# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 400 MipZ PF09140.6 261 7.8e-07 20.3 0.3 1 2 0.00056 0.029 5.3 0.0 3 52 112 166 110 195 0.74 # 31255 # 32454 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_31 - 400 MipZ PF09140.6 261 7.8e-07 20.3 0.3 2 2 2.6e-06 0.00014 13.0 0.1 89 135 236 282 221 288 0.88 # 31255 # 32454 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_16 - 609 AAA_15 PF13175.1 415 4.1e-37 120.1 0.0 1 2 1.8e-15 9.5e-14 43.1 0.1 1 143 3 162 3 181 0.62 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 609 AAA_15 PF13175.1 415 4.1e-37 120.1 0.0 2 2 3.9e-25 2e-23 75.0 0.0 242 415 219 376 185 376 0.87 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 609 AAA_21 PF13304.1 303 1.5e-18 59.7 0.0 1 2 9.6e-08 5e-06 18.6 0.0 1 30 26 59 26 93 0.76 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 609 AAA_21 PF13304.1 303 1.5e-18 59.7 0.0 2 2 6.2e-14 3.2e-12 38.9 0.0 219 300 281 374 203 376 0.78 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_52 - 80 Cytidylate_kin2 PF13189.1 179 0.00014 13.8 0.1 1 1 3e-06 0.00015 13.6 0.1 111 146 33 70 22 76 0.80 # 45444 # 45683 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_16 - 609 SMC_N PF02463.14 220 8.3e-10 30.2 0.1 1 1 3.9e-11 2.1e-09 28.9 0.0 2 47 3 47 2 62 0.90 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 609 AAA_23 PF13476.1 202 3.1e-12 39.2 0.4 1 1 1.6e-13 8.4e-12 37.8 0.4 1 171 5 251 5 277 0.53 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_34 - 124 AAA_13 PF13166.1 712 0.00034 11.1 3.1 1 1 7.3e-06 0.00038 10.9 3.1 345 446 7 104 2 116 0.74 # 35335 # 35706 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_31 - 400 CbiA PF01656.18 195 2.4e-20 64.7 0.0 1 1 9.5e-22 5e-20 63.7 0.0 2 144 113 295 112 302 0.72 # 31255 # 32454 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_16 - 609 AAA_29 PF13555.1 62 1.1e-07 23.3 0.0 1 1 4.4e-09 2.3e-07 22.3 0.0 1 45 3 46 3 58 0.88 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_19 - 102 Ribosomal_L20 PF00453.13 108 2.7e-05 16.1 0.0 1 1 8e-07 4.1e-05 15.5 0.0 46 98 7 60 4 68 0.92 # 18276 # 18581 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.464 1_31 - 400 AAA_31 PF13614.1 157 1.4e-05 17.1 0.0 1 2 0.0022 0.11 4.3 0.0 9 91 118 205 112 218 0.73 # 31255 # 32454 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_31 - 400 AAA_31 PF13614.1 157 1.4e-05 17.1 0.0 2 2 3.6e-05 0.0019 10.1 0.0 109 148 237 275 236 280 0.85 # 31255 # 32454 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_16 - 609 DUF2813 PF11398.3 373 9.9e-12 36.5 0.0 1 2 2e-08 1e-06 19.9 0.0 1 49 1 51 1 74 0.87 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 609 DUF2813 PF11398.3 373 9.9e-12 36.5 0.0 2 2 1e-06 5.4e-05 14.3 0.0 267 342 312 392 296 409 0.81 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 609 ABC_tran PF00005.22 137 7.4e-05 15.1 0.0 1 1 4.7e-06 0.00024 13.4 0.0 12 49 25 60 20 139 0.82 # 12944 # 14770 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_12 - 335 TrwB_AAD_bind PF10412.4 386 0.00066 10.3 0.0 1 1 2.2e-05 0.0012 9.5 0.0 258 292 68 102 62 105 0.87 # 9282 # 10286 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_52 - 80 Guanylate_kin PF00625.16 183 3.5e-05 15.3 0.1 1 1 7.1e-07 3.7e-05 15.2 0.1 106 147 28 71 10 77 0.81 # 45444 # 45683 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6557c37c-0623-4e34-8e7a-26bb38d5d091 # Target file: checkm_output/bins/pm49/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm49/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6557c37c-0623-4e34-8e7a-26bb38d5d091 checkm_output/bins/pm49/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:35 2020 # [ok]