# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 188 Methyltransf_12 PF08242.7 99 3.3e-05 17.9 0.0 1 1 3.7e-07 5.8e-05 17.1 0.0 1 99 55 144 55 144 0.84 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 6_3 - 519 UPF0020 PF01170.13 180 2.5e-09 30.5 0.1 1 1 2.5e-10 1.9e-08 27.6 0.0 11 117 202 304 195 311 0.76 # 341 # 1897 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_14 - 228 UPF0020 PF01170.13 180 2e-05 17.7 0.0 1 2 0.00058 0.046 6.8 0.0 103 119 17 33 4 88 0.73 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_14 - 228 UPF0020 PF01170.13 180 2e-05 17.7 0.0 2 2 0.00012 0.0097 9.0 0.0 28 54 163 189 158 221 0.67 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_6 - 232 cobW PF02492.14 178 0.0008 12.4 0.0 1 1 8.3e-06 0.0013 11.7 0.0 3 21 39 57 37 80 0.85 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_23 - 188 RrnaAD PF00398.15 262 7.6e-08 25.2 0.0 1 1 6e-10 9.5e-08 24.9 0.0 9 113 29 128 24 148 0.87 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 8_8 - 187 IstB_IS21 PF01695.12 178 1.8e-46 151.3 0.0 1 2 0.071 5.6 -0.1 0.0 64 96 25 56 24 60 0.64 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 IstB_IS21 PF01695.12 178 1.8e-46 151.3 0.0 2 2 6.6e-48 5.2e-46 149.8 0.0 1 122 56 178 56 184 0.96 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 3_11 - 62 IstB_IS21 PF01695.12 178 6.3e-13 42.0 0.1 1 1 9.7e-15 7.6e-13 41.8 0.1 143 178 1 37 1 37 0.95 # 12035 # 12220 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.500 1_10 - 389 MipZ PF09140.6 261 6.8e-06 18.8 0.4 1 2 3.5e-06 0.00056 12.6 0.0 2 47 108 153 107 157 0.87 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_10 - 389 MipZ PF09140.6 261 6.8e-06 18.8 0.4 2 2 0.0011 0.18 4.4 0.0 88 134 224 270 197 292 0.84 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_25 - 180 SSB PF00436.20 104 4.4e-41 132.6 0.4 1 1 3.5e-43 5.6e-41 132.2 0.4 1 101 6 109 6 112 0.96 # 18718 # 19257 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_23 - 188 Methyltransf_18 PF12847.2 112 2.5e-10 34.5 0.0 1 1 3.4e-12 5.3e-10 33.5 0.0 4 109 53 146 50 148 0.88 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_46 - 1757 UvrD_C_2 PF13538.1 104 2e-07 24.7 0.7 1 2 0.013 2 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_46 - 1757 UvrD_C_2 PF13538.1 104 2e-07 24.7 0.7 2 2 4.2e-08 6.7e-06 19.8 0.2 3 102 1341 1444 1339 1446 0.77 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_6 - 232 DUF87 PF01935.12 229 0.00036 13.9 0.0 1 2 1.7e-05 0.0027 11.1 0.1 26 44 39 57 21 59 0.91 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 DUF87 PF01935.12 229 0.00036 13.9 0.0 2 2 0.027 4.2 0.6 0.0 136 184 128 196 95 215 0.65 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 NB-ARC PF00931.17 287 0.00096 11.6 0.1 1 1 9.7e-06 0.0015 10.9 0.1 18 37 35 54 24 65 0.87 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 AAA_22 PF13401.1 131 3.7e-06 20.7 0.2 1 2 2.6e-05 0.002 11.8 0.0 5 22 103 120 99 137 0.83 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 AAA_22 PF13401.1 131 3.7e-06 20.7 0.2 2 2 0.002 0.16 5.7 0.0 88 99 154 176 128 183 0.67 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 AAA_22 PF13401.1 131 3.7e-05 17.4 0.7 1 1 3.4e-06 0.00027 14.7 0.7 3 25 35 57 31 207 0.82 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_15 PF13175.1 415 0.00039 13.1 0.0 1 2 4e-05 0.0063 9.1 0.0 25 46 34 60 9 93 0.72 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_15 PF13175.1 415 0.00039 13.1 0.0 2 2 0.0056 0.88 2.0 0.0 372 414 164 205 140 205 0.89 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_14 - 228 N6_N4_Mtase PF01555.13 231 1e-36 120.1 0.0 1 2 1.2e-15 1.8e-13 44.0 0.0 1 114 21 124 21 137 0.89 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_14 - 228 N6_N4_Mtase PF01555.13 231 1e-36 120.1 0.0 2 2 5.4e-25 8.5e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_6 - 232 AAA_17 PF13207.1 121 4.4e-05 17.9 0.2 1 1 1.3e-06 6.9e-05 17.2 0.2 2 19 39 56 38 219 0.85 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_45 - 742 AAA_17 PF13207.1 121 0.00053 14.4 0.0 1 1 2.6e-05 0.0014 13.0 0.0 3 28 189 218 187 303 0.70 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 8_8 - 187 AAA_17 PF13207.1 121 0.0014 13.0 0.1 1 1 0.0001 0.0055 11.1 0.0 2 17 105 120 104 161 0.89 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 AAA_21 PF13304.1 303 3.7e-13 43.6 0.0 1 2 1.9e-06 0.0003 14.3 0.1 1 22 38 59 38 71 0.87 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_21 PF13304.1 303 3.7e-13 43.6 0.0 2 2 3.1e-10 4.9e-08 26.8 0.0 234 301 141 205 134 206 0.96 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 MobB PF03205.9 140 0.00042 13.6 0.0 1 1 9.6e-06 0.00076 12.8 0.0 3 20 39 56 37 108 0.84 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_45 - 742 MobB PF03205.9 140 0.0018 11.6 0.0 1 1 5.3e-05 0.0042 10.4 0.0 7 34 192 219 188 225 0.89 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_10 - 389 ArsA_ATPase PF02374.10 305 2.8e-06 20.1 0.4 1 2 1.7e-06 0.00026 13.6 0.1 9 36 115 142 109 151 0.89 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_10 - 389 ArsA_ATPase PF02374.10 305 2.8e-06 20.1 0.4 2 2 0.0011 0.18 4.3 0.0 123 136 231 244 221 251 0.84 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 8_8 - 187 PhoH PF02562.11 205 8.3e-08 25.2 0.2 1 2 0.029 4.5 -0.1 0.0 50 110 7 66 1 77 0.63 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 PhoH PF02562.11 205 8.3e-08 25.2 0.2 2 2 2.3e-09 3.6e-07 23.1 0.0 11 48 94 131 83 144 0.80 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 SMC_N PF02463.14 220 4.5e-09 29.4 0.0 1 1 2.3e-09 3.7e-07 23.1 0.0 24 212 36 216 24 220 0.76 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_10 - 389 VirC1 PF07015.6 231 0.0001 14.9 0.1 1 2 0.00028 0.044 6.3 0.0 4 42 109 147 107 154 0.91 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_10 - 389 VirC1 PF07015.6 231 0.0001 14.9 0.1 2 2 0.0003 0.047 6.2 0.1 84 139 235 290 222 312 0.77 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 8_8 - 187 Arch_ATPase PF01637.13 234 0.0011 12.2 0.0 1 1 2e-05 0.0032 10.7 0.0 8 37 90 119 87 141 0.79 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_45 - 742 AAA_16 PF13191.1 185 6.1e-06 19.9 0.0 1 1 6.1e-07 3.2e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_6 - 232 AAA_16 PF13191.1 185 9.6e-06 19.2 0.4 1 1 4.2e-07 2.2e-05 18.0 0.4 18 56 30 69 23 200 0.73 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 AAA_16 PF13191.1 185 6.9e-05 16.4 1.3 1 2 0.08 4.2 0.8 0.2 112 142 15 47 3 97 0.57 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 AAA_16 PF13191.1 185 6.9e-05 16.4 1.3 2 2 5e-06 0.00026 14.5 0.1 14 41 95 119 84 151 0.78 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 AAA_23 PF13476.1 202 0.00079 13.3 0.0 1 1 7.1e-06 0.0011 12.8 0.0 19 39 36 56 18 94 0.84 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_18 PF13238.1 129 6.7e-05 16.8 0.7 1 1 3e-06 0.00048 14.0 0.7 1 19 39 57 39 214 0.88 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_13 PF13166.1 712 0.0026 9.7 0.0 1 2 3.4e-05 0.0054 8.7 0.0 20 42 40 62 25 94 0.83 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_13 PF13166.1 712 0.0026 9.7 0.0 2 2 0.093 15 -2.7 0.0 525 570 159 202 155 205 0.87 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_10 - 389 CbiA PF01656.18 195 1.6e-36 119.1 0.0 1 1 1.3e-38 2.1e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_6 - 232 KaiC PF06745.8 227 0.00076 12.2 0.1 1 1 9.4e-06 0.0015 11.2 0.1 7 35 25 52 22 66 0.88 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 AAA_14 PF13173.1 128 1.1e-05 18.8 0.0 1 1 3e-07 2.4e-05 17.8 0.0 2 74 102 177 101 181 0.74 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 AAA_14 PF13173.1 128 0.00086 12.8 0.0 1 1 2.5e-05 0.0019 11.6 0.0 2 41 36 75 35 131 0.63 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_29 PF13555.1 62 4.3e-06 19.8 0.1 1 1 1e-07 8e-06 18.9 0.1 16 42 30 55 24 71 0.78 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 AAA_29 PF13555.1 62 0.00076 12.6 0.0 1 1 1.7e-05 0.0013 11.8 0.0 18 59 97 139 89 141 0.72 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 AAA PF00004.24 132 5.3e-07 23.5 0.0 1 1 5.8e-09 9.2e-07 22.7 0.0 1 68 105 174 105 177 0.82 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 Bac_DnaA PF00308.13 219 6.7e-07 22.7 0.0 1 1 6e-09 9.5e-07 22.2 0.0 37 109 105 176 75 178 0.84 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 Sigma54_activat PF00158.21 168 0.0005 13.1 0.0 1 1 6.3e-06 0.001 12.1 0.0 18 50 98 130 82 179 0.79 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 MMR_HSR1 PF01926.18 116 0.00029 14.3 0.2 1 1 3.2e-06 0.0005 13.6 0.2 2 20 39 57 38 201 0.91 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 6_3 - 519 N6_Mtase PF02384.11 311 4.7e-118 387.3 1.0 1 1 7.9e-120 6.3e-118 386.9 1.0 2 310 171 479 170 480 0.97 # 341 # 1897 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_23 - 188 N6_Mtase PF02384.11 311 0.00045 12.9 0.0 1 2 6.8e-05 0.0054 9.3 0.0 28 62 32 66 21 75 0.89 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_23 - 188 N6_Mtase PF02384.11 311 0.00045 12.9 0.0 2 2 0.035 2.8 0.4 0.0 128 137 115 124 106 133 0.84 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 2_6 - 232 DUF258 PF03193.11 161 2.2e-06 20.5 0.0 1 1 4.1e-08 3.2e-06 19.9 0.0 19 61 19 62 4 91 0.83 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 DUF258 PF03193.11 161 1.3e-05 18.0 0.0 1 1 2.5e-07 2e-05 17.4 0.0 21 75 88 154 70 174 0.68 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_45 - 742 TraG-D_C PF12696.2 128 1.2e-20 67.2 0.0 1 1 1.4e-22 2.2e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 4_4 - 754 TruB_N PF01509.13 149 0.00049 13.8 0.0 1 1 6.4e-06 0.001 12.8 0.0 20 103 10 99 7 114 0.81 # 2192 # 4453 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_10 - 389 AAA_31 PF13614.1 157 1.6e-09 31.5 0.0 1 2 1.4e-08 2.2e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_10 - 389 AAA_31 PF13614.1 157 1.6e-09 31.5 0.0 2 2 0.00018 0.028 7.9 0.1 110 152 227 268 223 272 0.84 # 6524 # 7690 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_6 - 232 NTPase_1 PF03266.10 168 0.00015 15.0 0.1 1 2 6.9e-05 0.0054 10.0 0.0 2 44 39 83 38 91 0.80 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 NTPase_1 PF03266.10 168 0.00015 15.0 0.1 2 2 0.0085 0.67 3.2 0.0 87 151 153 219 115 230 0.73 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 NTPase_1 PF03266.10 168 0.00049 13.4 0.2 1 2 0.0022 0.18 5.1 0.1 2 30 105 133 104 142 0.80 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 NTPase_1 PF03266.10 168 0.00049 13.4 0.2 2 2 0.00091 0.072 6.3 0.0 88 107 157 176 143 182 0.81 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 AAA_33 PF13671.1 143 0.0006 13.3 1.4 1 1 3.1e-05 0.0048 10.3 1.4 2 19 39 56 38 214 0.73 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_23 - 188 Methyltransf_26 PF13659.1 117 7.9e-14 45.3 0.1 1 1 2.7e-15 1.4e-13 44.5 0.1 2 114 52 147 51 150 0.90 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 6_3 - 519 Methyltransf_26 PF13659.1 117 2e-12 40.8 0.0 1 1 1.6e-13 8.4e-12 38.8 0.0 3 114 220 354 218 358 0.73 # 341 # 1897 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_14 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 38.1 0.0 1 2 6.2e-07 3.2e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_14 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 38.1 0.0 2 2 2.9e-07 1.5e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_46 - 1757 AAA_30 PF13604.1 196 3.1e-44 144.4 13.9 1 2 2.4e-05 0.0012 11.9 2.7 7 147 420 552 416 562 0.84 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_46 - 1757 AAA_30 PF13604.1 196 3.1e-44 144.4 13.9 2 2 1.5e-43 7.8e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_6 - 232 AAA_30 PF13604.1 196 0.00017 14.8 0.4 1 1 5.6e-06 0.00029 14.0 0.4 18 58 36 76 29 202 0.87 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_45 - 742 AAA_30 PF13604.1 196 0.00098 12.3 0.0 1 1 3.9e-05 0.0021 11.2 0.0 21 57 188 224 180 230 0.85 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_6 - 232 FtsK_SpoIIIE PF01580.13 205 0.00021 14.4 0.0 1 1 3.8e-06 0.0006 12.9 0.0 37 60 35 58 14 77 0.81 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_23 - 188 MTS PF05175.9 170 3.6e-09 29.8 0.0 1 1 6.3e-11 5e-09 29.3 0.0 24 141 45 149 41 166 0.85 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 6_3 - 519 MTS PF05175.9 170 6.5e-06 19.1 0.8 1 1 2.5e-07 2e-05 17.6 0.0 31 140 217 355 199 374 0.82 # 341 # 1897 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_23 - 188 Methyltrans_SAM PF10672.4 286 0.0017 10.8 0.0 1 1 1.5e-05 0.0024 10.3 0.0 197 261 114 173 105 180 0.78 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_23 - 188 Met_10 PF02475.11 200 0.00029 14.0 0.0 1 1 2.5e-06 0.00039 13.6 0.0 94 189 43 132 29 145 0.81 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 2_6 - 232 ABC_tran PF00005.22 137 3.8e-36 118.0 0.0 1 1 6.9e-38 5.4e-36 117.5 0.0 1 136 26 171 26 172 0.92 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 ABC_tran PF00005.22 137 0.00011 16.0 0.3 1 2 1.5e-05 0.0012 12.8 0.0 8 30 99 121 93 137 0.86 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 ABC_tran PF00005.22 137 0.00011 16.0 0.3 2 2 0.069 5.4 0.9 0.0 107 134 143 172 127 173 0.74 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 ATP-synt_ab PF00006.20 215 0.00042 13.4 0.1 1 1 8.3e-06 0.0013 11.8 0.1 8 35 29 56 23 74 0.86 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_14 - 228 Cons_hypoth95 PF03602.10 183 2.1e-05 17.5 0.0 1 2 0.00041 0.065 6.1 0.0 112 146 18 54 8 81 0.66 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_14 - 228 Cons_hypoth95 PF03602.10 183 2.1e-05 17.5 0.0 2 2 4e-05 0.0063 9.4 0.0 41 62 162 183 145 218 0.78 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 6_3 - 519 Eco57I PF07669.6 106 7.3e-07 23.1 0.1 1 2 2.3e-07 3.6e-05 17.7 0.0 3 104 294 406 291 408 0.81 # 341 # 1897 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 6_3 - 519 Eco57I PF07669.6 106 7.3e-07 23.1 0.1 2 2 0.014 2.3 2.2 0.1 54 85 412 444 409 461 0.79 # 341 # 1897 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 8_8 - 187 RuvB_N PF05496.7 234 0.00084 11.9 0.0 1 1 9.6e-06 0.0015 11.1 0.0 50 84 102 139 91 179 0.69 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_46 - 1757 AAA_19 PF13245.1 76 2.8e-07 23.8 2.0 1 1 1.7e-08 8.9e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_6 - 232 AAA_19 PF13245.1 76 0.00029 14.1 0.1 1 1 5.4e-05 0.0028 11.0 0.0 10 54 36 75 29 87 0.75 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 AAA_19 PF13245.1 76 0.00047 13.5 0.0 1 1 1.8e-05 0.00095 12.5 0.0 10 37 103 129 96 158 0.81 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_45 - 742 AAA_10 PF12846.2 304 2.2e-10 33.9 0.0 1 1 7.5e-11 4e-09 29.8 0.0 3 296 187 494 186 500 0.69 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 8_8 - 187 AAA_10 PF12846.2 304 7.5e-06 19.1 0.2 1 2 0.044 2.3 1.0 0.0 127 169 38 82 7 96 0.68 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 AAA_10 PF12846.2 304 7.5e-06 19.1 0.2 2 2 1.4e-06 7.6e-05 15.8 0.0 1 33 102 134 102 175 0.85 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 AAA_10 PF12846.2 304 2.1e-05 17.6 0.0 1 1 1e-06 5.3e-05 16.3 0.0 4 29 39 65 37 85 0.76 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 SbcCD_C PF13558.1 90 1.3e-05 18.6 0.2 1 1 1.3e-06 0.00021 14.8 0.2 32 89 143 187 126 188 0.76 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 ResIII PF04851.10 184 0.00074 12.9 0.0 1 2 2.8e-05 0.0044 10.4 0.0 8 51 89 128 50 144 0.78 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 ResIII PF04851.10 184 0.00074 12.9 0.0 2 2 0.021 3.3 1.0 0.0 112 154 131 172 125 174 0.79 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_23 - 188 Methyltransf_31 PF13847.1 152 3.2e-07 23.6 0.0 1 1 4.9e-09 3.9e-07 23.3 0.0 5 119 52 162 48 183 0.84 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 6_3 - 519 Methyltransf_31 PF13847.1 152 0.00019 14.6 0.0 1 1 6.8e-06 0.00053 13.1 0.0 3 84 217 308 215 378 0.68 # 341 # 1897 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_46 - 1757 Viral_helicase1 PF01443.13 234 0.00048 13.2 0.1 1 2 0.00026 0.04 6.9 0.0 1 23 988 1012 988 1192 0.71 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_46 - 1757 Viral_helicase1 PF01443.13 234 0.00048 13.2 0.1 2 2 0.0033 0.53 3.3 0.0 170 234 1386 1447 1342 1447 0.61 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_45 - 742 TrwB_AAD_bind PF10412.4 386 3.6e-150 493.3 0.0 1 1 2.8e-152 4.5e-150 493.0 0.0 2 386 172 561 171 561 0.99 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_46 - 1757 AAA_11 PF13086.1 236 0.0003 14.0 3.4 1 1 2.1e-06 0.00033 13.8 0.0 2 75 969 1039 968 1059 0.81 # 37883 # 43153 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_45 - 742 T4SS-DNA_transf PF02534.9 469 1.2e-09 30.7 0.0 1 1 2e-11 3.2e-09 29.3 0.0 264 361 382 476 198 500 0.83 # 35658 # 37883 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_23 - 188 TIGR00755 TIGR00755 256 2.7e-08 26.6 0.0 1 1 2.3e-10 3.6e-08 26.2 0.0 8 105 29 123 25 134 0.88 # 17220 # 17783 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_14 - 228 MethyltransfD12 PF02086.10 260 0.0006 12.8 0.0 1 2 0.014 2.1 1.2 0.0 173 188 16 31 10 92 0.81 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_14 - 228 MethyltransfD12 PF02086.10 260 0.0006 12.8 0.0 2 2 4e-05 0.0063 9.5 0.0 20 46 163 189 148 197 0.78 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_8 - 657 Plug PF07715.10 108 6e-24 78.1 1.9 1 1 2.3e-25 1.8e-23 76.5 1.9 3 108 46 149 44 149 0.94 # 8528 # 10498 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 4_4 - 754 Plug PF07715.10 108 2.3e-10 34.4 4.8 1 1 2.9e-12 2.3e-10 34.4 4.8 13 107 61 166 43 167 0.89 # 2192 # 4453 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 8_8 - 187 AAA_24 PF13479.1 213 0.001 12.2 0.0 1 2 2.3e-05 0.0036 10.4 0.0 3 21 102 120 100 127 0.84 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 AAA_24 PF13479.1 213 0.001 12.2 0.0 2 2 0.081 13 -1.2 0.0 12 30 151 171 131 172 0.83 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 2_6 - 232 NACHT PF05729.7 166 0.0003 14.0 0.1 1 2 8.6e-06 0.0014 11.9 0.0 3 20 39 56 37 76 0.86 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 NACHT PF05729.7 166 0.0003 14.0 0.1 2 2 0.057 9 -0.5 0.0 91 115 168 192 154 215 0.75 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_25 PF13481.1 194 9.6e-06 18.6 0.0 1 2 1e-06 8.1e-05 15.6 0.0 29 58 32 62 14 131 0.78 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_25 PF13481.1 194 9.6e-06 18.6 0.0 2 2 0.034 2.7 0.9 0.0 161 188 175 201 165 206 0.69 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 AAA_25 PF13481.1 194 2.4e-05 17.3 0.0 1 1 5.5e-07 4.4e-05 16.5 0.0 22 58 90 127 71 160 0.78 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_14 - 228 Methyltransf_15 PF09445.5 164 0.0013 11.9 0.0 1 2 0.045 7.1 -0.3 0.0 53 79 4 29 2 32 0.90 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_14 - 228 Methyltransf_15 PF09445.5 164 0.0013 11.9 0.0 2 2 4.2e-05 0.0067 9.5 0.0 3 31 166 194 164 209 0.86 # 10815 # 11498 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 8_5 - 86 ABC_tran_2 PF12848.2 85 0.0071 9.8 6.4 1 1 5.8e-05 0.0092 9.4 6.4 20 76 17 76 13 84 0.75 # 2621 # 2878 # 1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.543 2_6 - 232 AAA_28 PF13521.1 163 1.2e-06 22.1 0.1 1 2 1.2e-06 9.2e-05 16.0 0.0 2 21 39 58 38 94 0.79 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_6 - 232 AAA_28 PF13521.1 163 1.2e-06 22.1 0.1 2 2 0.0057 0.45 4.0 0.0 19 79 111 168 104 174 0.63 # 2189 # 2884 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_8 - 187 AAA_28 PF13521.1 163 0.00049 13.6 0.5 1 2 0.061 4.8 0.6 0.1 84 111 35 64 3 84 0.65 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 8_8 - 187 AAA_28 PF13521.1 163 0.00049 13.6 0.5 2 2 3.2e-05 0.0025 11.3 0.0 1 43 104 151 104 169 0.70 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 6_13 - 78 TOBE_2 PF08402.5 75 1.3e-15 50.8 0.1 1 1 9e-18 1.4e-15 50.6 0.1 1 75 2 73 2 73 0.87 # 7739 # 7972 # -1 # ID=6_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 8_8 - 187 AAA_5 PF07728.9 139 8.2e-05 15.9 0.4 1 1 2.2e-06 0.00035 13.9 0.2 1 74 104 173 104 177 0.72 # 4674 # 5234 # 1 # ID=8_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/51ee2bec-7735-4f6c-bdef-7e79b579cb05 # Target file: checkm_output/bins/pm494/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm494/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/51ee2bec-7735-4f6c-bdef-7e79b579cb05 checkm_output/bins/pm494/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:37 2020 # [ok]