# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 156 Parvo_NS1 PF01057.12 272 7.5e-05 10.8 1.0 1 1 1.4e-05 9.6e-05 10.4 1.0 24 100 7 83 3 86 0.91 # 606 # 1073 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_3 - 198 Seryl_tRNA_N PF02403.17 108 0.00014 11.1 6.4 1 2 9.4e-05 0.00066 8.9 1.0 56 103 2 49 1 53 0.83 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_3 - 198 Seryl_tRNA_N PF02403.17 108 0.00014 11.1 6.4 2 2 0.0014 0.0099 5.1 0.4 55 102 68 114 55 115 0.76 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_5 - 664 N6_N4_Mtase PF01555.13 231 2.3e-48 153.8 0.0 1 1 9.7e-49 6.8e-48 152.2 0.0 1 228 196 522 196 524 0.85 # 5635 # 7626 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.376 1_3 - 198 AAA_13 PF13166.1 712 4.7e-05 11.0 3.4 1 1 8.2e-06 5.7e-05 10.7 3.4 364 471 4 112 1 121 0.41 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_5 - 664 Cons_hypoth95 PF03602.10 183 9.9e-06 14.2 0.0 1 1 3.1e-06 2.2e-05 13.1 0.0 104 143 186 224 163 251 0.78 # 5635 # 7626 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.376 1_4 - 879 ResIII PF04851.10 184 3.1e-31 97.8 1.2 1 1 5.8e-32 4.1e-31 97.4 0.2 3 182 44 244 42 246 0.89 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 198 DUF3584 PF12128.3 1201 1.9e-05 11.2 6.7 1 1 3.5e-06 2.5e-05 10.8 6.7 600 689 13 108 5 115 0.74 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_4 - 879 DEAD PF00270.24 169 1e-07 20.7 0.8 1 2 7.5e-08 5.3e-07 18.4 0.0 6 133 62 202 58 246 0.72 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 879 DEAD PF00270.24 169 1e-07 20.7 0.8 2 2 0.072 0.51 -1.0 0.0 88 119 327 358 294 362 0.65 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 879 UvrD-helicase PF00580.16 315 5.9e-05 11.5 3.0 1 1 4.3e-05 0.0003 9.2 3.0 15 254 72 411 59 417 0.56 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b941f923-f425-4610-97a4-398e3f77038a # Target file: checkm_output/bins/pm48/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm48/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b941f923-f425-4610-97a4-398e3f77038a checkm_output/bins/pm48/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:26 2020 # [ok]