# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_63 - 755 UPF0020 PF01170.13 180 0.00011 14.8 0.0 1 2 0.003 0.34 3.5 0.0 28 50 510 532 507 568 0.87 # 63003 # 65267 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_63 - 755 UPF0020 PF01170.13 180 0.00011 14.8 0.0 2 2 8.2e-05 0.0092 8.6 0.0 86 116 637 667 632 671 0.91 # 63003 # 65267 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_54 - 399 MipZ PF09140.6 261 6.8e-09 28.2 0.1 1 2 4.6e-05 0.0051 8.9 0.0 1 51 109 164 109 187 0.77 # 56162 # 57358 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_54 - 399 MipZ PF09140.6 261 6.8e-09 28.2 0.1 2 2 1.4e-07 1.6e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 56162 # 57358 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_13 - 163 SSB PF00436.20 104 4e-43 138.6 0.3 1 1 4.6e-45 5.2e-43 138.3 0.3 1 100 6 109 6 113 0.96 # 16169 # 16657 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_63 - 755 DNA_methylase PF00145.12 335 9.4e-39 126.4 0.0 1 3 3e-25 3.4e-23 75.3 0.0 5 119 8 135 6 145 0.92 # 63003 # 65267 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_63 - 755 DNA_methylase PF00145.12 335 9.4e-39 126.4 0.0 2 3 4.1e-15 4.6e-13 42.0 0.0 136 308 192 406 187 414 0.52 # 63003 # 65267 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_63 - 755 DNA_methylase PF00145.12 335 9.4e-39 126.4 0.0 3 3 0.0011 0.12 4.4 0.0 312 334 441 463 428 464 0.88 # 63003 # 65267 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_9 - 2256 Helicase_C PF00271.26 78 7.4e-09 28.5 0.0 1 1 1.6e-10 1.8e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 5587 # 12354 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_45 - 352 ArsA_ATPase PF02374.10 305 4.4e-05 15.7 0.0 1 1 1.5e-06 8.2e-05 14.8 0.0 8 47 24 65 18 78 0.80 # 47128 # 48183 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_54 - 399 ArsA_ATPase PF02374.10 305 0.00049 12.2 0.0 1 1 2.3e-05 0.0013 10.8 0.0 4 52 111 166 108 255 0.74 # 56162 # 57358 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_45 - 352 PhoH PF02562.11 205 6.1e-05 15.4 0.0 1 1 8.7e-07 9.7e-05 14.7 0.0 24 55 22 53 7 72 0.88 # 47128 # 48183 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_20 - 640 AAA_13 PF13166.1 712 0.014 6.8 12.0 1 2 1.3e-05 0.0014 10.1 7.4 377 466 198 282 152 283 0.75 # 23762 # 25681 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_20 - 640 AAA_13 PF13166.1 712 0.014 6.8 12.0 2 2 0.085 9.5 -2.5 0.1 373 397 568 592 531 632 0.51 # 23762 # 25681 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 3.7e-22 2e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 56162 # 57358 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_45 - 352 CbiA PF01656.18 195 2e-15 49.7 0.0 1 1 6.2e-17 3.5e-15 49.0 0.0 2 142 20 220 19 264 0.80 # 47128 # 48183 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_69 - 455 KaiC PF06745.8 227 2.6e-06 19.7 0.0 1 1 5.5e-08 6.2e-06 18.5 0.0 4 66 185 253 183 281 0.87 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_9 - 2256 N6_Mtase PF02384.11 311 2.8e-10 32.8 0.0 1 1 3.3e-11 3.6e-09 29.1 0.0 93 249 145 291 73 296 0.76 # 5587 # 12354 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 399 AAA_31 PF13614.1 157 6e-07 22.6 0.0 1 2 0.0013 0.05 6.6 0.0 2 63 110 176 109 222 0.75 # 56162 # 57358 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_54 - 399 AAA_31 PF13614.1 157 6e-07 22.6 0.0 2 2 9e-06 0.00034 13.7 0.0 108 138 235 265 231 277 0.85 # 56162 # 57358 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_45 - 352 AAA_31 PF13614.1 157 3.3e-05 16.9 0.0 1 1 1.8e-06 6.6e-05 15.9 0.0 1 76 17 91 17 113 0.79 # 47128 # 48183 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_69 - 455 AAA_31 PF13614.1 157 6.9e-05 15.9 0.0 1 1 4.4e-06 0.00016 14.7 0.0 5 43 210 249 208 260 0.89 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_69 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 1 3 0.088 9.9 -0.9 0.0 46 79 134 172 102 181 0.69 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_69 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 2 3 3.9e-05 0.0044 10.0 0.0 2 42 209 248 208 327 0.60 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_69 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 3 3 0.036 4 0.4 0.1 88 123 350 383 331 394 0.72 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_69 - 455 DnaB_C PF03796.10 259 1.2e-109 358.2 0.2 1 1 1.6e-111 1.8e-109 357.6 0.2 1 257 188 445 188 447 0.98 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_9 - 2256 Methyltransf_26 PF13659.1 117 1.7e-09 30.8 0.1 1 1 2.9e-10 1.6e-08 27.7 0.0 5 116 116 225 113 226 0.79 # 5587 # 12354 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_63 - 755 Methyltransf_26 PF13659.1 117 1e-05 18.7 0.0 1 1 5.2e-07 2.9e-05 17.2 0.0 1 83 511 670 511 725 0.69 # 63003 # 65267 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_69 - 455 FtsK_SpoIIIE PF01580.13 205 0.0003 13.3 0.2 1 2 6.7e-05 0.0076 8.8 0.0 36 67 204 235 180 243 0.81 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_69 - 455 FtsK_SpoIIIE PF01580.13 205 0.0003 13.3 0.2 2 2 0.012 1.3 1.4 0.1 71 124 319 366 313 400 0.74 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_9 - 2256 Eco57I PF07669.6 106 4.4e-05 16.9 0.0 1 1 1.6e-06 0.00018 14.9 0.0 3 101 174 271 172 276 0.87 # 5587 # 12354 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_69 - 455 AAA_19 PF13245.1 76 0.0006 12.7 0.0 1 1 1.5e-05 0.0017 11.2 0.0 9 48 205 241 198 264 0.82 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_18 - 383 TIGR00344 TIGR00344 847 1.7e-05 15.9 0.5 1 1 2.2e-07 2.5e-05 15.4 0.5 681 777 162 255 156 269 0.77 # 22212 # 23360 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_20 - 640 Kinesin-relat_1 PF12711.2 86 0.0019 11.7 5.3 1 2 0.004 0.45 4.1 0.5 8 42 196 230 191 236 0.81 # 23762 # 25681 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_20 - 640 Kinesin-relat_1 PF12711.2 86 0.0019 11.7 5.3 2 2 0.00015 0.017 8.6 0.4 7 37 251 281 246 284 0.91 # 23762 # 25681 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_63 - 755 MethyltransfD12 PF02086.10 260 1.3e-57 188.2 0.0 1 1 1.5e-59 1.7e-57 187.8 0.0 1 248 493 724 493 736 0.94 # 63003 # 65267 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_13 - 163 tRNA_anti-codon PF01336.20 75 0.0007 12.5 0.0 1 1 1e-05 0.0011 11.9 0.0 31 61 58 92 53 112 0.82 # 16169 # 16657 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_69 - 455 AAA_25 PF13481.1 194 3.7e-15 48.9 0.1 1 1 6.3e-17 7.1e-15 48.0 0.1 13 190 187 368 174 372 0.83 # 69905 # 71269 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_9 - 2256 SNF2_N PF00176.18 299 6.5e-18 57.5 0.0 1 1 1.7e-19 1.9e-17 56.0 0.0 27 293 849 1262 835 1268 0.85 # 5587 # 12354 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a39d5587-13e3-44d3-963c-0f03dd2b7bd4 # Target file: checkm_output/bins/pm502/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm502/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a39d5587-13e3-44d3-963c-0f03dd2b7bd4 checkm_output/bins/pm502/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:45 2020 # [ok]