# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_120 - 228 UPF0020 PF01170.13 180 5.8e-06 19.4 0.0 1 2 8.8e-05 0.013 8.5 0.0 102 123 16 37 2 89 0.68 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_120 - 228 UPF0020 PF01170.13 180 5.8e-06 19.4 0.0 2 2 6.2e-05 0.0089 9.0 0.0 28 54 163 189 158 221 0.67 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_131 - 742 cobW PF02492.14 178 0.00067 12.6 0.1 1 1 7.7e-06 0.0011 11.8 0.1 2 23 48 71 47 82 0.78 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_24 - 220 IstB_IS21 PF01695.12 178 7.5e-61 198.0 0.1 1 2 0.045 6.5 -0.5 0.0 64 96 25 56 24 60 0.64 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 IstB_IS21 PF01695.12 178 7.5e-61 198.0 0.1 2 2 1.3e-62 1.9e-60 196.7 0.0 1 153 56 209 56 214 0.97 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_124 - 389 MipZ PF09140.6 261 6.2e-06 18.8 0.4 1 2 3.5e-06 0.00051 12.6 0.0 2 47 108 153 107 157 0.87 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_124 - 389 MipZ PF09140.6 261 6.2e-06 18.8 0.4 2 2 0.0011 0.16 4.4 0.0 88 134 224 270 197 292 0.84 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_112 - 180 SSB PF00436.20 104 4.1e-39 126.1 0.3 1 1 3.5e-41 5.1e-39 125.8 0.3 1 101 6 109 6 112 0.96 # 91093 # 91632 # -1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.596 1_53 - 1757 UvrD_C_2 PF13538.1 104 7e-08 26.0 1.0 1 2 0.013 1.9 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 46593 # 51863 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 1757 UvrD_C_2 PF13538.1 104 7e-08 26.0 1.0 2 2 1.4e-08 2e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 46593 # 51863 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_18 - 716 tRNA_lig_kinase PF08303.6 168 0.00077 12.8 0.0 1 1 9.9e-06 0.0014 11.9 0.0 5 56 506 559 503 574 0.82 # 18204 # 20351 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_83 - 877 DUF87 PF01935.12 229 1.4e-07 25.0 0.0 1 1 8e-09 3.8e-07 23.5 0.0 26 222 483 670 469 677 0.77 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_91 - 107 DUF87 PF01935.12 229 0.00069 12.9 0.0 1 1 2.1e-05 0.001 12.3 0.0 25 50 74 99 72 103 0.91 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_57 - 326 DUF87 PF01935.12 229 0.0011 12.2 0.0 1 1 3e-05 0.0015 11.8 0.0 27 68 189 229 151 315 0.89 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_131 - 742 NB-ARC PF00931.17 287 0.002 10.4 0.9 1 1 6.6e-05 0.0096 8.2 0.9 17 110 44 205 30 219 0.72 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_24 - 220 AAA_22 PF13401.1 131 1.4e-06 21.9 0.2 1 1 1.7e-05 0.00062 13.4 0.1 6 28 104 126 99 203 0.60 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_57 - 326 AAA_22 PF13401.1 131 0.0011 12.6 0.0 1 1 8.3e-05 0.003 11.1 0.0 7 28 188 209 182 247 0.85 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_91 - 107 AAA_22 PF13401.1 131 0.0015 12.1 0.0 1 1 6.6e-05 0.0024 11.5 0.0 3 27 71 95 66 103 0.86 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_25 - 524 AAA_22 PF13401.1 131 0.0049 10.5 2.6 1 2 0.058 2.1 1.9 0.7 36 88 26 79 10 97 0.78 # 25163 # 26734 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_25 - 524 AAA_22 PF13401.1 131 0.0049 10.5 2.6 2 2 0.0018 0.066 6.8 0.0 12 42 266 296 264 412 0.71 # 25163 # 26734 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_131 - 742 KAP_NTPase PF07693.9 325 2e-72 237.2 0.0 1 1 2.1e-74 3e-72 236.7 0.0 1 325 27 334 27 334 0.96 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_120 - 228 N6_N4_Mtase PF01555.13 231 1.1e-36 119.9 0.0 1 1 3.3e-36 4.7e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_57 - 326 AAA_17 PF13207.1 121 0.0002 15.6 0.0 1 1 8.3e-06 0.0006 14.1 0.0 3 27 189 217 187 262 0.68 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 220 AAA_17 PF13207.1 121 0.0018 12.6 0.0 1 1 9.1e-05 0.0066 10.7 0.0 2 17 105 120 104 160 0.90 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_18 - 716 AAA_21 PF13304.1 303 3.3e-05 17.4 0.0 1 2 0.00034 0.049 7.0 0.0 5 28 506 531 503 560 0.70 # 18204 # 20351 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_18 - 716 AAA_21 PF13304.1 303 3.3e-05 17.4 0.0 2 2 0.00012 0.018 8.4 0.0 194 271 569 644 535 671 0.69 # 18204 # 20351 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_18 - 716 Miro PF08477.8 119 0.00022 15.1 0.0 1 1 4e-06 0.00058 13.8 0.0 1 25 502 526 502 555 0.83 # 18204 # 20351 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_83 - 877 MobB PF03205.9 140 0.00042 13.5 0.2 1 2 5.4e-05 0.0039 10.3 0.0 4 37 484 516 482 524 0.79 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_83 - 877 MobB PF03205.9 140 0.00042 13.5 0.2 2 2 0.069 5 0.3 0.0 25 64 696 733 691 745 0.86 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_57 - 326 MobB PF03205.9 140 0.00048 13.3 0.0 1 1 1.3e-05 0.00095 12.3 0.0 7 34 192 219 188 225 0.89 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_124 - 389 ArsA_ATPase PF02374.10 305 2.5e-06 20.1 0.4 1 2 1.7e-06 0.00024 13.6 0.1 9 36 115 142 109 151 0.89 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_124 - 389 ArsA_ATPase PF02374.10 305 2.5e-06 20.1 0.4 2 2 0.0011 0.16 4.3 0.0 123 136 231 244 221 251 0.84 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_24 - 220 PhoH PF02562.11 205 1.1e-07 24.7 0.1 1 2 0.077 11 -1.4 0.0 83 107 39 63 4 76 0.67 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 PhoH PF02562.11 205 1.1e-07 24.7 0.1 2 2 3.3e-09 4.8e-07 22.6 0.0 11 47 94 130 84 140 0.80 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_91 - 107 T2SE PF00437.15 272 0.0014 10.9 0.0 1 1 1.1e-05 0.0016 10.7 0.0 109 154 56 98 33 103 0.81 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_57 - 326 Zeta_toxin PF06414.7 201 0.00037 13.0 0.0 1 2 0.076 5.5 -0.6 0.0 106 127 153 174 147 178 0.86 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 326 Zeta_toxin PF06414.7 201 0.00037 13.0 0.0 2 2 2.9e-05 0.0021 10.6 0.0 21 49 190 219 182 233 0.87 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_91 - 107 Zeta_toxin PF06414.7 201 0.0018 10.8 0.1 1 1 3.4e-05 0.0024 10.4 0.1 14 39 70 95 59 102 0.80 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_18 - 716 SMC_N PF02463.14 220 1.9e-05 17.4 0.0 1 1 2.4e-07 3.5e-05 16.5 0.0 123 212 41 684 21 690 0.73 # 18204 # 20351 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_124 - 389 VirC1 PF07015.6 231 9.6e-05 14.9 0.1 1 2 0.00028 0.041 6.3 0.0 4 42 109 147 107 154 0.91 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_124 - 389 VirC1 PF07015.6 231 9.6e-05 14.9 0.1 2 2 0.0003 0.044 6.2 0.1 84 139 235 290 222 312 0.77 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_131 - 742 Arch_ATPase PF01637.13 234 0.00078 12.6 0.1 1 1 0.00012 0.0085 9.2 0.1 20 51 46 80 38 235 0.75 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_24 - 220 Arch_ATPase PF01637.13 234 0.00089 12.4 0.1 1 1 5.7e-05 0.0041 10.2 0.0 8 37 90 119 87 138 0.80 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_57 - 326 AAA_16 PF13191.1 185 6.5e-06 19.7 0.0 1 1 2.7e-07 1e-05 19.0 0.0 21 62 182 224 179 264 0.80 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_131 - 742 AAA_16 PF13191.1 185 2.7e-05 17.7 2.9 1 1 5.9e-06 0.00021 14.7 1.1 24 175 46 225 36 233 0.49 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_24 - 220 AAA_16 PF13191.1 185 0.00011 15.7 1.8 1 1 8.8e-06 0.00032 14.1 0.2 21 41 99 119 87 160 0.77 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_91 - 107 AAA_16 PF13191.1 185 0.00036 14.0 0.0 1 1 1.8e-05 0.00065 13.1 0.0 22 51 70 99 63 104 0.90 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_10 - 513 AAA_13 PF13166.1 712 0.0003 12.7 0.7 1 1 2.7e-06 0.00039 12.4 0.1 362 438 6 82 1 102 0.91 # 7257 # 8795 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.585 1_124 - 389 CbiA PF01656.18 195 1.4e-36 119.1 0.0 1 1 1.3e-38 1.9e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_24 - 220 AAA_14 PF13173.1 128 1.4e-06 21.7 0.0 1 1 1.7e-08 2.4e-06 20.9 0.0 2 95 102 202 101 215 0.67 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 AAA_29 PF13555.1 62 0.0009 12.2 0.0 1 1 1.1e-05 0.0016 11.4 0.0 19 59 98 139 89 141 0.72 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 AAA PF00004.24 132 2.6e-07 24.4 0.0 1 1 3e-09 4.4e-07 23.6 0.0 1 74 105 180 105 207 0.75 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 Bac_DnaA PF00308.13 219 2.6e-09 30.4 0.0 1 1 2.5e-11 3.6e-09 30.0 0.0 37 134 105 201 79 206 0.88 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 Sigma54_activat PF00158.21 168 0.00014 14.8 0.1 1 1 5e-06 0.00072 12.5 0.1 18 58 98 138 81 197 0.69 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 DUF258 PF03193.11 161 8.7e-06 18.4 0.0 1 1 8.9e-08 1.3e-05 17.9 0.0 21 79 88 158 70 194 0.72 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_56 - 402 TraG-D_C PF12696.2 128 4.6e-21 68.5 0.0 1 1 4.9e-23 7.1e-21 67.9 0.0 1 127 91 213 91 214 0.86 # 52579 # 53784 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.547 1_124 - 389 AAA_31 PF13614.1 157 1.4e-09 31.5 0.0 1 2 1.4e-08 2e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_124 - 389 AAA_31 PF13614.1 157 1.4e-09 31.5 0.0 2 2 0.00018 0.026 7.9 0.1 110 152 227 268 223 272 0.84 # 99009 # 100175 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_24 - 220 NTPase_1 PF03266.10 168 0.00021 14.5 0.0 1 2 0.0014 0.21 4.7 0.0 2 30 105 133 104 140 0.79 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 NTPase_1 PF03266.10 168 0.00021 14.5 0.0 2 2 0.00018 0.026 7.6 0.0 88 113 157 182 144 204 0.72 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_120 - 228 Methyltransf_26 PF13659.1 117 2.1e-13 43.8 0.1 1 2 3.5e-09 5.1e-07 23.2 0.0 53 114 3 71 2 74 0.78 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_120 - 228 Methyltransf_26 PF13659.1 117 2.1e-13 43.8 0.1 2 2 9.7e-08 1.4e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_53 - 1757 AAA_30 PF13604.1 196 3.1e-44 144.3 14.2 1 2 1.9e-05 0.0014 11.7 3.5 7 147 420 552 416 562 0.84 # 46593 # 51863 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 1757 AAA_30 PF13604.1 196 3.1e-44 144.3 14.2 2 2 7.8e-44 5.7e-42 136.9 1.9 1 186 968 1156 968 1162 0.94 # 46593 # 51863 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_57 - 326 AAA_30 PF13604.1 196 0.0004 13.4 0.0 1 1 1.2e-05 0.0009 12.3 0.0 21 57 188 224 180 231 0.85 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_91 - 107 FtsK_SpoIIIE PF01580.13 205 4.9e-06 19.5 0.0 1 1 8.1e-08 5.9e-06 19.3 0.0 27 66 60 100 41 103 0.83 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_83 - 877 FtsK_SpoIIIE PF01580.13 205 7.1e-06 19.0 0.2 1 2 4.1e-06 0.00029 13.7 0.0 39 63 477 505 464 508 0.84 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_83 - 877 FtsK_SpoIIIE PF01580.13 205 7.1e-06 19.0 0.2 2 2 0.0094 0.68 2.8 0.1 75 167 531 627 530 634 0.85 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_18 - 716 ABC_tran PF00005.22 137 6e-31 101.0 0.0 1 1 2.4e-32 1.2e-30 100.1 0.0 1 136 490 640 490 641 0.91 # 18204 # 20351 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_131 - 742 ABC_tran PF00005.22 137 2.9e-05 17.8 0.0 1 1 2.3e-06 0.00011 16.0 0.0 5 36 40 71 37 88 0.89 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_24 - 220 ABC_tran PF00005.22 137 0.00026 14.8 0.2 1 1 2.7e-05 0.0013 12.5 0.0 8 30 99 121 93 141 0.86 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_120 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 18.2 0.0 1 2 0.00024 0.035 6.9 0.0 112 146 18 54 2 82 0.65 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_120 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 18.2 0.0 2 2 4e-05 0.0058 9.4 0.0 41 62 162 183 145 218 0.78 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_57 - 326 DAP3 PF10236.4 309 0.0016 10.8 0.0 1 1 1.6e-05 0.0024 10.2 0.0 24 65 186 227 180 241 0.79 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 220 RuvB_N PF05496.7 234 0.00045 12.7 0.0 1 1 5.1e-06 0.00074 12.0 0.0 50 119 102 182 88 190 0.63 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_53 - 1757 AAA_19 PF13245.1 76 5e-07 22.9 3.2 1 1 1.3e-08 6.5e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 46593 # 51863 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_24 - 220 AAA_19 PF13245.1 76 0.0005 13.3 0.0 1 1 2.6e-05 0.0012 12.0 0.0 10 37 103 129 96 151 0.81 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_131 - 742 AAA_19 PF13245.1 76 0.00089 12.5 0.0 1 1 4.3e-05 0.0021 11.3 0.0 10 50 46 85 38 86 0.82 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_83 - 877 AAA_10 PF12846.2 304 2e-49 162.0 0.1 1 1 1.2e-50 3.5e-49 161.2 0.1 1 294 480 769 480 775 0.89 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_56 - 402 AAA_10 PF12846.2 304 5e-06 19.5 0.0 1 1 2.6e-07 7.5e-06 18.9 0.0 202 296 71 166 43 172 0.81 # 52579 # 53784 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.547 1_24 - 220 AAA_10 PF12846.2 304 8.1e-06 18.8 0.5 1 2 0.098 2.8 0.6 0.1 127 169 38 82 7 95 0.68 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 AAA_10 PF12846.2 304 8.1e-06 18.8 0.5 2 2 3.2e-06 9.3e-05 15.4 0.0 1 33 102 134 102 174 0.85 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_57 - 326 AAA_10 PF12846.2 304 5.9e-05 16.0 0.0 1 1 3e-06 8.8e-05 15.4 0.0 3 43 187 227 186 310 0.91 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_91 - 107 AAA_10 PF12846.2 304 0.00043 13.2 0.0 1 1 3.8e-05 0.0011 11.8 0.0 2 24 73 95 72 100 0.87 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_24 - 220 ResIII PF04851.10 184 0.0003 14.1 0.0 1 2 4.1e-05 0.0059 9.9 0.0 8 50 89 127 50 135 0.77 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 ResIII PF04851.10 184 0.0003 14.1 0.0 2 2 0.0064 0.93 2.7 0.0 112 163 131 181 128 204 0.71 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_10 - 513 DUF3584 PF12128.3 1201 0.00061 10.6 2.3 1 1 7.5e-06 0.0011 9.7 2.3 304 377 12 86 5 100 0.87 # 7257 # 8795 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.585 1_56 - 402 TrwB_AAD_bind PF10412.4 386 5.5e-87 285.2 0.0 1 1 1.9e-88 6.7e-87 284.9 0.0 161 386 2 233 1 233 0.98 # 52579 # 53784 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.547 1_57 - 326 TrwB_AAD_bind PF10412.4 386 6.4e-53 173.1 0.0 1 1 2.3e-54 8.3e-53 172.7 0.0 2 146 172 315 171 321 0.98 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_83 - 877 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.8 0.1 1 2 9.6e-08 3.5e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_83 - 877 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.8 0.1 2 2 0.082 3 -0.3 0.0 261 317 714 770 686 773 0.92 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_91 - 107 TrwB_AAD_bind PF10412.4 386 0.00037 12.6 0.0 1 1 1.4e-05 0.00051 12.1 0.0 5 42 62 99 58 103 0.88 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_53 - 1757 AAA_11 PF13086.1 236 0.00013 15.0 1.6 1 1 3.1e-06 0.00045 13.2 0.0 2 75 969 1039 968 1059 0.80 # 46593 # 51863 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_56 - 402 T4SS-DNA_transf PF02534.9 469 1.2e-09 30.6 0.0 1 1 2.3e-11 1.7e-09 30.2 0.0 269 364 59 151 34 185 0.77 # 52579 # 53784 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.547 1_83 - 877 T4SS-DNA_transf PF02534.9 469 0.00033 12.7 0.0 1 2 0.0035 0.25 3.2 0.0 105 186 534 609 471 625 0.83 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_83 - 877 T4SS-DNA_transf PF02534.9 469 0.00033 12.7 0.0 2 2 0.00022 0.016 7.1 0.0 319 378 712 770 664 772 0.90 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_120 - 228 MethyltransfD12 PF02086.10 260 0.00088 12.2 0.0 1 2 0.025 3.6 0.3 0.0 178 188 21 31 15 86 0.85 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_120 - 228 MethyltransfD12 PF02086.10 260 0.00088 12.2 0.0 2 2 4e-05 0.0058 9.5 0.0 20 46 163 189 148 197 0.78 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_91 - 107 Pox_A32 PF04665.7 241 0.00012 14.9 0.0 1 2 0.033 2.4 0.7 0.0 8 28 46 66 40 70 0.75 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_91 - 107 Pox_A32 PF04665.7 241 0.00012 14.9 0.0 2 2 5.6e-06 0.00041 13.1 0.0 7 42 66 101 60 104 0.89 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_83 - 877 Pox_A32 PF04665.7 241 0.0011 11.7 0.0 1 1 4.6e-05 0.0033 10.1 0.0 7 38 474 505 470 520 0.85 # 71987 # 74617 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 657 Plug PF07715.10 108 1.2e-24 80.1 1.9 1 1 2.7e-26 3.9e-24 78.5 1.9 3 108 46 149 44 149 0.94 # 9029 # 10999 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_91 - 107 RNA_helicase PF00910.17 107 0.00023 14.8 0.0 1 1 2.7e-06 0.0004 14.0 0.0 1 29 75 103 75 106 0.91 # 77399 # 77719 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_131 - 742 UPF0079 PF02367.12 123 0.0005 13.1 0.0 1 1 7.9e-06 0.0011 12.0 0.0 10 42 41 73 31 81 0.84 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_24 - 220 AAA_24 PF13479.1 213 0.0013 11.8 0.0 1 2 2.8e-05 0.0041 10.1 0.0 3 21 102 120 100 127 0.84 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 AAA_24 PF13479.1 213 0.0013 11.8 0.0 2 2 0.1 14 -1.5 0.0 12 30 151 171 133 172 0.83 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_51 - 123 BOF PF04076.8 103 8.6e-18 57.6 2.1 1 1 7.2e-20 1e-17 57.3 2.1 18 102 30 119 18 120 0.88 # 45376 # 45744 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.480 1_131 - 742 NACHT PF05729.7 166 1.2e-05 18.4 1.3 1 3 1.2e-05 0.0017 11.4 0.0 2 32 48 78 47 86 0.84 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_131 - 742 NACHT PF05729.7 166 1.2e-05 18.4 1.3 2 3 0.071 10 -0.9 0.1 74 96 182 211 169 234 0.67 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_131 - 742 NACHT PF05729.7 166 1.2e-05 18.4 1.3 3 3 0.002 0.3 4.2 0.0 48 99 478 541 461 582 0.81 # 105294 # 107519 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_24 - 220 AAA_25 PF13481.1 194 2.6e-05 17.1 0.0 1 1 2.8e-07 4.1e-05 16.5 0.0 20 58 88 127 70 177 0.79 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_120 - 228 Methyltransf_15 PF09445.5 164 0.00032 13.7 0.0 1 2 0.0095 1.4 1.9 0.0 53 80 4 30 2 34 0.92 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_120 - 228 Methyltransf_15 PF09445.5 164 0.00032 13.7 0.0 2 2 4.2e-05 0.0062 9.5 0.0 3 31 166 194 164 209 0.86 # 95418 # 96101 # -1 # ID=1_120;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_57 - 326 AAA_28 PF13521.1 163 0.00098 12.5 0.0 1 1 2.5e-05 0.0018 11.7 0.0 2 38 188 229 187 254 0.79 # 53804 # 54781 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 220 AAA_28 PF13521.1 163 0.0014 12.0 1.6 1 2 0.083 6 0.2 0.1 84 111 35 64 3 89 0.67 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 AAA_28 PF13521.1 163 0.0014 12.0 1.6 2 2 4.6e-05 0.0033 10.8 0.2 1 43 104 151 104 174 0.70 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_24 - 220 AAA_5 PF07728.9 139 0.00011 15.4 0.2 1 1 3.2e-06 0.00046 13.4 0.2 1 74 104 173 104 180 0.71 # 23955 # 24614 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2d6fdb1a-84de-4437-8339-13546726cefa # Target file: checkm_output/bins/pm480/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm480/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2d6fdb1a-84de-4437-8339-13546726cefa checkm_output/bins/pm480/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:28 2020 # [ok]