# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 354 UPF0020 PF01170.13 180 3.4e-05 15.6 0.2 1 2 3.3e-05 0.0019 9.9 0.0 89 116 12 38 1 52 0.68 # 15066 # 16127 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.524 1_25 - 354 UPF0020 PF01170.13 180 3.4e-05 15.6 0.2 2 2 0.003 0.18 3.5 0.0 26 49 306 328 299 347 0.81 # 15066 # 16127 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.524 1_58 - 277 MipZ PF09140.6 261 0.00037 11.8 0.0 1 2 0.00017 0.0098 7.1 0.0 8 47 3 42 1 54 0.90 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_58 - 277 MipZ PF09140.6 261 0.00037 11.8 0.0 2 2 0.0033 0.2 2.8 0.0 87 126 112 151 86 241 0.70 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_25 - 354 Methyltransf_11 PF08241.7 95 0.00015 14.4 0.0 1 1 3.6e-05 0.0022 10.7 0.0 69 95 53 79 1 79 0.67 # 15066 # 16127 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.524 1_25 - 354 N6_N4_Mtase PF01555.13 231 1.1e-43 141.5 0.0 1 1 5.1e-45 3e-43 140.0 0.0 2 229 30 346 29 348 0.88 # 15066 # 16127 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.524 1_58 - 277 ArsA_ATPase PF02374.10 305 5.5e-07 21.0 0.1 1 2 8.4e-07 4.9e-05 14.6 0.0 7 36 2 31 1 40 0.88 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_58 - 277 ArsA_ATPase PF02374.10 305 5.5e-07 21.0 0.1 2 2 0.0016 0.092 3.8 0.0 125 136 122 133 112 143 0.84 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_38 - 570 Terminase_1 PF03354.10 477 4.7e-112 366.9 0.0 1 1 9.1e-114 5.4e-112 366.7 0.0 1 476 82 554 82 555 0.92 # 23007 # 24716 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 1_58 - 277 VirC1 PF07015.6 231 2.6e-06 18.8 0.3 1 2 4.5e-05 0.0026 9.0 0.0 8 42 2 36 1 42 0.93 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_58 - 277 VirC1 PF07015.6 231 2.6e-06 18.8 0.3 2 2 0.00015 0.0088 7.2 0.3 83 198 123 237 111 267 0.73 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_58 - 277 CbiA PF01656.18 195 7.3e-30 95.9 0.0 1 1 1.5e-31 9e-30 95.7 0.0 5 174 2 209 1 229 0.79 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_58 - 277 AAA_31 PF13614.1 157 3e-07 22.7 0.0 1 2 6.2e-07 3.6e-05 15.9 0.0 7 51 2 46 1 85 0.90 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_58 - 277 AAA_31 PF13614.1 157 3e-07 22.7 0.0 2 2 0.0016 0.096 4.8 0.0 115 151 118 156 94 161 0.81 # 53346 # 54176 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_25 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.6 0.1 1 2 3e-13 1.8e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 15066 # 16127 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.524 1_25 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.6 0.1 2 2 2.5e-06 0.00015 14.0 0.0 1 35 309 342 309 351 0.91 # 15066 # 16127 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.524 1_25 - 354 MTS PF05175.9 170 0.00016 13.2 0.0 1 1 6.1e-06 0.00036 12.1 0.0 73 154 3 97 1 107 0.73 # 15066 # 16127 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.524 1_32 - 403 TIGR00344 TIGR00344 847 6.1e-06 16.5 1.1 1 1 1.5e-07 8.9e-06 15.9 1.1 684 778 185 276 169 293 0.78 # 18452 # 19660 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_10 - 1325 Herpes_ori_bp PF02399.10 824 1.1e-08 25.6 0.0 1 2 1.8e-08 1.1e-06 19.0 0.0 44 198 521 675 493 685 0.80 # 4887 # 8861 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_10 - 1325 Herpes_ori_bp PF02399.10 824 1.1e-08 25.6 0.0 2 2 0.00051 0.03 4.3 0.0 271 351 721 812 699 816 0.76 # 4887 # 8861 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_54 - 204 Lambda_tail_I PF06805.7 82 6.1e-18 56.7 0.0 1 1 1.5e-19 8.8e-18 56.2 0.0 4 82 10 92 7 92 0.97 # 37052 # 37663 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6d2d14aa-c079-45d0-abef-aeff1f026eb6 # Target file: checkm_output/bins/pm476/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm476/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6d2d14aa-c079-45d0-abef-aeff1f026eb6 checkm_output/bins/pm476/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:26 2020 # [ok]