# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_30 - 234 UPF0020 PF01170.13 180 2.4e-06 19.6 0.0 1 2 0.0001 0.0034 9.3 0.0 103 120 17 34 5 80 0.83 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_30 - 234 UPF0020 PF01170.13 180 2.4e-06 19.6 0.0 2 2 0.00019 0.0063 8.4 0.0 28 51 170 193 165 227 0.75 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 676 UPF0020 PF01170.13 180 0.00016 13.6 0.1 1 2 0.00022 0.0072 8.2 0.1 31 45 209 223 201 230 0.88 # 13403 # 15430 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_17 - 676 UPF0020 PF01170.13 180 0.00016 13.6 0.1 2 2 0.01 0.35 2.7 0.0 106 125 292 311 272 318 0.79 # 13403 # 15430 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_23 - 402 MipZ PF09140.6 261 5.9e-07 21.1 0.4 1 2 3.3e-05 0.0022 9.4 0.1 1 50 110 164 110 192 0.75 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 402 MipZ PF09140.6 261 5.9e-07 21.1 0.4 2 2 2.9e-05 0.002 9.6 0.0 90 135 237 282 217 287 0.85 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_15 - 1086 DEAD_2 PF06733.10 174 0.00055 11.7 0.2 1 1 2.2e-05 0.0015 10.3 0.0 122 156 412 444 402 454 0.86 # 8832 # 12089 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_30 - 234 N6_N4_Mtase PF01555.13 231 7.7e-33 106.2 0.0 1 2 6.8e-13 4.5e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_30 - 234 N6_N4_Mtase PF01555.13 231 7.7e-33 106.2 0.0 2 2 2e-23 1.3e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_23 - 402 ArsA_ATPase PF02374.10 305 9.2e-06 17.2 0.0 1 1 3e-07 2e-05 16.0 0.0 4 136 113 255 110 257 0.75 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 402 VirC1 PF07015.6 231 9.8e-05 13.8 0.0 1 3 0.082 5.5 -1.7 0.0 71 86 57 72 49 82 0.87 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 402 VirC1 PF07015.6 231 9.8e-05 13.8 0.0 2 3 0.015 0.99 0.7 0.0 4 26 112 134 110 141 0.83 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 402 VirC1 PF07015.6 231 9.8e-05 13.8 0.0 3 3 3.1e-05 0.0021 9.5 0.0 82 136 244 298 221 316 0.86 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 402 Fer4_NifH PF00142.13 273 6.9e-06 17.7 0.0 1 1 2e-07 1.4e-05 16.7 0.0 7 72 117 187 112 198 0.80 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 402 CbiA PF01656.18 195 5.8e-24 76.9 0.1 1 1 1.9e-25 1.3e-23 75.8 0.0 1 148 112 299 112 346 0.76 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_17 - 676 N6_Mtase PF02384.11 311 9.3e-53 171.6 0.0 1 1 2.1e-54 1.4e-52 171.0 0.0 5 275 155 460 152 471 0.84 # 13403 # 15430 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_23 - 402 AAA_31 PF13614.1 157 9.7e-08 24.4 0.3 1 2 2.8e-05 0.0019 10.5 0.0 2 71 111 183 110 211 0.76 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 402 AAA_31 PF13614.1 157 9.7e-08 24.4 0.3 2 2 1.6e-05 0.0011 11.3 0.1 110 148 238 275 233 280 0.89 # 17662 # 18867 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_30 - 234 Methyltransf_26 PF13659.1 117 1.8e-11 36.5 0.2 1 2 6.4e-07 2.1e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_30 - 234 Methyltransf_26 PF13659.1 117 1.8e-11 36.5 0.2 2 2 3.9e-07 1.3e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 676 Methyltransf_26 PF13659.1 117 7.9e-09 28.0 0.0 1 1 5.6e-10 1.9e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 13403 # 15430 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_30 - 234 Cons_hypoth95 PF03602.10 183 2.7e-06 19.2 0.0 1 2 0.00016 0.011 7.4 0.0 113 169 19 77 12 86 0.70 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_30 - 234 Cons_hypoth95 PF03602.10 183 2.7e-06 19.2 0.0 2 2 3.1e-05 0.0021 9.8 0.0 20 60 149 188 142 225 0.73 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_15 - 1086 ResIII PF04851.10 184 9.1e-15 47.3 1.7 1 2 4.8e-16 3.2e-14 45.5 0.1 3 183 295 498 293 499 0.78 # 8832 # 12089 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_15 - 1086 ResIII PF04851.10 184 9.1e-15 47.3 1.7 2 2 0.034 2.3 0.3 0.1 138 161 655 678 587 708 0.71 # 8832 # 12089 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_15 - 1086 UvrD-helicase PF00580.16 315 3.3e-05 15.6 1.3 1 1 1.2e-06 8.3e-05 14.3 0.2 20 271 324 782 308 794 0.68 # 8832 # 12089 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_30 - 234 Methyltransf_15 PF09445.5 164 0.0005 12.0 0.0 1 2 0.023 1.5 0.6 0.0 53 80 4 30 2 38 0.91 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_30 - 234 Methyltransf_15 PF09445.5 164 0.0005 12.0 0.0 2 2 7e-05 0.0047 8.8 0.0 3 30 173 200 171 213 0.90 # 24793 # 25494 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_15 - 1086 SNF2_N PF00176.18 299 0.00016 12.9 0.2 1 1 5.3e-06 0.00036 11.7 0.2 1 159 299 459 299 469 0.71 # 8832 # 12089 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/957623b3-ae3e-4a32-a678-3886212dde71 # Target file: checkm_output/bins/pm470/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm470/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/957623b3-ae3e-4a32-a678-3886212dde71 checkm_output/bins/pm470/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:22 2020 # [ok]