# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_69 - 1096 UPF0020 PF01170.13 180 0.00021 13.9 0.0 1 2 0.0046 0.48 2.9 0.0 28 50 851 873 848 910 0.87 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 UPF0020 PF01170.13 180 0.00021 13.9 0.0 2 2 0.00012 0.013 8.0 0.0 86 116 978 1008 973 1014 0.91 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_77 - 399 MipZ PF09140.6 261 6.5e-09 28.2 0.1 1 2 4.6e-05 0.0049 8.9 0.0 1 51 109 164 109 186 0.77 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 MipZ PF09140.6 261 6.5e-09 28.2 0.1 2 2 1.4e-07 1.5e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_12 - 163 SSB PF00436.20 104 5.4e-43 138.1 0.3 1 1 6.6e-45 6.9e-43 137.8 0.3 1 100 6 109 6 113 0.96 # 9615 # 10103 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 1 4 1.4e-10 1.5e-08 27.0 0.0 5 71 8 78 6 81 0.94 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 2 4 4.3e-10 4.5e-08 25.5 0.0 71 117 419 474 415 485 0.90 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 3 4 6.1e-15 6.4e-13 41.4 0.0 136 308 533 747 528 757 0.54 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 4 4 0.0015 0.16 4.0 0.0 312 334 782 804 771 805 0.88 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_37 - 155 TIGR00855 TIGR00855 125 0.00067 12.8 0.0 1 1 9.5e-06 0.00099 12.2 0.0 83 105 74 96 46 113 0.88 # 38551 # 39015 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 1_19 - 654 N6_N4_Mtase PF01555.13 231 1.9e-58 190.6 1.3 1 1 4e-60 4.2e-58 189.5 1.3 1 224 124 474 124 481 0.98 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_44 - 242 AAA_17 PF13207.1 121 0.011 9.6 4.0 1 2 0.04 4.2 1.2 1.6 53 78 59 89 5 160 0.51 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_44 - 242 AAA_17 PF13207.1 121 0.011 9.6 4.0 2 2 0.00022 0.023 8.5 0.0 2 20 168 189 167 212 0.80 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_16 - 2256 Helicase_C PF00271.26 78 7e-09 28.5 0.0 1 1 1.6e-10 1.7e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_77 - 399 ArsA_ATPase PF02374.10 305 0.00048 12.2 0.0 1 1 1.2e-05 0.0013 10.8 0.0 4 51 111 165 108 255 0.76 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_20 - 971 PhoH PF02562.11 205 0.00055 12.2 0.0 1 1 1.6e-05 0.0016 10.6 0.0 21 71 79 130 61 154 0.83 # 23500 # 26412 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_77 - 399 Methyltransf_24 PF13578.1 106 7.6e-05 16.5 0.0 1 2 0.0042 0.44 4.4 0.0 4 83 119 157 90 165 0.69 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 Methyltransf_24 PF13578.1 106 7.6e-05 16.5 0.0 2 2 2.7e-05 0.0028 11.5 0.0 4 83 119 258 116 272 0.53 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_44 - 242 AAA_23 PF13476.1 202 3.3e-05 17.3 0.5 1 2 3.3e-05 0.0035 10.6 0.0 116 199 32 156 3 160 0.74 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_44 - 242 AAA_23 PF13476.1 202 3.3e-05 17.3 0.5 2 2 0.0014 0.14 5.3 0.3 19 40 163 186 155 191 0.76 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_6 - 640 AAA_13 PF13166.1 712 0.016 6.6 12.5 1 2 1.3e-05 0.0013 10.1 7.4 377 466 198 282 152 283 0.75 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_6 - 640 AAA_13 PF13166.1 712 0.016 6.6 12.5 2 2 0.059 6.2 -2.0 0.2 369 398 564 593 529 634 0.48 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_77 - 399 CbiA PF01656.18 195 1.1e-20 66.8 0.0 1 1 1.8e-22 1.9e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_64 - 455 KaiC PF06745.8 227 1.2e-06 20.7 0.0 1 1 2.9e-08 3.1e-06 19.4 0.0 4 66 185 253 183 277 0.87 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_99 - 279 HI0933_like PF03486.9 409 0.00078 10.9 0.0 1 1 1.1e-05 0.0011 10.4 0.0 60 123 27 89 19 109 0.79 # 90901 # 91737 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_16 - 2256 N6_Mtase PF02384.11 311 6.4e-10 31.5 0.0 1 1 7.4e-11 7.7e-09 27.9 0.0 93 247 145 289 72 295 0.76 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_77 - 399 AAA_31 PF13614.1 157 6.9e-07 22.3 0.0 1 2 0.0011 0.06 6.3 0.0 2 61 110 174 109 221 0.79 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 AAA_31 PF13614.1 157 6.9e-07 22.3 0.0 2 2 6e-06 0.00031 13.7 0.0 108 138 235 265 231 277 0.85 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_64 - 455 AAA_31 PF13614.1 157 6.5e-05 15.9 0.0 1 1 2.9e-06 0.00015 14.7 0.0 5 43 210 249 208 260 0.89 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 AAA_33 PF13671.1 143 0.0002 14.2 0.2 1 3 0.088 9.3 -0.9 0.0 46 79 134 172 102 181 0.69 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 AAA_33 PF13671.1 143 0.0002 14.2 0.2 2 3 3.9e-05 0.0041 10.0 0.0 2 42 209 248 208 327 0.60 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 AAA_33 PF13671.1 143 0.0002 14.2 0.2 3 3 0.036 3.8 0.4 0.1 88 123 350 383 331 394 0.72 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 DnaB_C PF03796.10 259 1.4e-109 357.8 0.3 1 1 2e-111 2.1e-109 357.3 0.3 1 257 188 445 188 447 0.98 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_16 - 2256 Methyltransf_26 PF13659.1 117 1.3e-09 31.2 1.0 1 1 2.4e-10 8.5e-09 28.5 0.0 5 116 116 225 113 226 0.81 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_69 - 1096 Methyltransf_26 PF13659.1 117 1.9e-05 17.7 0.0 1 1 1.3e-06 4.7e-05 16.4 0.0 1 83 852 1011 852 1061 0.69 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_19 - 654 Methyltransf_26 PF13659.1 117 7.4e-05 15.8 0.0 1 2 0.017 0.6 3.2 0.0 66 112 119 203 52 208 0.69 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_19 - 654 Methyltransf_26 PF13659.1 117 7.4e-05 15.8 0.0 2 2 0.00014 0.0049 9.9 0.0 3 76 438 556 436 605 0.61 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_64 - 455 FtsK_SpoIIIE PF01580.13 205 0.00033 13.1 0.2 1 2 8.6e-05 0.0091 8.4 0.0 40 66 208 234 184 242 0.82 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 FtsK_SpoIIIE PF01580.13 205 0.00033 13.1 0.2 2 2 0.012 1.2 1.4 0.1 71 124 319 366 313 400 0.74 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_19 - 654 Cons_hypoth95 PF03602.10 183 2.1e-06 20.2 0.3 1 2 4.4e-06 0.00046 12.6 0.1 95 128 103 137 82 152 0.66 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_19 - 654 Cons_hypoth95 PF03602.10 183 2.1e-06 20.2 0.3 2 2 0.0012 0.13 4.6 0.0 44 61 437 453 429 512 0.78 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_16 - 2256 Eco57I PF07669.6 106 4.1e-05 16.9 0.0 1 1 1.6e-06 0.00017 14.9 0.0 3 101 174 271 172 276 0.87 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_64 - 455 AAA_19 PF13245.1 76 0.00091 12.0 0.0 1 1 2.5e-05 0.0026 10.5 0.0 10 48 206 241 199 264 0.82 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_20 - 971 ResIII PF04851.10 184 2.4e-21 69.3 1.8 1 1 2.3e-23 2.4e-21 69.3 1.8 11 183 65 257 45 258 0.84 # 23500 # 26412 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_92 - 180 DUF3584 PF12128.3 1201 0.016 5.4 32.1 1 1 0.00019 0.02 5.1 32.1 605 752 19 172 13 178 0.74 # 82906 # 83445 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_20 - 971 DEAD PF00270.24 169 3.1e-06 19.8 0.0 1 1 2.2e-07 2.3e-05 16.9 0.0 14 106 76 205 58 263 0.60 # 23500 # 26412 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 640 Kinesin-relat_1 PF12711.2 86 0.0018 11.7 5.3 1 2 0.004 0.42 4.1 0.5 8 42 196 230 191 236 0.81 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_6 - 640 Kinesin-relat_1 PF12711.2 86 0.0018 11.7 5.3 2 2 0.00015 0.016 8.6 0.4 7 37 251 281 246 284 0.91 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_69 - 1096 MethyltransfD12 PF02086.10 260 3.2e-56 183.6 0.0 1 1 9.6e-58 5e-56 182.9 0.0 1 245 834 1063 834 1076 0.94 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_19 - 654 MethyltransfD12 PF02086.10 260 7.8e-06 18.4 0.5 1 2 8.5e-06 0.00044 12.7 0.1 155 202 98 145 11 164 0.70 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_19 - 654 MethyltransfD12 PF02086.10 260 7.8e-06 18.4 0.5 2 2 0.016 0.85 1.9 0.0 195 229 615 649 607 652 0.86 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_11 - 226 EFP PF01132.15 55 0.0005 12.8 0.0 1 1 1e-05 0.0011 11.7 0.0 23 53 133 163 133 164 0.90 # 8740 # 9417 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_12 - 163 tRNA_anti-codon PF01336.20 75 0.00066 12.6 0.0 1 1 9.8e-06 0.001 11.9 0.0 31 61 58 92 52 112 0.82 # 9615 # 10103 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_64 - 455 AAA_25 PF13481.1 194 8.4e-15 47.6 0.1 1 1 1.5e-16 1.6e-14 46.7 0.1 14 190 188 368 174 372 0.82 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_16 - 2256 SNF2_N PF00176.18 299 7.9e-18 57.2 0.0 1 1 1.8e-19 1.9e-17 55.9 0.0 27 293 849 1262 835 1268 0.85 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_14 - 340 AAA_5 PF07728.9 139 0.00058 12.6 0.1 1 1 1.4e-05 0.0014 11.3 0.1 12 91 175 266 173 291 0.93 # 11122 # 12141 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_44 - 242 APS_kinase PF01583.15 157 0.00011 14.8 0.0 1 1 3.2e-06 0.00034 13.3 0.0 4 43 167 206 164 226 0.91 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/74a7ff82-cf99-48f8-8aec-f89894c3cdac # Target file: checkm_output/bins/pm467/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm467/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/74a7ff82-cf99-48f8-8aec-f89894c3cdac checkm_output/bins/pm467/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:19 2020 # [ok]