# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_9 - 188 Methyltransf_12 PF08242.7 99 1.3e-05 18.1 0.0 1 1 3.1e-07 2.3e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_1 - 226 UPF0020 PF01170.13 180 5.3e-06 18.6 0.0 1 2 0.00032 0.012 7.7 0.0 104 119 18 33 7 88 0.73 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_1 - 226 UPF0020 PF01170.13 180 5.3e-06 18.6 0.0 2 2 0.00012 0.0047 9.0 0.0 28 54 163 189 158 220 0.67 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 3_9 - 188 UPF0020 PF01170.13 180 0.00065 11.8 0.0 1 1 5.8e-05 0.0022 10.1 0.0 18 43 40 65 32 130 0.71 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_9 - 188 RrnaAD PF00398.15 262 8.3e-09 27.3 0.0 1 1 1.4e-10 1.1e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_7 - 147 SSB PF00436.20 104 6.2e-28 89.3 0.6 1 1 1.2e-29 9.2e-28 88.7 0.6 26 101 2 80 1 83 0.93 # 4414 # 4854 # -1 # ID=2_7;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.583 3_9 - 188 Methyltransf_18 PF12847.2 112 1.4e-10 34.3 0.0 1 1 3.9e-12 2.9e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_20 - 1632 UvrD_C_2 PF13538.1 104 7.8e-08 25.0 0.7 1 2 0.012 0.89 2.3 0.0 6 44 1102 1140 1098 1170 0.74 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_20 - 1632 UvrD_C_2 PF13538.1 104 7.8e-08 25.0 0.7 2 2 4.8e-08 3.6e-06 19.6 0.2 3 102 1216 1319 1214 1321 0.77 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_40 - 877 DUF87 PF01935.12 229 1.7e-07 23.7 0.0 1 1 6.9e-09 5.2e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_1 - 226 N6_N4_Mtase PF01555.13 231 4.7e-37 120.1 0.0 1 2 1.3e-15 9.5e-14 43.9 0.0 1 114 21 124 21 133 0.89 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_1 - 226 N6_N4_Mtase PF01555.13 231 4.7e-37 120.1 0.0 2 2 5.3e-25 4e-23 74.6 0.0 169 228 141 200 126 203 0.90 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_22 - 742 AAA_17 PF13207.1 121 0.00024 14.4 0.0 1 1 8.7e-06 0.00066 13.0 0.0 3 28 189 218 187 303 0.70 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 877 MobB PF03205.9 140 0.00055 12.2 0.1 1 1 5.4e-05 0.002 10.3 0.0 4 37 484 516 482 524 0.79 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_22 - 742 MobB PF03205.9 140 0.00078 11.7 0.0 1 1 5.3e-05 0.002 10.4 0.0 7 34 192 219 188 225 0.89 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_22 - 742 AAA_16 PF13191.1 185 3.2e-06 19.7 0.0 1 1 4.1e-07 1.5e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_45 - 123 AAA_16 PF13191.1 185 0.001 11.6 0.1 1 1 4.6e-05 0.0017 10.8 0.1 22 48 86 112 80 119 0.88 # 41582 # 41950 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 3_9 - 188 Methyltransf_25 PF13649.1 101 9.1e-05 15.3 0.0 1 1 1.8e-06 0.00013 14.8 0.0 1 101 54 142 54 142 0.81 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_22 - 742 TraG-D_C PF12696.2 128 5.8e-21 67.2 0.0 1 1 1.4e-22 1.1e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_45 - 123 KTI12 PF08433.5 270 0.00063 11.4 0.1 1 1 1.4e-05 0.0011 10.7 0.1 5 30 92 117 91 120 0.87 # 41582 # 41950 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 3_9 - 188 Methyltransf_26 PF13659.1 117 3.5e-14 45.4 0.0 1 1 1.6e-15 5.9e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_1 - 226 Methyltransf_26 PF13659.1 117 1.1e-12 40.6 0.1 1 2 6.9e-08 2.6e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_1 - 226 Methyltransf_26 PF13659.1 117 1.1e-12 40.6 0.1 2 2 2e-07 7.5e-06 18.5 0.0 4 45 167 207 164 221 0.82 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_20 - 1632 AAA_30 PF13604.1 196 1e-44 144.9 15.6 1 3 0.037 1.4 0.9 0.0 41 86 98 144 93 157 0.84 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_20 - 1632 AAA_30 PF13604.1 196 1e-44 144.9 15.6 2 3 1.7e-05 0.00065 11.8 3.9 7 146 295 426 291 436 0.81 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_20 - 1632 AAA_30 PF13604.1 196 1e-44 144.9 15.6 3 3 8.9e-44 3.3e-42 136.7 1.9 1 186 843 1031 843 1037 0.94 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_22 - 742 AAA_30 PF13604.1 196 0.00047 12.3 0.0 1 1 2.6e-05 0.00098 11.2 0.0 21 57 188 224 180 230 0.85 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 877 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.5 0.1 1 2 2e-06 0.00015 13.7 0.0 39 63 477 505 464 508 0.84 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_40 - 877 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.5 0.1 2 2 0.015 1.1 1.1 0.0 75 166 531 626 530 669 0.82 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_9 - 188 MTS PF05175.9 170 6.5e-10 31.1 0.0 1 1 1.2e-11 8.8e-10 30.7 0.0 31 141 50 149 41 166 0.84 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_9 - 188 Methyltrans_SAM PF10672.4 286 0.00054 11.3 0.0 1 1 9.9e-06 0.00074 10.9 0.0 196 261 113 173 93 180 0.78 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_9 - 188 Met_10 PF02475.11 200 0.00065 11.8 0.0 1 1 1.1e-05 0.00084 11.4 0.0 98 189 47 132 29 145 0.78 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_1 - 226 Cons_hypoth95 PF03602.10 183 7.6e-06 17.9 0.0 1 2 0.0003 0.023 6.6 0.0 113 146 19 54 5 82 0.66 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_1 - 226 Cons_hypoth95 PF03602.10 183 7.6e-06 17.9 0.0 2 2 4e-05 0.003 9.5 0.0 41 62 162 183 145 218 0.78 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_20 - 1632 AAA_19 PF13245.1 76 1.2e-07 24.0 2.0 1 1 1e-08 3.9e-07 22.3 0.5 7 76 856 922 849 922 0.74 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_45 - 123 AAA_19 PF13245.1 76 0.0005 12.3 0.0 1 1 2.2e-05 0.00081 11.7 0.0 13 37 91 115 82 122 0.78 # 41582 # 41950 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_40 - 877 AAA_10 PF12846.2 304 3.1e-49 160.5 0.0 1 1 1.5e-50 5.5e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_22 - 742 AAA_10 PF12846.2 304 1.1e-10 33.9 0.0 1 1 6.2e-11 2.3e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 3_9 - 188 Methyltransf_31 PF13847.1 152 2.5e-07 22.9 0.0 1 1 4.2e-09 3.1e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_20 - 1632 Viral_helicase1 PF01443.13 234 0.00024 13.1 0.0 1 2 0.00013 0.0096 7.9 0.0 1 118 863 996 863 1087 0.52 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_20 - 1632 Viral_helicase1 PF01443.13 234 0.00024 13.1 0.0 2 2 0.006 0.45 2.4 0.0 171 234 1262 1322 1217 1322 0.63 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_22 - 742 TrwB_AAD_bind PF10412.4 386 2.8e-150 492.7 0.0 1 1 9.1e-152 3.4e-150 492.4 0.0 2 386 172 561 171 561 0.99 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 877 TrwB_AAD_bind PF10412.4 386 4e-07 21.4 0.2 1 2 4.8e-08 1.8e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_40 - 877 TrwB_AAD_bind PF10412.4 386 4e-07 21.4 0.2 2 2 0.054 2 -0.7 0.1 261 317 714 770 706 773 0.92 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 1632 AAA_11 PF13086.1 236 0.00014 13.9 0.0 1 1 1.9e-06 0.00014 13.9 0.0 2 75 844 914 843 934 0.81 # 15078 # 19973 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_22 - 742 T4SS-DNA_transf PF02534.9 469 5.5e-10 30.8 0.0 1 1 3.5e-11 1.3e-09 29.6 0.0 264 363 382 478 198 511 0.82 # 20347 # 22572 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 877 T4SS-DNA_transf PF02534.9 469 0.00024 12.2 0.0 1 2 0.0047 0.18 2.8 0.0 105 182 534 605 471 624 0.82 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_40 - 877 T4SS-DNA_transf PF02534.9 469 0.00024 12.2 0.0 2 2 0.00023 0.0085 7.1 0.0 319 378 712 770 663 772 0.91 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_9 - 188 TIGR00755 TIGR00755 256 2.7e-09 28.8 0.0 1 1 4.9e-11 3.7e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 5720 # 6283 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_1 - 226 MethyltransfD12 PF02086.10 260 0.00041 12.3 0.0 1 2 0.022 1.6 0.5 0.0 178 188 21 31 14 91 0.83 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_1 - 226 MethyltransfD12 PF02086.10 260 0.00041 12.3 0.0 2 2 3.9e-05 0.003 9.5 0.0 20 46 163 189 148 197 0.78 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_40 - 877 Pox_A32 PF04665.7 241 0.00055 11.7 0.1 1 1 2.3e-05 0.0017 10.1 0.0 7 38 474 505 470 520 0.85 # 36816 # 39446 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_1 - 226 Methyltransf_15 PF09445.5 164 0.00021 13.4 0.0 1 2 0.012 0.92 1.5 0.0 53 79 4 29 2 33 0.91 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_1 - 226 Methyltransf_15 PF09445.5 164 0.00021 13.4 0.0 2 2 4.3e-05 0.0032 9.5 0.0 3 31 166 194 164 208 0.86 # 2 # 679 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/de0dd7fc-e57d-4f61-8c79-a2c708ef661e # Target file: checkm_output/bins/pm486/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm486/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/de0dd7fc-e57d-4f61-8c79-a2c708ef661e checkm_output/bins/pm486/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:34 2020 # [ok]