16 85 9 225 0.83 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 7_2 - 246 Methyltransf_4 PF02390.12 197 0.00014 13.8 0.1 1 1 2.7e-06 0.00027 12.9 0.0 17 52 27 62 3 102 0.72 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/622c1ee3-5c0e-4d20-a5c3-03ac9a42a79b # Target file: checkm_output/bins/pm510/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm510/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/622c1ee3-5c0e-4d20-a5c3-03ac9a42a79b checkm_output/bins/pm510/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:48 2020 # [ok]