# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 703 Mg_chelatase PF01078.16 207 0.00068 12.9 0.0 1 1 6.9e-06 0.0016 11.7 0.0 14 52 511 549 505 570 0.81 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 3_10 - 234 UPF0020 PF01170.13 180 8e-06 19.6 0.0 1 2 0.0001 0.012 9.3 0.0 103 120 17 34 5 80 0.83 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_10 - 234 UPF0020 PF01170.13 180 8e-06 19.6 0.0 2 2 0.00019 0.021 8.4 0.0 28 51 170 193 165 227 0.75 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_22 - 188 UPF0020 PF01170.13 180 2.9e-05 17.8 0.0 1 1 1.5e-06 0.00017 15.3 0.0 19 54 41 78 39 138 0.74 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 3_22 - 188 RrnaAD PF00398.15 262 5.7e-07 22.8 0.0 1 1 3.4e-09 7.7e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 11_1 - 193 DUF1776 PF08643.5 299 9.5e-05 15.7 0.0 1 1 5.8e-07 0.00013 15.2 0.0 107 196 42 125 36 129 0.85 # 278 # 856 # 1 # ID=11_1;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.522 3_2 - 402 MipZ PF09140.6 261 4.3e-06 20.0 0.0 1 2 0.0027 0.61 3.1 0.0 3 50 111 163 109 193 0.73 # 1475 # 2680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 3_2 - 402 MipZ PF09140.6 261 4.3e-06 20.0 0.0 2 2 8.7e-07 0.0002 14.6 0.0 87 136 233 282 220 296 0.87 # 1475 # 2680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 6_1 - 181 SSB PF00436.20 104 9.5e-42 135.2 0.3 1 1 5.1e-44 1.2e-41 134.9 0.3 1 99 6 105 6 113 0.97 # 271 # 813 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 3_22 - 188 Methyltransf_18 PF12847.2 112 2.2e-07 25.5 0.0 1 1 1.6e-09 3.6e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 2_40 - 1753 UvrD_C_2 PF13538.1 104 1.7e-07 25.4 0.2 1 1 4.8e-09 1.1e-06 22.8 0.0 3 102 1339 1442 1335 1444 0.76 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_20 - 880 DUF87 PF01935.12 229 1e-05 19.5 0.0 1 1 6.1e-07 7e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 10946 # 13585 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 703 DUF87 PF01935.12 229 0.00027 14.9 0.1 1 1 5e-06 0.00057 13.8 0.1 24 44 520 540 512 551 0.92 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA_22 PF13401.1 131 5.1e-05 17.5 0.1 1 2 5.4e-06 0.00061 14.0 0.0 5 24 520 539 516 566 0.88 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA_22 PF13401.1 131 5.1e-05 17.5 0.1 2 2 0.071 8.1 0.7 0.0 56 105 620 668 605 686 0.75 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_40 - 1753 AAA_22 PF13401.1 131 0.00055 14.2 0.0 1 2 0.012 1.3 3.2 0.0 89 121 504 535 469 537 0.72 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_40 - 1753 AAA_22 PF13401.1 131 0.00055 14.2 0.0 2 2 0.00079 0.09 7.0 0.0 3 28 985 1010 982 1063 0.79 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 7_2 - 478 DNA_methylase PF00145.12 335 5e-79 259.8 0.0 1 1 4.4e-81 1e-78 258.8 0.0 1 331 96 457 96 460 0.86 # 394 # 1827 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 3_10 - 234 N6_N4_Mtase PF01555.13 231 2.6e-32 106.2 0.0 1 2 6.8e-13 1.5e-10 34.9 0.0 1 113 21 130 21 137 0.85 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_10 - 234 N6_N4_Mtase PF01555.13 231 2.6e-32 106.2 0.0 2 2 2e-23 4.6e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_19 - 703 AAA_17 PF13207.1 121 4.2e-07 24.9 0.0 1 1 1.1e-08 1.3e-06 23.4 0.0 2 88 522 606 521 642 0.65 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_39 - 771 AAA_17 PF13207.1 121 0.0038 12.1 0.7 1 1 8.7e-05 0.0099 10.8 0.1 3 37 189 221 187 355 0.74 # 28306 # 30618 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_19 - 703 AAA_21 PF13304.1 303 8.6e-09 29.8 0.4 1 1 1.8e-09 4.2e-07 24.2 0.4 3 278 523 668 522 683 0.74 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 Miro PF08477.8 119 0.0011 13.6 0.0 1 1 1.2e-05 0.0028 12.3 0.0 1 24 521 544 521 577 0.74 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_33 - 1178 Helicase_C PF00271.26 78 1.4e-07 25.4 0.0 1 1 1.2e-09 2.8e-07 24.4 0.0 8 78 631 705 625 705 0.88 # 22884 # 26417 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_19 - 703 T2SE PF00437.15 272 4.5e-05 16.5 0.0 1 1 3.4e-07 7.7e-05 15.7 0.0 115 160 506 551 463 570 0.84 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 SMC_N PF02463.14 220 5.5e-10 32.9 0.1 1 1 2.6e-10 5.9e-08 26.2 0.1 136 212 629 699 496 701 0.77 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_39 - 771 AAA_16 PF13191.1 185 6.4e-06 20.3 0.0 1 1 2.8e-07 3.2e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 28306 # 30618 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_19 - 703 AAA_16 PF13191.1 185 3.8e-05 17.8 0.0 1 1 9.3e-07 0.00011 16.3 0.0 15 44 511 539 506 566 0.84 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA_23 PF13476.1 202 4.7e-05 17.8 0.1 1 1 5.1e-07 0.00012 16.6 0.1 9 42 506 542 500 597 0.88 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA_18 PF13238.1 129 4.5e-05 17.9 0.1 1 1 7.7e-07 0.00018 15.9 0.0 1 21 522 542 522 587 0.77 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 11_1 - 193 adh_short PF00106.20 167 7.3e-21 68.8 0.0 1 1 4e-23 9.1e-21 68.5 0.0 57 166 3 115 1 116 0.97 # 278 # 856 # 1 # ID=11_1;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.522 3_2 - 402 CbiA PF01656.18 195 3.5e-18 59.8 0.0 1 1 2.8e-20 6.4e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 1475 # 2680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_19 - 703 AAA_14 PF13173.1 128 0.00039 14.4 0.0 1 2 2.4e-05 0.0055 10.7 0.0 4 47 521 564 518 584 0.73 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA_14 PF13173.1 128 0.00039 14.4 0.0 2 2 0.031 7 0.7 0.0 53 93 638 681 629 695 0.65 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA_29 PF13555.1 62 3.3e-05 17.5 0.0 1 1 3.5e-07 7.9e-05 16.3 0.0 14 40 511 536 505 551 0.79 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA PF00004.24 132 5.8e-05 17.4 0.1 1 2 8.1e-05 0.018 9.3 0.0 3 22 524 543 522 584 0.76 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA PF00004.24 132 5.8e-05 17.4 0.1 2 2 0.0011 0.26 5.6 0.0 44 74 634 663 618 694 0.77 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 3_22 - 188 N6_Mtase PF02384.11 311 0.00022 14.4 0.0 1 2 2.6e-05 0.006 9.7 0.0 28 71 32 75 21 93 0.82 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 3_22 - 188 N6_Mtase PF02384.11 311 0.00022 14.4 0.0 2 2 0.0056 1.3 2.0 0.0 124 138 111 125 95 133 0.81 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_19 - 703 DUF258 PF03193.11 161 0.00083 12.6 0.0 1 1 7.4e-06 0.0017 11.6 0.0 25 57 508 541 491 554 0.80 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_39 - 771 TraG-D_C PF12696.2 128 2.1e-19 63.7 0.0 1 1 2.2e-21 5e-19 62.5 0.0 1 127 419 541 419 542 0.88 # 28306 # 30618 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 3_2 - 402 AAA_31 PF13614.1 157 0.00022 15.3 0.0 1 1 5.5e-06 0.0012 12.8 0.0 108 147 235 273 230 279 0.86 # 1475 # 2680 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_19 - 703 NTPase_1 PF03266.10 168 0.00027 14.7 0.0 1 1 2.5e-06 0.00057 13.7 0.0 1 34 521 556 521 578 0.81 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 3_22 - 188 Methyltransf_26 PF13659.1 117 4.2e-13 43.5 0.1 1 1 5.9e-15 6.7e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 3_10 - 234 Methyltransf_26 PF13659.1 117 6e-11 36.5 0.2 1 2 6.4e-07 7.3e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_10 - 234 Methyltransf_26 PF13659.1 117 6e-11 36.5 0.2 2 2 3.9e-07 4.5e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_40 - 1753 AAA_30 PF13604.1 196 1.5e-44 145.9 5.7 1 2 2e-06 0.00022 14.9 0.7 9 126 423 535 421 561 0.84 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_40 - 1753 AAA_30 PF13604.1 196 1.5e-44 145.9 5.7 2 2 2.8e-42 3.1e-40 131.9 0.4 2 186 970 1157 969 1161 0.94 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_19 - 703 AAA_30 PF13604.1 196 0.002 11.7 0.0 1 1 3.2e-05 0.0037 10.9 0.0 20 48 521 549 513 555 0.79 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 FtsK_SpoIIIE PF01580.13 205 0.00012 15.6 0.0 1 1 1.9e-06 0.00022 14.8 0.0 29 58 510 539 500 569 0.87 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_20 - 880 FtsK_SpoIIIE PF01580.13 205 0.00025 14.6 0.0 1 1 5.4e-06 0.00062 13.3 0.0 39 63 480 506 466 508 0.85 # 10946 # 13585 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_22 - 188 MTS PF05175.9 170 2.5e-09 30.8 0.0 1 1 1.5e-11 3.4e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 11_3 - 129 AAA_35 PF14516.1 331 0.00033 13.4 0.7 1 2 2.7e-06 0.00062 12.5 0.5 186 226 70 112 61 118 0.75 # 1686 # 2072 # -1 # ID=11_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 11_3 - 129 AAA_35 PF14516.1 331 0.00033 13.4 0.7 2 2 0.0024 0.55 2.8 0.1 180 214 93 127 90 128 0.90 # 1686 # 2072 # -1 # ID=11_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_19 - 703 ABC_tran PF00005.22 137 1.3e-32 107.0 0.0 1 1 9.5e-35 2.2e-32 106.3 0.0 1 137 509 658 509 658 0.96 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 3_10 - 234 Cons_hypoth95 PF03602.10 183 9.1e-06 19.2 0.0 1 2 0.00016 0.037 7.4 0.0 113 169 19 77 12 86 0.70 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_10 - 234 Cons_hypoth95 PF03602.10 183 9.1e-06 19.2 0.0 2 2 3.1e-05 0.0071 9.8 0.0 20 60 149 188 142 225 0.73 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_40 - 1753 AAA_19 PF13245.1 76 5.2e-06 20.3 0.5 1 1 4.5e-08 5.2e-06 20.3 0.5 8 74 983 1046 975 1049 0.71 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_19 - 703 AAA_19 PF13245.1 76 0.00015 15.6 0.1 1 1 2.7e-06 0.00031 14.6 0.1 9 35 519 543 512 554 0.79 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 3_22 - 188 Methyltransf_2 PF00891.13 242 0.0027 11.0 0.0 1 1 1.7e-05 0.004 10.4 0.0 111 159 60 110 40 119 0.83 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 2_20 - 880 AAA_10 PF12846.2 304 1.8e-45 149.7 0.0 1 1 3.7e-47 2.8e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 10946 # 13585 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_39 - 771 AAA_10 PF12846.2 304 3.6e-09 30.5 0.0 1 1 1.4e-08 1e-06 22.4 0.0 3 296 187 494 186 499 0.63 # 28306 # 30618 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_19 - 703 AAA_10 PF12846.2 304 0.0018 11.8 0.1 1 1 8.2e-05 0.0062 10.0 0.1 3 33 521 551 519 562 0.81 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 4_10 - 190 NodS PF05401.6 201 0.0017 11.8 0.0 1 2 0.097 11 -0.6 0.0 42 154 33 58 18 68 0.63 # 7016 # 7585 # 1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.675 4_10 - 190 NodS PF05401.6 201 0.0017 11.8 0.0 2 2 5.6e-05 0.0063 9.9 0.0 25 70 98 143 86 171 0.84 # 7016 # 7585 # 1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.675 1_15 - 190 NodS PF05401.6 201 0.0019 11.7 0.0 1 2 0.056 6.3 0.2 0.0 128 155 31 59 14 69 0.60 # 10108 # 10677 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_15 - 190 NodS PF05401.6 201 0.0019 11.7 0.0 2 2 9.2e-05 0.011 9.2 0.0 25 70 98 143 87 170 0.84 # 10108 # 10677 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 11_1 - 193 adh_short_C2 PF13561.1 241 8e-22 72.2 0.0 1 1 3.9e-24 8.8e-22 72.1 0.0 49 239 3 188 1 190 0.95 # 278 # 856 # 1 # ID=11_1;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.522 1_19 - 703 SbcCD_C PF13558.1 90 0.00097 13.1 0.1 1 1 2.2e-05 0.005 10.9 0.1 55 88 646 672 612 674 0.76 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_33 - 1178 ResIII PF04851.10 184 2.4e-07 24.8 0.0 1 1 1.9e-09 4.2e-07 24.0 0.0 4 164 307 445 304 471 0.79 # 22884 # 26417 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_19 - 703 DUF3584 PF12128.3 1201 0.001 10.5 0.1 1 1 6.3e-06 0.0014 10.0 0.1 11 37 514 539 506 543 0.91 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_33 - 1178 DEAD PF00270.24 169 3e-24 79.4 0.0 1 1 2.5e-26 5.6e-24 78.6 0.0 4 163 311 471 308 477 0.81 # 22884 # 26417 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_19 - 703 DUF853 PF05872.7 504 0.0016 10.8 0.0 1 1 1.2e-05 0.0028 10.0 0.0 22 54 520 552 507 563 0.80 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_39 - 771 TrwB_AAD_bind PF10412.4 386 2.4e-148 487.9 0.0 1 1 2.6e-150 3e-148 487.5 0.0 2 386 172 561 171 561 0.99 # 28306 # 30618 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 2_20 - 880 TrwB_AAD_bind PF10412.4 386 3.5e-05 16.6 0.2 1 1 8e-07 9.2e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 10946 # 13585 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_40 - 1753 AAA_11 PF13086.1 236 5.8e-06 20.1 0.1 1 3 9.3e-07 0.00021 15.0 0.0 2 72 970 1037 969 1064 0.82 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_40 - 1753 AAA_11 PF13086.1 236 5.8e-06 20.1 0.1 2 3 0.044 10 -0.4 0.0 206 232 1083 1107 1043 1109 0.73 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_40 - 1753 AAA_11 PF13086.1 236 5.8e-06 20.1 0.1 3 3 0.033 7.6 0.1 0.0 3 34 1181 1211 1179 1330 0.69 # 30618 # 35876 # 1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_39 - 771 T4SS-DNA_transf PF02534.9 469 4.3e-08 26.1 0.0 1 2 0.08 18 -2.3 0.0 130 199 262 330 253 360 0.69 # 28306 # 30618 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 2_39 - 771 T4SS-DNA_transf PF02534.9 469 4.3e-08 26.1 0.0 2 2 4.6e-10 1e-07 24.9 0.0 274 392 392 506 361 559 0.74 # 28306 # 30618 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 3_22 - 188 TIGR00755 TIGR00755 256 1.5e-07 24.7 0.0 1 1 9e-10 2.1e-07 24.2 0.0 8 105 29 123 26 128 0.90 # 17500 # 18063 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_37 - 1041 ArgK PF03308.11 267 0.0013 11.6 0.0 1 1 1.4e-05 0.0031 10.3 0.0 19 64 236 278 226 284 0.80 # 30496 # 33618 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.517 2_20 - 880 Pox_A32 PF04665.7 241 0.00017 15.0 0.0 1 1 1.5e-06 0.00035 14.0 0.0 6 40 474 508 470 523 0.82 # 10946 # 13585 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 703 NACHT PF05729.7 166 0.0021 11.8 0.7 1 1 1.6e-05 0.0036 11.0 0.1 3 21 522 540 520 548 0.89 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_19 - 703 AAA_25 PF13481.1 194 0.00044 13.7 0.1 1 1 7.4e-06 0.00084 12.8 0.1 30 54 516 540 508 545 0.89 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_37 - 1041 AAA_25 PF13481.1 194 0.0013 12.3 0.0 1 1 3.6e-05 0.0041 10.6 0.0 21 66 231 286 218 355 0.78 # 30496 # 33618 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.517 3_10 - 234 Methyltransf_15 PF09445.5 164 0.0017 12.0 0.0 1 2 0.023 5.2 0.6 0.0 53 80 4 30 2 38 0.91 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_10 - 234 Methyltransf_15 PF09445.5 164 0.0017 12.0 0.0 2 2 7e-05 0.016 8.8 0.0 3 30 173 200 171 213 0.90 # 9957 # 10658 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_19 - 703 AAA_28 PF13521.1 163 0.00016 15.7 0.5 1 1 1.3e-06 0.00029 14.9 0.5 2 19 522 539 521 549 0.91 # 12578 # 14686 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/13035126-5660-4055-a920-63cb4c329571 # Target file: checkm_output/bins/pm484/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm484/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/13035126-5660-4055-a920-63cb4c329571 checkm_output/bins/pm484/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:30 2020 # [ok]