# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 262 Mg_chelatase PF01078.16 207 0.00039 12.1 0.0 1 1 2.1e-05 0.00083 11.1 0.0 23 43 100 120 96 153 0.86 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 Mg_chelatase PF01078.16 207 0.00041 12.1 0.0 1 1 1.7e-05 0.00067 11.4 0.0 13 57 150 194 139 214 0.73 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_9 - 519 UPF0020 PF01170.13 180 8.4e-09 27.8 0.0 1 1 2.8e-10 2.2e-08 26.4 0.0 11 117 202 304 195 310 0.75 # 13259 # 14815 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_53 - 334 cobW PF02492.14 178 7.4e-05 14.8 0.0 1 1 1.5e-06 0.00012 14.1 0.0 3 44 162 200 160 225 0.80 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 IstB_IS21 PF01695.12 178 2.4e-69 224.8 0.1 1 1 8.2e-71 3.1e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 IstB_IS21 PF01695.12 178 3.6e-05 15.8 0.0 1 1 1.9e-06 7.3e-05 14.8 0.0 43 79 155 190 128 206 0.82 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_46 - 238 3HCDH_N PF02737.13 180 4.5e-05 15.7 4.4 1 2 6.4e-06 0.00049 12.3 0.2 3 68 12 71 6 86 0.65 # 41357 # 42070 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_46 - 238 3HCDH_N PF02737.13 180 4.5e-05 15.7 4.4 2 2 0.0014 0.11 4.7 0.7 45 80 146 181 117 214 0.63 # 41357 # 42070 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_31 - 177 SSB PF00436.20 104 1.8e-39 126.4 0.0 1 1 3.4e-41 2.6e-39 125.9 0.0 1 92 6 98 6 106 0.96 # 31420 # 31950 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_12 - 1073 UvrD_C_2 PF13538.1 104 1.2e-15 50.1 0.6 1 1 6.3e-17 4.9e-15 48.2 0.2 3 102 801 900 799 902 0.78 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 334 AAA_2 PF07724.9 171 7.2e-05 15.3 0.1 1 1 1.7e-06 0.00013 14.4 0.1 2 49 158 203 157 216 0.84 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_13 - 511 DUF87 PF01935.12 229 1.1e-09 31.0 0.0 1 1 4.4e-11 1.7e-09 30.3 0.0 12 78 118 178 109 260 0.78 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 334 DUF87 PF01935.12 229 2.9e-05 16.5 0.0 1 1 1.5e-06 5.9e-05 15.5 0.0 26 61 162 196 156 208 0.84 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 NB-ARC PF00931.17 287 0.00055 11.3 0.0 1 1 1.6e-05 0.0013 10.1 0.0 12 42 152 182 144 214 0.80 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 AAA_22 PF13401.1 131 9.7e-07 21.5 0.0 1 1 6.8e-08 2.6e-06 20.1 0.0 3 68 158 217 155 246 0.78 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_22 PF13401.1 131 2.1e-06 20.5 0.1 1 2 5.5e-06 0.00021 14.0 0.2 2 28 97 123 96 159 0.74 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_22 PF13401.1 131 2.1e-06 20.5 0.1 2 2 0.0041 0.16 4.7 0.0 87 117 151 196 132 204 0.62 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_3 PF07726.6 131 0.00039 12.6 0.0 1 1 1.2e-05 0.00093 11.4 0.0 2 72 102 171 101 201 0.70 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_17 PF13207.1 121 8.6e-05 15.9 0.0 1 1 3.1e-06 0.00012 15.4 0.0 2 38 102 133 101 232 0.74 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_45 - 858 AAA_17 PF13207.1 121 0.00073 12.9 0.8 1 2 0.0013 0.049 7.0 0.0 3 19 490 506 489 559 0.82 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_45 - 858 AAA_17 PF13207.1 121 0.00073 12.9 0.8 2 2 0.065 2.5 1.5 0.1 50 86 617 649 587 730 0.65 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_13 - 511 Miro PF08477.8 119 0.00046 13.2 0.0 1 1 1.8e-05 0.0014 11.7 0.0 2 31 129 161 128 180 0.77 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 334 MobB PF03205.9 140 4.4e-06 19.0 0.2 1 1 1.7e-07 1.3e-05 17.5 0.0 2 38 161 196 160 208 0.81 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 1073 PhoH PF02562.11 205 8.2e-10 30.7 2.2 1 2 8.6e-07 2.2e-05 16.3 0.3 5 40 482 518 479 531 0.82 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 1073 PhoH PF02562.11 205 8.2e-10 30.7 2.2 2 2 5.6e-06 0.00014 13.6 0.1 120 162 565 608 561 642 0.80 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 2_2 - 262 PhoH PF02562.11 205 9.6e-09 27.2 0.1 1 1 8.8e-10 2.3e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 PhoH PF02562.11 205 1.8e-05 16.5 0.0 1 1 1.4e-06 3.5e-05 15.6 0.0 9 39 149 179 142 210 0.77 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 MCM PF00493.18 331 0.00016 13.1 0.0 1 2 7.5e-06 0.00058 11.2 0.0 56 120 98 162 82 172 0.81 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 MCM PF00493.18 331 0.00016 13.1 0.0 2 2 0.034 2.6 -0.8 0.0 161 211 190 237 186 259 0.71 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 T2SE PF00437.15 272 3e-53 172.9 0.1 1 1 4.6e-55 3.5e-53 172.7 0.1 3 270 11 311 9 313 0.92 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 Zeta_toxin PF06414.7 201 2.2e-06 19.4 0.0 1 1 4.7e-08 3.7e-06 18.7 0.0 11 51 154 194 144 206 0.82 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 Arch_ATPase PF01637.13 234 2.6e-05 16.5 0.0 1 1 6.1e-07 4.7e-05 15.7 0.0 16 69 157 207 144 248 0.86 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 AAA_16 PF13191.1 185 3.5e-07 22.9 0.0 1 1 2.9e-08 7.4e-07 21.8 0.0 24 51 159 186 138 211 0.81 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_45 - 858 AAA_16 PF13191.1 185 0.0001 14.9 0.1 1 2 0.00021 0.0055 9.2 0.0 25 47 487 506 474 558 0.76 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_45 - 858 AAA_16 PF13191.1 185 0.0001 14.9 0.1 2 2 0.03 0.78 2.2 0.0 118 170 658 712 621 719 0.77 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 2_2 - 262 AAA_16 PF13191.1 185 0.00011 14.7 0.1 1 1 1e-05 0.00026 13.5 0.1 23 51 98 126 84 166 0.79 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_13 - 511 AAA_23 PF13476.1 202 0.0016 11.3 1.9 1 1 3.4e-05 0.0026 10.6 1.9 23 42 130 150 126 330 0.91 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 334 AAA_18 PF13238.1 129 7.8e-05 15.5 0.0 1 1 2.4e-06 0.00018 14.4 0.0 1 28 162 194 162 216 0.76 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_46 - 238 AAA_13 PF13166.1 712 4.6e-05 14.5 6.3 1 1 7.6e-07 5.9e-05 14.2 6.3 326 465 37 195 31 223 0.57 # 41357 # 42070 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_16 - 239 CbiA PF01656.18 195 1.3e-07 23.7 0.9 1 1 3.9e-07 3e-05 16.0 0.9 3 167 5 144 3 170 0.69 # 22373 # 23089 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_14 - 141 Rossmann-like PF10727.4 127 0.00011 14.5 0.0 1 1 2e-06 0.00015 14.0 0.0 78 111 73 106 45 115 0.85 # 21041 # 21463 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 2_2 - 262 AAA_29 PF13555.1 62 1.1e-05 17.5 0.0 1 1 8.4e-07 2.2e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_45 - 858 AAA_29 PF13555.1 62 2.5e-05 16.3 0.0 1 1 2.3e-06 5.8e-05 15.2 0.0 23 41 487 504 475 508 0.86 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_53 - 334 AAA_29 PF13555.1 62 7e-05 14.9 0.0 1 1 7.2e-06 0.00019 13.6 0.0 22 53 158 189 149 197 0.83 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA PF00004.24 132 8e-08 25.1 0.0 1 1 1.8e-09 1.4e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 Bac_DnaA PF00308.13 219 9.9e-11 34.2 0.0 1 1 2.1e-12 1.6e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 Sigma54_activat PF00158.21 168 7.6e-06 18.0 0.0 1 1 1.8e-07 1.4e-05 17.2 0.0 16 67 153 204 140 213 0.80 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 MMR_HSR1 PF01926.18 116 0.00063 12.3 0.0 1 1 1.8e-05 0.0014 11.2 0.0 2 24 162 189 161 244 0.73 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_9 - 519 N6_Mtase PF02384.11 311 1.3e-116 381.5 0.6 1 1 2.3e-118 1.7e-116 381.1 0.6 2 310 171 479 170 480 0.97 # 13259 # 14815 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_53 - 334 DUF258 PF03193.11 161 8.7e-05 14.3 0.0 1 1 2.2e-06 0.00017 13.4 0.0 30 97 154 219 135 229 0.74 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_13 - 511 TraG-D_C PF12696.2 128 5.9e-21 67.2 0.0 1 1 1.5e-22 1.1e-20 66.3 0.0 1 127 352 474 352 475 0.83 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 334 AAA_33 PF13671.1 143 0.00017 14.0 0.0 1 1 8.2e-06 0.00032 13.2 0.0 2 62 162 236 161 249 0.81 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_33 PF13671.1 143 0.00028 13.3 0.2 1 1 1.8e-05 0.00069 12.1 0.2 2 36 102 142 102 255 0.67 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_7 - 1041 KTI12 PF08433.5 270 8.4e-05 14.4 0.0 1 1 7e-06 0.00027 12.7 0.0 141 186 870 916 868 921 0.91 # 8792 # 11914 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.472 2_2 - 262 KTI12 PF08433.5 270 0.00013 13.7 0.4 1 2 0.00013 0.0049 8.6 0.0 4 81 102 172 101 174 0.68 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 KTI12 PF08433.5 270 0.00013 13.7 0.4 2 2 0.0073 0.28 2.8 0.1 34 59 232 257 212 261 0.77 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 DnaB_C PF03796.10 259 0.00012 13.6 0.0 1 1 2.4e-06 0.00019 12.9 0.0 16 55 96 135 85 158 0.90 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_9 - 519 Methyltransf_26 PF13659.1 117 3.1e-14 45.6 0.0 1 1 1.3e-15 1e-13 43.9 0.0 3 114 220 354 218 357 0.76 # 13259 # 14815 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_12 - 1073 AAA_30 PF13604.1 196 4.8e-50 162.4 4.5 1 1 1.9e-51 4.8e-50 162.4 4.5 1 186 480 657 480 665 0.97 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 334 AAA_30 PF13604.1 196 4.8e-05 15.5 0.1 1 1 3.1e-06 7.9e-05 14.8 0.1 13 65 155 206 143 228 0.77 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_30 PF13604.1 196 0.00036 12.7 0.2 1 1 4.2e-05 0.0011 11.1 0.1 16 49 97 131 87 162 0.73 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 FtsK_SpoIIIE PF01580.13 205 6.1e-07 21.6 0.0 1 1 2.5e-08 9.6e-07 21.0 0.0 27 65 148 186 120 207 0.71 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_45 - 858 FtsK_SpoIIIE PF01580.13 205 6.4e-06 18.3 0.0 1 1 4.5e-07 1.7e-05 16.9 0.0 21 64 457 512 441 522 0.80 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_9 - 519 MTS PF05175.9 170 8.7e-07 21.0 0.2 1 1 3.2e-08 2.5e-06 19.5 0.0 31 140 217 355 199 374 0.81 # 13259 # 14815 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_53 - 334 ABC_tran PF00005.22 137 2e-07 23.9 0.0 1 1 4.3e-09 3.3e-07 23.2 0.0 8 51 156 200 152 260 0.86 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_9 - 519 Eco57I PF07669.6 106 6.8e-07 22.2 0.1 1 2 2.1e-07 1.6e-05 17.8 0.0 3 104 294 406 290 408 0.82 # 13259 # 14815 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_9 - 519 Eco57I PF07669.6 106 6.8e-07 22.2 0.1 2 2 0.031 2.4 1.2 0.0 55 85 413 444 409 451 0.80 # 13259 # 14815 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 2_2 - 262 RuvB_N PF05496.7 234 0.0004 12.0 0.0 1 1 7.1e-06 0.00055 11.5 0.0 48 75 97 124 45 170 0.84 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_19 PF13245.1 76 2.9e-07 22.8 0.0 1 1 1.9e-08 7.5e-07 21.4 0.0 11 37 101 126 95 147 0.81 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 AAA_19 PF13245.1 76 6e-05 15.4 0.1 1 1 3.6e-06 0.00014 14.2 0.1 6 47 155 191 151 221 0.80 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 1073 Helicase_RecD PF05127.9 177 0.0018 10.4 5.9 1 1 8.8e-06 0.00068 11.8 1.3 5 115 457 589 455 603 0.58 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_45 - 858 AAA_10 PF12846.2 304 1.5e-31 102.4 0.0 1 1 2e-32 5.1e-31 100.7 0.0 2 293 487 763 486 770 0.88 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_13 - 511 AAA_10 PF12846.2 304 2.1e-11 36.2 0.0 1 2 5.3e-08 1.4e-06 20.5 0.0 3 47 128 173 126 216 0.86 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_13 - 511 AAA_10 PF12846.2 304 2.1e-11 36.2 0.0 2 2 6.2e-06 0.00016 13.7 0.0 214 286 329 416 308 433 0.67 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 334 AAA_10 PF12846.2 304 0.00015 13.8 0.0 1 1 1.2e-05 0.00031 12.8 0.0 3 28 161 186 159 218 0.74 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_7 - 1041 ResIII PF04851.10 184 4.5e-35 113.6 0.2 1 1 3.7e-36 1.4e-34 112.0 0.2 4 183 273 440 270 441 0.91 # 8792 # 11914 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.472 1_53 - 334 ResIII PF04851.10 184 8.5e-05 15.0 0.0 1 1 4.2e-06 0.00016 14.1 0.0 22 58 141 194 100 214 0.73 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_9 - 519 Methyltransf_31 PF13847.1 152 7.1e-05 15.0 0.0 1 1 2.4e-06 0.00018 13.6 0.0 3 108 217 353 215 387 0.63 # 13259 # 14815 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_12 - 1073 Viral_helicase1 PF01443.13 234 2.9e-15 48.9 1.8 1 2 1e-07 8e-06 18.0 0.0 3 117 502 619 500 667 0.67 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 1073 Viral_helicase1 PF01443.13 234 2.9e-15 48.9 1.8 2 2 3.4e-11 2.6e-09 29.4 0.7 165 234 833 903 780 903 0.68 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 334 DUF2075 PF09848.4 352 2.1e-05 16.1 0.0 1 1 3.7e-07 2.8e-05 15.7 0.0 1 58 159 213 159 240 0.70 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_7 - 1041 DEAD PF00270.24 169 5.3e-09 28.3 0.0 1 1 3.5e-10 1.4e-08 27.0 0.0 21 142 308 425 289 442 0.73 # 8792 # 11914 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.472 1_53 - 334 DEAD PF00270.24 169 1.3e-05 17.2 0.1 1 1 6e-07 2.3e-05 16.5 0.1 11 70 156 212 147 232 0.79 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 DUF815 PF05673.8 250 0.00017 13.1 0.0 1 1 3.6e-06 0.00028 12.4 0.0 23 76 65 122 46 139 0.79 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_13 - 511 TrwB_AAD_bind PF10412.4 386 3.8e-110 360.6 0.0 1 1 1.8e-111 4.5e-110 360.3 0.0 1 385 112 493 112 494 0.95 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_45 - 858 TrwB_AAD_bind PF10412.4 386 6.4e-06 17.5 0.1 1 1 1e-06 2.6e-05 15.5 0.0 16 51 487 522 480 531 0.92 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_53 - 334 TrwB_AAD_bind PF10412.4 386 1.6e-05 16.1 0.0 1 1 1e-06 2.6e-05 15.4 0.0 13 49 157 192 149 201 0.82 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_11 PF13086.1 236 0.00035 12.7 0.3 1 1 8.7e-06 0.00067 11.8 0.3 6 44 89 142 82 260 0.72 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 Sigma54_activ_2 PF14532.1 138 2.9e-07 23.2 0.0 1 1 1.4e-08 5.3e-07 22.3 0.0 14 68 152 206 145 213 0.91 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 Sigma54_activ_2 PF14532.1 138 0.00023 13.8 0.1 1 1 1.5e-05 0.00059 12.4 0.0 3 44 79 122 77 151 0.81 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_13 - 511 T4SS-DNA_transf PF02534.9 469 4.3e-16 51.0 0.0 1 2 0.062 4.8 -1.9 0.0 46 85 128 170 104 173 0.70 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_13 - 511 T4SS-DNA_transf PF02534.9 469 4.3e-16 51.0 0.0 2 2 1.6e-17 1.3e-15 49.4 0.0 250 440 300 489 297 503 0.88 # 19509 # 21041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 334 Pox_A32 PF04665.7 241 0.00024 13.0 0.0 1 1 5.5e-06 0.00042 12.2 0.0 14 44 160 190 149 211 0.82 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 1073 PIF1 PF05970.9 364 2e-05 16.1 0.2 1 2 6.8e-06 0.00026 12.5 0.1 5 66 484 541 480 604 0.80 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 1073 PIF1 PF05970.9 364 2e-05 16.1 0.2 2 2 0.019 0.74 1.1 0.0 334 362 798 825 785 827 0.87 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 334 PIF1 PF05970.9 364 0.0006 11.3 0.0 1 1 2.6e-05 0.001 10.6 0.0 21 57 158 194 150 208 0.80 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 RNA_helicase PF00910.17 107 0.00036 13.3 0.0 1 1 1.4e-05 0.0011 11.7 0.0 1 24 162 185 162 215 0.79 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_46 - 238 Ribosomal_L29 PF00831.18 58 0.0065 8.8 5.4 1 2 3.2e-05 0.0025 10.1 0.4 13 35 39 61 34 75 0.54 # 41357 # 42070 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_46 - 238 Ribosomal_L29 PF00831.18 58 0.0065 8.8 5.4 2 2 0.055 4.3 -0.3 0.1 28 53 161 186 154 190 0.64 # 41357 # 42070 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_53 - 334 UPF0079 PF02367.12 123 9.2e-06 17.9 0.0 1 1 2.3e-07 1.8e-05 17.0 0.0 11 45 155 189 145 193 0.85 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 NACHT PF05729.7 166 2.2e-05 16.7 0.0 1 1 1.9e-06 4.8e-05 15.6 0.0 1 24 160 183 160 188 0.90 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_45 - 858 NACHT PF05729.7 166 0.0007 11.8 0.1 1 2 0.00074 0.019 7.2 0.1 3 19 489 505 488 514 0.86 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_45 - 858 NACHT PF05729.7 166 0.0007 11.8 0.1 2 2 0.033 0.85 1.8 0.0 100 161 728 789 692 794 0.78 # 38768 # 41341 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 2_2 - 262 NACHT PF05729.7 166 0.00094 11.4 2.1 1 2 0.00018 0.0045 9.2 0.3 3 23 102 122 100 148 0.84 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 NACHT PF05729.7 166 0.00094 11.4 2.1 2 2 0.035 0.89 1.7 0.1 80 127 156 200 139 221 0.76 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_25 PF13481.1 194 8.4e-05 14.6 0.0 1 1 3.6e-06 0.00014 13.8 0.0 29 57 95 123 76 170 0.86 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 334 AAA_25 PF13481.1 194 0.00015 13.8 0.0 1 1 1.4e-05 0.00054 11.9 0.0 20 58 147 184 129 210 0.78 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_28 PF13521.1 163 6.9e-06 18.6 1.1 1 1 4.6e-07 3.5e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 1073 Herpes_Helicase PF02689.9 819 1.7e-05 15.2 0.4 1 3 0.0011 0.086 3.0 0.0 169 209 538 578 490 585 0.85 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 1073 Herpes_Helicase PF02689.9 819 1.7e-05 15.2 0.4 2 3 0.041 3.1 -2.2 0.0 397 454 639 704 625 709 0.67 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 1073 Herpes_Helicase PF02689.9 819 1.7e-05 15.2 0.4 3 3 1.5e-05 0.0011 9.2 0.0 736 782 851 898 829 917 0.77 # 16286 # 19504 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 334 AAA_5 PF07728.9 139 2.2e-05 16.8 0.0 1 1 1.3e-06 5.1e-05 15.6 0.0 2 31 162 192 161 221 0.77 # 46372 # 47373 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_2 - 262 AAA_5 PF07728.9 139 0.00015 14.1 0.2 1 1 8.6e-06 0.00033 12.9 0.2 1 19 101 119 101 243 0.78 # 907 # 1692 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f70fc812-1cb2-4969-8206-f866f5342dbf # Target file: checkm_output/bins/pm489/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm489/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f70fc812-1cb2-4969-8206-f866f5342dbf checkm_output/bins/pm489/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:35 2020 # [ok]