# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 402 MipZ PF09140.6 261 7.7e-07 20.0 0.0 1 2 0.0027 0.11 3.1 0.0 3 50 111 163 109 193 0.73 # 14151 # 15356 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_17 - 402 MipZ PF09140.6 261 7.7e-07 20.0 0.0 2 2 8.7e-07 3.6e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 14151 # 15356 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_25 - 603 DUF87 PF01935.12 229 1.3e-18 59.3 0.0 1 1 5.4e-20 2.2e-18 58.5 0.0 10 170 150 306 142 436 0.83 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 AAA_22 PF13401.1 131 1.1e-06 20.5 0.1 1 2 7.2e-05 0.0029 9.4 0.1 5 26 164 185 161 322 0.88 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 AAA_22 PF13401.1 131 1.1e-06 20.5 0.1 2 2 0.00015 0.0061 8.4 0.0 71 105 442 480 379 511 0.70 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 SMC_N PF02463.14 220 3.4e-05 14.8 0.1 1 1 2.8e-06 0.00011 13.1 0.1 24 56 163 194 155 202 0.85 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 AAA_23 PF13476.1 202 7.2e-05 14.8 3.9 1 1 3.9e-06 0.00016 13.7 3.7 21 124 165 313 143 500 0.67 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_17 - 402 CbiA PF01656.18 195 6.2e-19 59.8 0.0 1 1 2.8e-20 1.2e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 14151 # 15356 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_6 - 129 Ribosomal_S20p PF01649.13 84 0.00011 14.2 0.1 1 1 4.8e-06 0.0002 13.4 0.1 6 59 56 109 53 118 0.75 # 5325 # 5711 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_25 - 603 AAA PF00004.24 132 0.00016 13.5 0.1 1 2 0.034 1.4 0.8 0.0 3 24 168 189 166 218 0.77 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 AAA PF00004.24 132 0.00016 13.5 0.1 2 2 5.4e-05 0.0022 9.9 0.0 52 122 453 524 407 533 0.69 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_17 - 402 AAA_31 PF13614.1 157 3.9e-05 15.3 0.0 1 1 5.5e-06 0.00022 12.8 0.0 108 147 235 273 230 279 0.86 # 14151 # 15356 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_25 - 603 FtsK_SpoIIIE PF01580.13 205 3.2e-06 18.3 0.0 1 2 4.4e-07 1.8e-05 15.9 0.0 38 58 163 183 147 189 0.86 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 FtsK_SpoIIIE PF01580.13 205 3.2e-06 18.3 0.0 2 2 0.049 2 -0.6 0.0 71 146 425 512 422 553 0.67 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 ABC_tran PF00005.22 137 0.00016 13.6 0.1 1 1 1.3e-05 0.00054 11.9 0.1 12 34 164 186 156 192 0.90 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 AAA_10 PF12846.2 304 5.7e-21 66.8 0.8 1 1 3.5e-22 1.4e-20 65.5 0.8 1 289 163 536 163 548 0.72 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 DEAD PF00270.24 169 0.00031 11.9 0.0 1 1 6.1e-05 0.0025 8.9 0.0 20 139 169 490 153 512 0.54 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 DUF853 PF05872.7 504 6.2e-05 13.0 0.0 1 2 0.0013 0.055 3.3 0.0 18 43 160 185 145 190 0.83 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 DUF853 PF05872.7 504 6.2e-05 13.0 0.0 2 2 7.3e-05 0.003 7.5 0.0 259 321 464 534 455 569 0.75 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 TrwB_AAD_bind PF10412.4 386 2e-06 18.2 0.0 1 2 4.9e-06 0.0002 11.6 0.0 15 55 163 214 153 228 0.80 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_25 - 603 TrwB_AAD_bind PF10412.4 386 2e-06 18.2 0.0 2 2 0.00089 0.037 4.2 0.0 257 282 490 515 488 527 0.90 # 20703 # 22511 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0f29d898-dd41-4a0e-ba1d-602228e227d0 # Target file: checkm_output/bins/pm469/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm469/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0f29d898-dd41-4a0e-ba1d-602228e227d0 checkm_output/bins/pm469/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:20 2020 # [ok]