# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 1981 UvrD_C_2 PF13538.1 104 1.9e-06 19.8 0.1 1 1 1.1e-07 5.1e-06 18.5 0.1 2 101 1374 1478 1373 1481 0.78 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_14 - 883 DUF87 PF01935.12 229 4.4e-06 18.5 0.0 1 1 7.9e-07 1.9e-05 16.4 0.0 26 214 492 671 486 685 0.62 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_26 - 789 DUF87 PF01935.12 229 2.4e-05 16.0 0.0 1 1 2.2e-06 5.1e-05 15.0 0.0 26 67 195 235 184 270 0.90 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_14 - 883 AAA_22 PF13401.1 131 0.00024 13.1 0.0 1 2 5.5e-05 0.0026 9.8 0.0 7 27 492 512 488 523 0.91 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_14 - 883 AAA_22 PF13401.1 131 0.00024 13.1 0.0 2 2 0.073 3.4 -0.3 0.0 78 99 691 711 664 742 0.67 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_27 - 1981 SRP54 PF00448.17 196 0.00019 12.7 0.6 1 2 0.00015 0.0071 7.6 0.0 66 99 576 609 561 629 0.80 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_27 - 1981 SRP54 PF00448.17 196 0.00019 12.7 0.6 2 2 0.0047 0.22 2.7 0.2 6 25 1050 1069 1046 1073 0.84 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_26 - 789 AAA_17 PF13207.1 121 3.1e-05 16.7 0.0 1 1 3.2e-06 7.5e-05 15.4 0.0 3 36 196 234 194 306 0.73 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_14 - 883 AAA_17 PF13207.1 121 0.00015 14.4 0.0 1 1 2.2e-05 0.00053 12.7 0.0 2 33 492 529 491 639 0.65 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_26 - 789 MobB PF03205.9 140 0.00011 13.7 0.0 1 1 5e-06 0.00024 12.7 0.0 4 33 196 225 194 228 0.90 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_40 - 323 CTP_synth_N PF06418.9 276 0.00012 13.1 0.0 1 1 3.5e-06 0.00017 12.6 0.0 77 151 111 184 95 210 0.79 # 39360 # 40328 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_26 - 789 T2SE PF00437.15 272 5.6e-05 13.9 0.0 1 1 2.6e-06 0.00012 12.8 0.0 123 161 189 225 165 229 0.88 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 789 AAA_16 PF13191.1 185 8e-09 27.5 0.0 1 1 9e-10 2.1e-08 26.2 0.0 16 56 184 224 183 249 0.82 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_14 - 883 AAA_16 PF13191.1 185 7.3e-06 17.9 0.0 1 1 8.2e-07 1.9e-05 16.5 0.0 11 55 476 521 472 531 0.87 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_26 - 789 AAA_18 PF13238.1 129 3.4e-05 16.0 0.0 1 1 3.1e-06 0.00014 14.0 0.0 2 37 196 234 196 278 0.67 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 789 AAA_29 PF13555.1 62 0.00012 13.5 0.0 1 1 9.3e-06 0.00044 11.7 0.0 24 40 193 209 183 212 0.83 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 789 Sigma54_activat PF00158.21 168 0.00049 11.4 0.0 1 1 3.1e-05 0.0015 9.9 0.0 23 58 193 228 169 236 0.85 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 789 TraG-D_C PF12696.2 128 5.7e-24 76.3 0.1 1 1 5.7e-25 2.7e-23 74.1 0.0 1 127 422 544 422 545 0.89 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_27 - 1981 AAA_30 PF13604.1 196 1.2e-44 144.1 3.1 1 2 1.5e-05 0.00036 12.0 0.1 46 127 527 599 508 609 0.72 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_27 - 1981 AAA_30 PF13604.1 196 1.2e-44 144.1 3.1 2 2 3.4e-42 8.1e-41 131.6 0.4 2 187 1029 1216 1028 1220 0.96 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_26 - 789 AAA_30 PF13604.1 196 0.00018 13.0 0.0 1 1 6e-05 0.0014 10.0 0.0 21 56 195 230 185 235 0.86 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 789 FtsK_SpoIIIE PF01580.13 205 6.6e-05 14.3 0.0 1 1 3.1e-06 0.00014 13.2 0.0 34 59 185 213 152 235 0.82 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_27 - 1981 AAA_19 PF13245.1 76 0.00057 11.5 4.3 1 2 0.012 0.57 1.9 0.0 30 63 515 555 509 567 0.66 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_27 - 1981 AAA_19 PF13245.1 76 0.00057 11.5 4.3 2 2 0.00017 0.0079 7.9 0.2 15 60 1050 1093 1041 1105 0.80 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_14 - 883 AAA_10 PF12846.2 304 4.5e-42 136.3 0.0 1 1 3.3e-43 7.7e-42 135.5 0.0 1 291 489 778 489 785 0.83 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_26 - 789 AAA_10 PF12846.2 304 3.5e-17 54.6 0.7 1 1 3.4e-17 8.1e-16 50.1 0.7 3 301 194 502 193 505 0.66 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_27 - 1981 Viral_helicase1 PF01443.13 234 0.00034 12.0 0.0 1 1 1.7e-05 0.0008 10.8 0.0 2 112 1049 1173 1048 1230 0.67 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_26 - 789 DUF815 PF05673.8 250 3.9e-05 14.5 0.0 1 1 1.5e-06 7.2e-05 13.6 0.0 45 85 184 224 147 228 0.81 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 789 TrwB_AAD_bind PF10412.4 386 2.8e-136 445.9 0.0 1 1 1.5e-137 3.5e-136 445.6 0.0 2 385 179 563 178 564 0.98 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_14 - 883 TrwB_AAD_bind PF10412.4 386 9.5e-08 22.8 0.0 1 1 1.1e-08 2.5e-07 21.4 0.0 13 88 487 561 479 618 0.79 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_26 - 789 T4SS-DNA_transf PF02534.9 469 3.3e-15 47.3 0.0 1 1 2.3e-16 1.1e-14 45.6 0.0 250 388 369 505 165 561 0.81 # 22912 # 25278 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_14 - 883 ArgK PF03308.11 267 0.00021 11.9 0.0 1 1 7.8e-06 0.00037 11.1 0.0 31 87 491 552 472 567 0.78 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_27 - 1981 PIF1 PF05970.9 364 5e-05 14.2 0.1 1 1 2e-06 9.2e-05 13.3 0.1 5 157 1032 1165 1028 1173 0.77 # 25275 # 31217 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.604 1_22 - 457 Gtr1_RagA PF04670.7 232 0.00036 11.5 2.3 1 3 2.9e-05 0.0014 9.6 0.0 150 197 99 146 65 157 0.89 # 17168 # 18538 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 1_22 - 457 Gtr1_RagA PF04670.7 232 0.00036 11.5 2.3 2 3 0.048 2.3 -0.9 0.0 41 82 212 249 203 273 0.78 # 17168 # 18538 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 1_22 - 457 Gtr1_RagA PF04670.7 232 0.00036 11.5 2.3 3 3 0.032 1.5 -0.3 0.2 173 213 399 439 396 450 0.78 # 17168 # 18538 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 1_14 - 883 AAA_25 PF13481.1 194 0.00011 13.5 0.0 1 2 0.00034 0.016 6.4 0.0 37 60 493 517 488 547 0.76 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_14 - 883 AAA_25 PF13481.1 194 0.00011 13.5 0.0 2 2 0.0014 0.067 4.4 0.0 144 186 701 740 656 743 0.84 # 8630 # 11278 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/106e2916-917d-4e25-96d3-03124a743ec8 # Target file: checkm_output/bins/pm46/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm46/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/106e2916-917d-4e25-96d3-03124a743ec8 checkm_output/bins/pm46/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:15 2020 # [ok]