# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_88 - 188 Methyltransf_12 PF08242.7 99 2.6e-05 17.9 0.0 1 1 3.7e-07 4.6e-05 17.1 0.0 1 99 55 144 55 144 0.84 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_3 - 519 UPF0020 PF01170.13 180 2e-09 30.5 0.1 1 1 2.5e-10 1.5e-08 27.6 0.0 11 117 202 304 195 311 0.76 # 4516 # 6072 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_97 - 228 UPF0020 PF01170.13 180 1.6e-05 17.7 0.0 1 2 0.00058 0.036 6.8 0.0 103 119 17 33 4 88 0.73 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_97 - 228 UPF0020 PF01170.13 180 1.6e-05 17.7 0.0 2 2 0.00012 0.0077 9.0 0.0 28 54 163 189 158 221 0.67 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_88 - 188 RrnaAD PF00398.15 262 6e-08 25.2 0.0 1 1 6e-10 7.6e-08 24.9 0.0 9 113 29 128 24 148 0.87 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 260 IstB_IS21 PF01695.12 178 5.7e-73 237.3 0.1 1 2 0.049 6.1 -0.6 0.0 64 97 25 57 24 61 0.64 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 IstB_IS21 PF01695.12 178 5.7e-73 237.3 0.1 2 2 9.8e-75 1.2e-72 236.2 0.1 1 178 56 235 56 235 0.98 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_101 - 389 MipZ PF09140.6 261 5.4e-06 18.8 0.4 1 2 3.5e-06 0.00044 12.6 0.0 2 47 108 153 107 157 0.87 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 389 MipZ PF09140.6 261 5.4e-06 18.8 0.4 2 2 0.0011 0.14 4.4 0.0 88 134 224 270 197 292 0.84 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_85 - 151 SSB PF00436.20 104 1.3e-27 89.0 0.6 1 1 1.3e-29 1.6e-27 88.7 0.6 26 101 2 80 1 83 0.93 # 75686 # 76138 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.600 1_88 - 188 Methyltransf_18 PF12847.2 112 2e-10 34.5 0.0 1 1 3.4e-12 4.2e-10 33.5 0.0 4 109 53 146 50 148 0.88 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_40 - 1757 UvrD_C_2 PF13538.1 104 1.6e-07 24.7 0.7 1 2 0.013 1.6 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_40 - 1757 UvrD_C_2 PF13538.1 104 1.6e-07 24.7 0.7 2 2 4.2e-08 5.3e-06 19.8 0.2 3 102 1341 1444 1339 1446 0.77 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_62 - 876 DUF87 PF01935.12 229 2.8e-07 23.8 0.0 1 1 6.6e-09 8.2e-07 22.2 0.0 26 222 482 669 461 676 0.77 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_12 - 260 AAA_22 PF13401.1 131 1.8e-06 21.3 0.2 1 2 2.2e-05 0.0028 11.0 0.0 5 21 103 119 99 131 0.83 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AAA_22 PF13401.1 131 1.8e-06 21.3 0.2 2 2 0.00036 0.046 7.1 0.0 88 103 154 181 126 203 0.66 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_97 - 228 N6_N4_Mtase PF01555.13 231 7.9e-37 120.1 0.0 1 2 1.2e-15 1.5e-13 44.0 0.0 1 114 21 124 21 137 0.89 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_97 - 228 N6_N4_Mtase PF01555.13 231 7.9e-37 120.1 0.0 2 2 5.4e-25 6.7e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_41 - 739 AAA_17 PF13207.1 121 0.00041 14.4 0.0 1 1 8.7e-06 0.0011 13.0 0.0 3 28 189 218 187 303 0.70 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 876 MobB PF03205.9 140 0.00085 12.3 0.1 1 1 5.4e-05 0.0034 10.3 0.0 4 37 483 515 481 523 0.79 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_41 - 739 MobB PF03205.9 140 0.0014 11.6 0.0 1 1 5.3e-05 0.0033 10.4 0.0 7 34 192 219 188 225 0.89 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_71 - 121 CTP_transf_2 PF01467.21 157 0.0013 12.0 0.0 1 1 1.2e-05 0.0015 11.8 0.0 32 64 7 38 2 93 0.70 # 64993 # 65355 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.499 1_101 - 389 ArsA_ATPase PF02374.10 305 2.2e-06 20.1 0.4 1 2 1.7e-06 0.00021 13.6 0.1 9 36 115 142 109 151 0.89 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 389 ArsA_ATPase PF02374.10 305 2.2e-06 20.1 0.4 2 2 0.0011 0.14 4.3 0.0 123 136 231 244 221 251 0.84 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 260 PhoH PF02562.11 205 1.1e-07 24.5 0.2 1 2 0.064 8 -1.2 0.0 62 108 19 64 2 76 0.61 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 PhoH PF02562.11 205 1.1e-07 24.5 0.2 2 2 3.6e-09 4.4e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AFG1_ATPase PF03969.11 362 9e-05 14.6 0.2 1 1 2.8e-06 0.00035 12.6 0.2 63 216 103 254 43 259 0.72 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_65 - 120 Zeta_toxin PF06414.7 201 0.00089 11.6 0.0 1 1 1.2e-05 0.0015 10.9 0.0 14 37 84 107 74 115 0.80 # 61069 # 61428 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_101 - 389 VirC1 PF07015.6 231 8.3e-05 14.9 0.1 1 2 0.00028 0.035 6.3 0.0 4 42 109 147 107 154 0.91 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 389 VirC1 PF07015.6 231 8.3e-05 14.9 0.1 2 2 0.0003 0.038 6.2 0.1 84 139 235 290 222 312 0.77 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 260 Arch_ATPase PF01637.13 234 0.0012 11.8 0.1 1 2 3.4e-05 0.0043 9.9 0.0 8 37 90 119 87 140 0.79 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 Arch_ATPase PF01637.13 234 0.0012 11.8 0.1 2 2 0.071 8.8 -0.9 0.0 121 150 167 192 144 203 0.68 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_41 - 739 AAA_16 PF13191.1 185 4.8e-06 19.9 0.0 1 1 4.1e-07 2.5e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 260 AAA_16 PF13191.1 185 7.6e-05 16.0 1.0 1 1 6e-06 0.00038 13.7 0.1 16 41 97 119 84 146 0.78 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_101 - 389 CbiA PF01656.18 195 1.2e-36 119.1 0.0 1 1 1.3e-38 1.7e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 260 AAA_14 PF13173.1 128 1.5e-06 21.4 0.0 1 1 2.3e-08 2.8e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AAA_29 PF13555.1 62 0.00093 12.0 0.0 1 1 1.4e-05 0.0018 11.1 0.0 19 59 98 139 89 141 0.72 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AAA PF00004.24 132 2.3e-07 24.3 0.0 1 1 3.2e-09 4e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 Bac_DnaA PF00308.13 219 1.3e-09 31.2 0.0 1 1 1.6e-11 2e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 Sigma54_activat PF00158.21 168 0.00017 14.3 0.1 1 1 8.2e-06 0.001 11.8 0.1 18 53 98 133 82 198 0.72 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_3 - 519 N6_Mtase PF02384.11 311 3.7e-118 387.3 1.0 1 1 7.9e-120 5e-118 386.9 1.0 2 310 171 479 170 480 0.97 # 4516 # 6072 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_88 - 188 N6_Mtase PF02384.11 311 0.00035 12.9 0.0 1 2 6.8e-05 0.0042 9.3 0.0 28 62 32 66 21 75 0.89 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_88 - 188 N6_Mtase PF02384.11 311 0.00035 12.9 0.0 2 2 0.035 2.2 0.4 0.0 128 137 115 124 106 133 0.84 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 260 DUF258 PF03193.11 161 1.6e-05 17.4 0.0 1 1 2e-07 2.4e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_41 - 739 TraG-D_C PF12696.2 128 9.8e-21 67.2 0.0 1 1 1.4e-22 1.8e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_24 - 754 TruB_N PF01509.13 149 0.00039 13.8 0.0 1 1 6.4e-06 0.0008 12.8 0.0 20 103 10 99 7 114 0.81 # 21126 # 23387 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_101 - 389 AAA_31 PF13614.1 157 1.2e-09 31.5 0.0 1 2 1.4e-08 1.7e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 389 AAA_31 PF13614.1 157 1.2e-09 31.5 0.0 2 2 0.00018 0.022 7.9 0.1 110 152 227 268 223 272 0.84 # 89883 # 91049 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 260 NTPase_1 PF03266.10 168 0.00029 13.8 0.1 1 2 0.0016 0.2 4.5 0.1 2 30 105 133 104 153 0.83 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 NTPase_1 PF03266.10 168 0.00029 13.8 0.1 2 2 0.00025 0.031 7.2 0.0 88 112 157 181 144 204 0.72 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_65 - 120 KTI12 PF08433.5 270 0.00079 11.9 0.0 1 1 1e-05 0.0013 11.1 0.0 5 30 90 115 89 118 0.90 # 61069 # 61428 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_88 - 188 Methyltransf_26 PF13659.1 117 6.2e-14 45.3 0.1 1 1 2.7e-15 1.1e-13 44.5 0.1 2 114 52 147 51 150 0.90 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_3 - 519 Methyltransf_26 PF13659.1 117 1.6e-12 40.8 0.0 1 1 1.6e-13 6.6e-12 38.8 0.0 3 114 220 354 218 358 0.73 # 4516 # 6072 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_97 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 38.1 0.0 1 2 6.2e-07 2.6e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_97 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 38.1 0.0 2 2 2.9e-07 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_40 - 1757 AAA_30 PF13604.1 196 2.5e-44 144.4 13.9 1 3 0.083 5.2 -0.2 0.0 41 86 223 269 219 281 0.81 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_40 - 1757 AAA_30 PF13604.1 196 2.5e-44 144.4 13.9 2 3 1.6e-05 0.00098 11.9 2.7 7 147 420 552 416 562 0.84 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_40 - 1757 AAA_30 PF13604.1 196 2.5e-44 144.4 13.9 3 3 9.9e-44 6.2e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_41 - 739 AAA_30 PF13604.1 196 0.00077 12.3 0.0 1 1 2.6e-05 0.0016 11.2 0.0 21 57 188 224 180 230 0.85 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.7 0.0 1 2 1.7e-06 0.00022 14.0 0.0 38 63 475 504 455 507 0.83 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_62 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.7 0.0 2 2 0.015 1.9 1.1 0.0 75 166 530 625 529 668 0.82 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_88 - 188 MTS PF05175.9 170 2.8e-09 29.8 0.0 1 1 6.3e-11 3.9e-09 29.3 0.0 24 141 45 149 41 166 0.85 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_3 - 519 MTS PF05175.9 170 5.2e-06 19.1 0.8 1 1 2.5e-07 1.6e-05 17.6 0.0 31 140 217 355 199 374 0.82 # 4516 # 6072 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_88 - 188 Methyltrans_SAM PF10672.4 286 0.0013 10.8 0.0 1 1 1.5e-05 0.0019 10.3 0.0 197 261 114 173 105 180 0.78 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_88 - 188 Met_10 PF02475.11 200 0.00023 14.0 0.0 1 1 2.5e-06 0.00031 13.6 0.0 94 189 43 132 29 145 0.81 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 260 ABC_tran PF00005.22 137 0.00018 15.0 0.3 1 2 1.2e-05 0.0015 12.1 0.0 8 30 99 121 93 136 0.86 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 ABC_tran PF00005.22 137 0.00018 15.0 0.3 2 2 0.051 6.4 0.3 0.0 107 134 143 172 126 174 0.74 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_97 - 228 Cons_hypoth95 PF03602.10 183 1.7e-05 17.5 0.0 1 2 0.00041 0.051 6.1 0.0 112 146 18 54 8 81 0.66 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_97 - 228 Cons_hypoth95 PF03602.10 183 1.7e-05 17.5 0.0 2 2 4e-05 0.005 9.4 0.0 41 62 162 183 145 218 0.78 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 2_3 - 519 Eco57I PF07669.6 106 5.8e-07 23.1 0.1 1 2 2.3e-07 2.8e-05 17.7 0.0 3 104 294 406 291 408 0.81 # 4516 # 6072 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 2_3 - 519 Eco57I PF07669.6 106 5.8e-07 23.1 0.1 2 2 0.014 1.8 2.2 0.1 54 85 412 444 409 461 0.79 # 4516 # 6072 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_12 - 260 RuvB_N PF05496.7 234 0.00041 12.6 0.0 1 1 6.5e-06 0.00081 11.7 0.0 50 119 102 182 92 190 0.65 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 1757 AAA_19 PF13245.1 76 2.2e-07 23.8 2.0 1 1 1.7e-08 7e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_65 - 120 AAA_19 PF13245.1 76 0.0003 13.8 0.0 1 1 1.4e-05 0.00057 12.9 0.0 13 38 89 114 80 119 0.79 # 61069 # 61428 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_12 - 260 AAA_19 PF13245.1 76 0.00051 13.0 0.0 1 1 3.2e-05 0.0013 11.7 0.0 10 37 103 129 96 154 0.81 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_62 - 876 AAA_10 PF12846.2 304 5.6e-49 160.3 0.0 1 1 2.3e-50 9.7e-49 159.6 0.0 1 294 479 768 479 774 0.89 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_41 - 739 AAA_10 PF12846.2 304 1.7e-10 34.0 0.0 1 1 7.5e-11 3.1e-09 29.8 0.0 3 296 187 494 186 500 0.69 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 260 AAA_10 PF12846.2 304 9.4e-06 18.4 0.6 1 3 0.085 3.6 0.1 0.0 127 169 38 82 9 95 0.68 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AAA_10 PF12846.2 304 9.4e-06 18.4 0.6 2 3 2.9e-06 0.00012 14.8 0.1 1 33 102 134 102 171 0.89 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AAA_10 PF12846.2 304 9.4e-06 18.4 0.6 3 3 0.073 3 0.3 0.0 202 247 142 192 134 202 0.68 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_1 - 1038 ResIII PF04851.10 184 1.9e-36 118.8 0.7 1 1 1.8e-37 1.1e-35 116.3 0.1 3 183 271 439 269 440 0.90 # 1 # 3114 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.438 1_12 - 260 ResIII PF04851.10 184 0.00046 13.2 0.0 1 2 0.00014 0.0087 9.1 0.0 8 50 89 127 50 135 0.78 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 ResIII PF04851.10 184 0.00046 13.2 0.0 2 2 0.015 0.96 2.4 0.0 112 163 131 181 125 203 0.72 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 188 Methyltransf_31 PF13847.1 152 2.5e-07 23.6 0.0 1 1 4.9e-09 3.1e-07 23.3 0.0 5 119 52 162 48 183 0.84 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_3 - 519 Methyltransf_31 PF13847.1 152 0.00015 14.6 0.0 1 1 6.8e-06 0.00042 13.1 0.0 3 84 217 308 215 378 0.68 # 4516 # 6072 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_40 - 1757 Viral_helicase1 PF01443.13 234 0.00038 13.2 0.1 1 2 0.00026 0.032 6.9 0.0 1 23 988 1012 988 1192 0.71 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_40 - 1757 Viral_helicase1 PF01443.13 234 0.00038 13.2 0.1 2 2 0.0033 0.42 3.3 0.0 170 234 1386 1447 1342 1447 0.61 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_1 - 1038 DEAD PF00270.24 169 3.8e-09 29.5 0.0 1 1 1e-10 1.3e-08 27.8 0.0 22 142 308 424 293 441 0.75 # 1 # 3114 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.438 1_41 - 739 TrwB_AAD_bind PF10412.4 386 2.8e-150 493.4 0.0 1 1 5.6e-152 3.5e-150 493.1 0.0 2 386 172 561 171 561 0.99 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 876 TrwB_AAD_bind PF10412.4 386 6.1e-07 21.5 0.1 1 2 4.8e-08 3e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_62 - 876 TrwB_AAD_bind PF10412.4 386 6.1e-07 21.5 0.1 2 2 0.051 3.2 -0.6 0.0 261 317 713 769 699 772 0.92 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_40 - 1757 AAA_11 PF13086.1 236 0.00023 14.0 3.4 1 1 2.1e-06 0.00026 13.8 0.0 2 75 969 1039 968 1059 0.81 # 33718 # 38988 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_41 - 739 T4SS-DNA_transf PF02534.9 469 9.5e-10 30.7 0.0 1 1 4e-11 2.5e-09 29.3 0.0 264 361 382 476 198 500 0.83 # 38988 # 41204 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 876 T4SS-DNA_transf PF02534.9 469 0.00033 12.5 0.0 1 2 0.0046 0.29 2.8 0.0 105 182 533 604 470 627 0.83 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_62 - 876 T4SS-DNA_transf PF02534.9 469 0.00033 12.5 0.0 2 2 0.00018 0.011 7.4 0.0 319 378 711 769 653 771 0.86 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_88 - 188 TIGR00755 TIGR00755 256 2.1e-08 26.6 0.0 1 1 2.3e-10 2.8e-08 26.2 0.0 8 105 29 123 25 134 0.88 # 79791 # 80354 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_97 - 228 MethyltransfD12 PF02086.10 260 0.00048 12.8 0.0 1 2 0.014 1.7 1.2 0.0 173 188 16 31 10 92 0.81 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_97 - 228 MethyltransfD12 PF02086.10 260 0.00048 12.8 0.0 2 2 4e-05 0.005 9.5 0.0 20 46 163 189 148 197 0.78 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_62 - 876 Pox_A32 PF04665.7 241 0.0011 11.4 0.0 1 1 2.3e-05 0.0029 10.1 0.0 7 38 473 504 469 519 0.85 # 57411 # 60038 # -1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_9 - 657 Plug PF07715.10 108 4.8e-24 78.1 1.9 1 1 2.3e-25 1.4e-23 76.5 1.9 3 108 46 149 44 149 0.94 # 8470 # 10440 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_24 - 754 Plug PF07715.10 108 1.8e-10 34.4 4.8 1 1 2.9e-12 1.8e-10 34.4 4.8 13 107 61 166 43 167 0.89 # 21126 # 23387 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_12 - 260 AAA_25 PF13481.1 194 3.2e-05 16.6 0.0 1 1 4.1e-07 5.2e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_97 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 1 2 0.045 5.7 -0.3 0.0 53 79 4 29 2 32 0.90 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_97 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 2 2 4.2e-05 0.0053 9.5 0.0 3 31 166 194 164 209 0.86 # 86075 # 86758 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_15 - 86 ABC_tran_2 PF12848.2 85 0.0057 9.8 6.4 1 1 5.8e-05 0.0073 9.4 6.4 20 76 17 76 13 84 0.75 # 14552 # 14809 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 1_12 - 260 AAA_28 PF13521.1 163 0.0013 11.9 1.6 1 2 0.061 7.6 -0.3 0.1 84 110 35 63 4 82 0.66 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AAA_28 PF13521.1 163 0.0013 11.9 1.6 2 2 3e-05 0.0037 10.4 0.2 1 43 104 151 104 172 0.70 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_13 - 78 TOBE_2 PF08402.5 75 1e-15 50.8 0.1 1 1 9e-18 1.1e-15 50.6 0.1 1 75 2 73 2 73 0.87 # 11914 # 12147 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_12 - 260 AAA_5 PF07728.9 139 3.7e-05 16.7 0.3 1 2 3.6e-06 0.00045 13.2 0.2 1 74 104 173 104 180 0.72 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 260 AAA_5 PF07728.9 139 3.7e-05 16.7 0.3 2 2 0.053 6.6 -0.3 0.0 90 123 225 258 218 259 0.63 # 11977 # 12756 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/46d446b0-972c-402f-809f-63c140a1be04 # Target file: checkm_output/bins/pm488/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm488/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/46d446b0-972c-402f-809f-63c140a1be04 checkm_output/bins/pm488/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:34 2020 # [ok]