# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 425 cobW PF02492.14 178 9.9e-06 14.4 0.5 1 1 4.5e-06 3.6e-05 12.6 0.3 2 22 44 64 43 76 0.84 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 UvrD_C_2 PF13538.1 104 2.2e-30 94.3 0.0 1 1 5e-31 4e-30 93.5 0.0 1 104 291 395 291 395 0.93 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_22 PF13401.1 131 2.1e-05 14.1 0.8 1 1 1.3e-05 0.0001 11.8 0.7 5 27 43 65 37 155 0.76 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 SRP54 PF00448.17 196 4.1e-05 12.4 0.2 1 2 3.3e-05 0.00027 9.8 0.1 2 36 43 77 42 88 0.89 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 SRP54 PF00448.17 196 4.1e-05 12.4 0.2 2 2 0.031 0.24 0.1 0.0 37 66 182 211 167 238 0.62 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_17 PF13207.1 121 0.00016 11.9 2.3 1 1 3.1e-05 0.00025 11.3 0.8 3 17 46 60 44 70 0.90 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 MobB PF03205.9 140 1.6e-05 14.0 0.4 1 1 4.7e-06 3.7e-05 12.8 0.4 3 32 45 74 43 82 0.88 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 PhoH PF02562.11 205 2.3e-05 13.0 0.3 1 2 0.00013 0.0011 7.6 0.1 6 35 29 58 26 92 0.91 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 PhoH PF02562.11 205 2.3e-05 13.0 0.3 2 2 0.0028 0.023 3.2 0.0 118 161 118 161 109 197 0.77 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 T2SE PF00437.15 272 1.5e-05 13.3 0.3 1 1 3.9e-06 3.1e-05 12.2 0.3 123 155 38 69 21 76 0.78 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 SMC_N PF02463.14 220 8.7e-05 11.1 0.2 1 1 2.6e-05 0.00021 9.9 0.2 18 48 36 66 24 73 0.83 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 Arch_ATPase PF01637.13 234 2.5e-05 13.4 0.0 1 2 2.3e-05 0.00018 10.5 0.0 19 59 41 81 34 130 0.83 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 Arch_ATPase PF01637.13 234 2.5e-05 13.4 0.0 2 2 0.031 0.25 0.3 0.0 91 170 297 375 265 406 0.77 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_16 PF13191.1 185 7.8e-07 18.5 0.2 1 2 9.2e-07 7.4e-06 15.4 0.1 28 54 46 72 38 102 0.80 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_16 PF13191.1 185 7.8e-07 18.5 0.2 2 2 0.058 0.47 -0.3 0.0 158 185 338 366 320 366 0.90 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_23 PF13476.1 202 9.3e-05 12.1 1.0 1 1 1.7e-05 0.00013 11.6 0.1 18 40 41 63 25 69 0.87 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_18 PF13238.1 129 2.5e-05 13.9 0.2 1 1 8.5e-06 6.8e-05 12.6 0.1 2 18 46 62 46 110 0.90 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_2 - 319 Ribosomal_S13 PF00416.17 107 8.7e-05 12.4 1.3 1 2 0.051 0.4 0.6 0.1 19 34 133 148 128 186 0.68 # 2233 # 3189 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.424 1_2 - 319 Ribosomal_S13 PF00416.17 107 8.7e-05 12.4 1.3 2 2 9e-05 0.00072 9.4 0.1 19 42 197 220 182 281 0.84 # 2233 # 3189 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.424 1_3 - 425 AAA_14 PF13173.1 128 1.7e-05 14.1 0.7 1 1 1.1e-05 8.7e-05 11.8 0.2 1 24 41 64 41 142 0.62 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_2 - 319 TIGR00084 TIGR00084 192 1.6e-07 20.0 0.0 1 2 0.0012 0.0096 4.4 0.0 78 126 102 148 89 159 0.83 # 2233 # 3189 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.424 1_2 - 319 TIGR00084 TIGR00084 192 1.6e-07 20.0 0.0 2 2 2.4e-06 1.9e-05 13.2 0.0 74 124 161 210 152 216 0.89 # 2233 # 3189 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.424 1_3 - 425 AAA_29 PF13555.1 62 3.1e-06 16.1 0.1 1 1 9.4e-07 7.5e-06 14.9 0.1 20 50 39 69 24 75 0.80 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 UvrD_C PF13361.1 351 1e-06 17.7 0.0 1 1 2.9e-07 2.3e-06 16.5 0.0 291 350 351 398 313 399 0.88 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 MMR_HSR1 PF01926.18 116 1.4e-05 14.4 0.4 1 1 5.4e-06 4.3e-05 12.8 0.4 3 22 46 65 44 161 0.79 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 DUF258 PF03193.11 161 2.3e-08 22.7 0.3 1 2 2.4e-08 1.9e-07 19.7 0.1 28 60 35 76 19 105 0.69 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 DUF258 PF03193.11 161 2.3e-08 22.7 0.3 2 2 0.021 0.17 0.4 0.0 43 60 260 277 247 303 0.83 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 NTPase_1 PF03266.10 168 2.4e-07 19.9 0.5 1 1 7.4e-08 5.9e-07 18.7 0.5 3 29 46 72 44 98 0.90 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_30 PF13604.1 196 1.3e-39 125.1 0.0 1 1 2.5e-40 2e-39 124.5 0.0 1 179 27 206 27 213 0.89 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_19 PF13245.1 76 2.8e-20 61.3 1.0 1 1 7.1e-21 5.7e-20 60.3 1.0 2 76 35 101 34 101 0.91 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 Helicase_RecD PF05127.9 177 6.5e-08 21.7 0.7 1 1 6.9e-08 5.5e-07 18.7 0.7 1 112 46 141 46 165 0.79 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_10 PF12846.2 304 2.9e-05 12.9 0.0 1 1 5.6e-06 4.4e-05 12.3 0.0 4 55 45 97 42 143 0.82 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 Viral_helicase1 PF01443.13 234 5.3e-12 35.0 0.3 1 2 3e-07 2.4e-06 16.5 0.5 2 102 46 160 45 234 0.67 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 Viral_helicase1 PF01443.13 234 5.3e-12 35.0 0.3 2 2 8.6e-07 6.9e-06 15.0 0.0 184 233 349 395 314 396 0.82 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 DUF2075 PF09848.4 352 7.4e-06 14.4 0.1 1 2 7e-06 5.6e-05 11.5 0.0 2 25 43 66 42 128 0.79 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 DUF2075 PF09848.4 352 7.4e-06 14.4 0.1 2 2 0.034 0.27 -0.7 0.0 271 298 346 371 330 410 0.75 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 TrwB_AAD_bind PF10412.4 386 1.6e-06 16.2 0.4 1 1 4.9e-07 3.9e-06 14.9 0.1 6 56 33 83 29 92 0.83 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_11 PF13086.1 236 4e-11 32.2 1.8 1 2 2.4e-09 1.9e-08 23.4 0.2 2 70 28 87 27 102 0.89 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_11 PF13086.1 236 4e-11 32.2 1.8 2 2 0.00014 0.0012 7.8 0.1 192 231 119 160 108 161 0.78 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 ArgK PF03308.11 267 4.3e-07 18.2 0.2 1 1 8.6e-08 6.9e-07 17.5 0.2 1 60 13 73 13 80 0.80 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 PIF1 PF05970.9 364 2.3e-07 19.3 0.1 1 1 8.6e-08 6.9e-07 17.7 0.1 8 122 34 139 27 145 0.73 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 UvrD-helicase PF00580.16 315 9e-06 14.4 2.3 1 2 3.9e-06 3.1e-05 12.6 0.6 2 45 29 73 28 96 0.81 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 UvrD-helicase PF00580.16 315 9e-06 14.4 2.3 2 2 0.014 0.11 0.9 0.0 278 294 139 157 125 158 0.76 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 NACHT PF05729.7 166 6.7e-05 11.9 0.3 1 1 2.2e-05 0.00018 10.6 0.1 2 29 44 71 43 102 0.86 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_25 PF13481.1 194 6.1e-05 11.8 0.0 1 1 1.3e-05 0.00011 11.0 0.0 33 55 42 64 22 135 0.80 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_3 - 425 AAA_28 PF13521.1 163 1.1e-06 18.0 0.0 1 1 2.4e-07 1.9e-06 17.3 0.0 3 84 46 131 44 151 0.58 # 3146 # 4420 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ffe56dd1-9e28-4075-83ef-fec832c6ef3a # Target file: checkm_output/bins/pm50/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm50/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ffe56dd1-9e28-4075-83ef-fec832c6ef3a checkm_output/bins/pm50/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:41 2020 # [ok]