# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_33 - 328 Mg_chelatase PF01078.16 207 3.5e-05 14.7 0.0 1 1 1.6e-06 7.2e-05 13.7 0.0 10 54 146 190 140 209 0.86 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 cobW PF02492.14 178 0.00017 12.8 0.1 1 1 8.8e-06 0.00039 11.6 0.1 4 44 162 204 160 234 0.84 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 IstB_IS21 PF01695.12 178 7.9e-06 17.1 0.0 1 1 3.1e-07 1.4e-05 16.4 0.0 44 68 155 179 127 222 0.80 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_24 - 252 MipZ PF09140.6 261 0.00028 11.7 0.0 1 1 9.5e-06 0.00042 11.2 0.0 8 49 22 63 16 115 0.81 # 20811 # 21566 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_36 - 836 DUF87 PF01935.12 229 3.7e-05 15.3 0.0 1 1 4e-06 8.8e-05 14.1 0.0 25 44 458 477 440 488 0.86 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 DUF87 PF01935.12 229 6.3e-05 14.6 0.0 1 1 4.6e-06 0.0001 13.9 0.0 24 79 159 210 152 237 0.79 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 AAA_22 PF13401.1 131 3.8e-07 22.1 0.0 1 1 4e-08 1.8e-06 19.9 0.0 5 56 457 509 454 578 0.83 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_24 - 252 AAA_17 PF13207.1 121 3.7e-05 16.3 0.0 1 1 3e-06 6.7e-05 15.5 0.0 6 78 22 109 18 142 0.65 # 20811 # 21566 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_36 - 836 AAA_17 PF13207.1 121 0.00031 13.3 1.1 1 1 9.5e-05 0.0021 10.7 0.2 3 22 460 479 459 580 0.78 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_36 - 836 AAA_21 PF13304.1 303 6.8e-06 17.9 0.0 1 2 9.9e-06 0.00043 12.0 0.0 2 25 459 485 458 524 0.80 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_36 - 836 AAA_21 PF13304.1 303 6.8e-06 17.9 0.0 2 2 0.0042 0.19 3.3 0.0 271 299 677 705 676 706 0.95 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 MobB PF03205.9 140 3.1e-05 15.5 0.1 1 1 1.7e-06 7.5e-05 14.2 0.1 3 26 161 184 159 220 0.88 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_24 - 252 ArsA_ATPase PF02374.10 305 1.9e-05 15.5 0.0 1 1 7.1e-07 3.1e-05 14.8 0.0 4 42 18 56 15 102 0.82 # 20811 # 21566 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_33 - 328 PhoH PF02562.11 205 2.1e-05 15.5 0.2 1 1 8.7e-07 3.8e-05 14.7 0.2 5 56 143 195 141 210 0.80 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 T2SE PF00437.15 272 1.2e-85 278.4 0.3 1 1 6.4e-87 1.4e-85 278.1 0.3 4 270 35 301 32 303 0.98 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 T2SE PF00437.15 272 0.00025 11.7 0.0 1 1 2e-05 0.00044 10.9 0.0 121 154 449 482 434 487 0.80 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 Zeta_toxin PF06414.7 201 2.3e-06 18.5 0.0 1 1 1.9e-07 4.3e-06 17.7 0.0 12 71 154 218 144 238 0.74 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_24 - 252 Zeta_toxin PF06414.7 201 5.9e-06 17.2 0.0 1 1 5e-07 1.1e-05 16.3 0.0 12 106 11 105 3 139 0.78 # 20811 # 21566 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_33 - 328 AAA_16 PF13191.1 185 4.3e-06 18.5 0.1 1 1 4.7e-07 1e-05 17.3 0.0 22 52 156 189 144 295 0.78 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 AAA_16 PF13191.1 185 8.7e-05 14.3 0.0 1 1 1.4e-05 0.00031 12.5 0.0 23 51 455 483 447 603 0.81 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_36 - 836 AAA_23 PF13476.1 202 3.5e-06 19.2 0.0 1 1 1.7e-07 7.3e-06 18.1 0.0 20 38 457 475 446 495 0.86 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_24 - 252 CbiA PF01656.18 195 2e-10 32.1 0.1 1 1 5.8e-12 2.6e-10 31.8 0.1 4 103 20 102 18 201 0.81 # 20811 # 21566 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_33 - 328 KaiC PF06745.8 227 0.00016 12.5 0.0 1 1 7.7e-06 0.00034 11.5 0.0 15 36 154 175 130 194 0.85 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 AAA_29 PF13555.1 62 8.8e-07 20.2 0.0 1 1 9e-08 2e-06 19.1 0.0 23 45 457 478 448 488 0.84 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 AAA_29 PF13555.1 62 5.3e-05 14.5 0.0 1 1 4.7e-06 0.0001 13.6 0.0 22 43 157 178 147 188 0.82 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 Bac_DnaA PF00308.13 219 8.1e-05 14.1 0.0 1 1 2.6e-06 0.00011 13.6 0.0 3 71 130 195 128 237 0.86 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 Sigma54_activat PF00158.21 168 6.3e-06 17.5 0.0 1 1 2.6e-07 1.1e-05 16.6 0.0 8 46 144 182 138 221 0.80 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 DUF258 PF03193.11 161 1.5e-05 16.0 0.0 1 1 1.1e-06 2.3e-05 15.3 0.0 20 57 142 180 125 215 0.84 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 DUF258 PF03193.11 161 0.00011 13.2 0.0 1 1 9.6e-06 0.00021 12.2 0.0 27 58 447 479 428 505 0.78 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_20 - 653 TraG-D_C PF12696.2 128 1.8e-38 123.1 0.0 1 1 6.4e-40 2.8e-38 122.4 0.0 1 127 451 572 451 573 0.89 # 14997 # 16955 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_33 - 328 AAA_30 PF13604.1 196 2.3e-07 22.3 0.2 1 1 1.1e-08 5e-07 21.2 0.1 3 51 144 193 142 210 0.80 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 FtsK_SpoIIIE PF01580.13 205 1.7e-08 25.9 0.1 1 1 1.8e-09 4e-08 24.7 0.0 14 85 128 204 124 229 0.82 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 FtsK_SpoIIIE PF01580.13 205 5.8e-05 14.4 0.1 1 1 4.8e-06 0.00011 13.5 0.1 38 58 456 476 436 482 0.83 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_36 - 836 ABC_tran PF00005.22 137 2e-06 19.9 0.0 1 1 3.2e-07 7.1e-06 18.1 0.0 5 37 450 482 447 623 0.83 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 ABC_tran PF00005.22 137 0.00019 13.5 0.0 1 1 1.4e-05 0.0003 12.8 0.0 4 34 151 181 148 230 0.85 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 AAA_19 PF13245.1 76 1.7e-10 32.4 0.7 1 1 1.3e-11 5.8e-10 30.6 0.4 1 52 149 198 149 214 0.87 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 AAA_10 PF12846.2 304 1.3e-35 115.0 0.0 1 1 1.8e-36 2.6e-35 114.0 0.0 2 292 457 734 457 740 0.86 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_20 - 653 AAA_10 PF12846.2 304 2.3e-10 32.1 0.0 1 1 2.3e-11 3.3e-10 31.5 0.0 4 302 160 530 157 532 0.76 # 14997 # 16955 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_33 - 328 AAA_10 PF12846.2 304 4.1e-06 18.1 0.0 1 1 4.1e-07 6.1e-06 17.5 0.0 2 39 159 198 158 220 0.85 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 ResIII PF04851.10 184 4.2e-06 18.4 0.0 1 1 1.5e-07 6.8e-06 17.8 0.0 6 62 145 200 140 207 0.84 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 DEAD PF00270.24 169 8.8e-07 20.3 0.1 1 1 3.4e-08 1.5e-06 19.6 0.1 1 58 144 202 144 228 0.85 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_20 - 653 TrwB_AAD_bind PF10412.4 386 2.5e-27 87.1 0.0 1 2 0.021 0.3 1.3 0.0 76 125 223 278 157 294 0.72 # 14997 # 16955 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 653 TrwB_AAD_bind PF10412.4 386 2.5e-27 87.1 0.0 2 2 2.1e-27 3.1e-26 83.5 0.0 164 366 360 572 347 583 0.89 # 14997 # 16955 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_33 - 328 TrwB_AAD_bind PF10412.4 386 9.1e-08 22.7 0.1 1 1 1e-08 1.5e-07 22.1 0.1 14 55 157 200 150 214 0.92 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 TrwB_AAD_bind PF10412.4 386 0.00014 12.2 0.1 1 1 4.1e-05 0.0006 10.2 0.0 15 42 456 483 451 489 0.87 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 AAA_11 PF13086.1 236 1.7e-05 16.2 0.0 1 1 5.9e-07 2.6e-05 15.6 0.0 4 44 145 215 142 252 0.64 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 Sigma54_activ_2 PF14532.1 138 0.00012 13.9 0.0 1 1 4.8e-06 0.00021 13.1 0.0 8 58 145 198 139 218 0.75 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_20 - 653 T4SS-DNA_transf PF02534.9 469 9.3e-111 362.3 0.0 1 1 4.5e-112 2e-110 361.2 0.0 3 456 115 616 113 628 0.90 # 14997 # 16955 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_33 - 328 GTP_EFTU PF00009.22 188 0.00017 12.8 0.0 1 1 6.6e-06 0.00029 12.0 0.0 2 28 157 183 156 214 0.89 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 RNA_helicase PF00910.17 107 0.00029 12.8 0.0 1 1 1.2e-05 0.00053 11.9 0.0 1 26 161 186 161 206 0.84 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 UPF0079 PF02367.12 123 0.00097 10.6 1.3 1 1 4.1e-05 0.0018 9.7 0.3 13 41 156 184 144 228 0.82 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 AAA_24 PF13479.1 213 0.00047 11.5 0.1 1 1 2.9e-05 0.0013 10.1 0.1 6 24 459 477 458 480 0.89 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 UvrD-helicase PF00580.16 315 2.6e-05 15.3 0.1 1 1 8.7e-07 3.8e-05 14.8 0.1 4 51 146 194 143 199 0.80 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_33 - 328 NACHT PF05729.7 166 8.9e-06 17.2 0.0 1 1 5e-07 2.2e-05 15.9 0.0 2 39 160 194 159 221 0.81 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 836 AAA_25 PF13481.1 194 0.00017 12.7 0.0 1 1 9e-06 0.0004 11.6 0.0 34 55 457 478 433 508 0.80 # 28508 # 31015 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.607 1_33 - 328 AAA_28 PF13521.1 163 0.00019 13.1 0.1 1 1 8.8e-06 0.00039 12.2 0.1 2 18 161 177 160 201 0.85 # 26694 # 27677 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/112afcb8-8bcf-4bf8-9492-4003ef03106c # Target file: checkm_output/bins/pm461/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm461/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/112afcb8-8bcf-4bf8-9492-4003ef03106c checkm_output/bins/pm461/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:16 2020 # [ok]