# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_49 - 220 cobW PF02492.14 178 0.00012 13.8 0.0 1 1 1.3e-05 0.00041 12.1 0.0 53 102 24 99 4 171 0.74 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_1 - 220 cobW PF02492.14 178 0.00029 12.6 0.0 1 1 5e-05 0.0016 10.2 0.0 54 101 25 97 4 114 0.70 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_49 - 220 IstB_IS21 PF01695.12 178 0.00071 11.3 0.0 1 1 1.7e-05 0.0011 10.7 0.0 52 84 7 40 2 60 0.85 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_1 - 220 MipZ PF09140.6 261 5.8e-13 40.7 0.1 1 1 6.8e-12 2.1e-10 32.3 0.1 2 140 4 123 3 189 0.78 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_49 - 220 MipZ PF09140.6 261 6.4e-13 40.6 0.1 1 1 1e-11 3.3e-10 31.7 0.1 2 129 4 111 3 187 0.84 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_49 - 220 YhjQ PF06564.7 244 0.00015 13.4 0.0 1 2 0.0036 0.11 4.0 0.1 3 26 4 27 2 39 0.82 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_49 - 220 YhjQ PF06564.7 244 0.00015 13.4 0.0 2 2 0.00034 0.011 7.3 0.0 108 154 73 117 50 127 0.82 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_1 - 220 YhjQ PF06564.7 244 0.00045 11.8 0.0 1 2 0.0016 0.051 5.1 0.0 3 31 4 32 2 41 0.85 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_1 - 220 YhjQ PF06564.7 244 0.00045 11.8 0.0 2 2 0.0022 0.07 4.7 0.0 106 151 71 114 52 125 0.81 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_29 - 916 AAA_22 PF13401.1 131 3.7e-05 16.1 0.0 1 2 1.6e-05 0.00099 11.5 0.0 8 37 538 578 535 699 0.66 # 15250 # 17997 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_29 - 916 AAA_22 PF13401.1 131 3.7e-05 16.1 0.0 2 2 0.018 1.2 1.6 0.0 75 109 740 778 737 794 0.72 # 15250 # 17997 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_1 - 220 SRP54 PF00448.17 196 0.00024 12.8 0.1 1 1 9.1e-06 0.00057 11.6 0.1 3 94 4 91 2 95 0.79 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_49 - 220 MobB PF03205.9 140 0.0002 13.4 0.3 1 1 9e-06 0.00028 12.8 0.3 1 44 3 45 3 86 0.91 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_1 - 220 MobB PF03205.9 140 0.00044 12.2 0.5 1 1 2.5e-05 0.00079 11.4 0.5 1 44 3 45 3 51 0.88 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_1 - 220 ArsA_ATPase PF02374.10 305 3.4e-07 21.8 0.8 1 1 1.4e-08 4.4e-07 21.4 0.5 2 49 3 51 2 70 0.88 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_49 - 220 ArsA_ATPase PF02374.10 305 5e-07 21.2 0.3 1 1 2.7e-08 8.4e-07 20.5 0.1 2 52 3 54 2 66 0.88 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_1 - 220 VirC1 PF07015.6 231 5.4e-09 27.7 0.0 1 1 3e-10 9.4e-09 26.9 0.0 2 96 3 93 2 108 0.83 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_49 - 220 VirC1 PF07015.6 231 2.1e-08 25.7 0.0 1 1 1.2e-09 3.7e-08 24.9 0.0 2 96 3 93 2 111 0.77 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_49 - 220 CbiA PF01656.18 195 3.3e-20 64.5 0.0 1 1 1.4e-21 4.4e-20 64.1 0.0 1 184 5 172 5 186 0.81 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_1 - 220 CbiA PF01656.18 195 4.3e-19 60.9 0.0 1 1 1.8e-20 5.7e-19 60.5 0.0 1 184 5 172 5 186 0.80 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_32 - 471 TraG-D_C PF12696.2 128 3e-25 80.8 0.0 1 1 7.8e-27 4.9e-25 80.1 0.0 2 127 272 391 271 392 0.91 # 19454 # 20866 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.403 1_49 - 220 AAA_31 PF13614.1 157 8.6e-08 24.5 0.0 1 2 3.7e-05 0.0012 11.1 0.0 1 61 3 63 3 70 0.86 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_49 - 220 AAA_31 PF13614.1 157 8.6e-08 24.5 0.0 2 2 2.8e-05 0.00088 11.5 0.0 112 151 75 113 67 115 0.87 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_1 - 220 AAA_31 PF13614.1 157 4.4e-07 22.2 0.0 1 2 5.5e-05 0.0017 10.5 0.0 1 59 3 61 3 68 0.84 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_1 - 220 AAA_31 PF13614.1 157 4.4e-07 22.2 0.0 2 2 0.00011 0.0034 9.6 0.0 110 146 73 108 67 114 0.79 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_29 - 916 FtsK_SpoIIIE PF01580.13 205 8.3e-06 17.6 0.0 1 1 2.4e-07 1.5e-05 16.8 0.0 36 70 532 566 521 568 0.89 # 15250 # 17997 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 2_5 - 74 Ribosomal_S6 PF01250.12 92 0.00018 13.6 0.0 1 1 4.2e-06 0.00026 13.1 0.0 1 30 41 70 41 73 0.94 # 1777 # 1998 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_29 - 916 AAA_10 PF12846.2 304 1.5e-32 105.5 0.0 1 1 3.8e-34 2.4e-32 104.7 0.0 3 303 536 834 535 835 0.88 # 15250 # 17997 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_32 - 471 TrwB_AAD_bind PF10412.4 386 9e-18 56.2 0.0 1 1 2.4e-19 1.5e-17 55.5 0.0 165 380 187 405 169 407 0.81 # 19454 # 20866 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.403 1_32 - 471 T4SS-DNA_transf PF02534.9 469 3.4e-95 311.5 0.0 1 1 6.6e-97 4.2e-95 311.2 0.0 50 452 2 418 1 440 0.89 # 19454 # 20866 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.403 1_49 - 220 ArgK PF03308.11 267 0.00055 11.0 0.0 1 2 0.00035 0.022 5.7 0.2 31 66 4 40 2 46 0.80 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_49 - 220 ArgK PF03308.11 267 0.00055 11.0 0.0 2 2 0.0022 0.14 3.1 0.0 119 168 78 128 71 172 0.85 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_29 - 916 NACHT PF05729.7 166 0.00029 12.8 0.0 1 1 1.1e-05 0.00072 11.5 0.0 5 29 539 563 537 568 0.85 # 15250 # 17997 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_24 - 89 Ub-RnfH PF03658.9 84 0.00038 12.6 0.1 1 2 0.0001 0.0066 8.6 0.0 26 47 3 24 1 33 0.87 # 13328 # 13594 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_24 - 89 Ub-RnfH PF03658.9 84 0.00038 12.6 0.1 2 2 0.0066 0.41 2.9 0.0 22 50 34 64 23 67 0.71 # 13328 # 13594 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_1 - 220 AAA_25 PF13481.1 194 6.2e-05 14.7 0.0 1 1 2.6e-06 8.2e-05 14.3 0.0 34 62 3 33 1 94 0.82 # 405 # 1064 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_49 - 220 AAA_25 PF13481.1 194 0.0002 13.0 0.0 1 1 9.9e-06 0.00031 12.4 0.0 34 62 3 33 1 61 0.77 # 31773 # 32432 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/65ba6ed9-5674-4896-aeee-8fb33692064d # Target file: checkm_output/bins/pm466/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm466/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/65ba6ed9-5674-4896-aeee-8fb33692064d checkm_output/bins/pm466/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:17 2020 # [ok]