# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 301 3HCDH_N PF02737.13 180 3e-08 23.3 0.8 1 1 1.2e-08 1.3e-07 21.2 0.8 1 40 6 45 6 116 0.92 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_6 - 363 AAA_15 PF13175.1 415 2.6e-12 36.2 0.0 1 2 4e-08 4.4e-07 18.9 0.1 1 44 2 43 2 68 0.87 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 363 AAA_15 PF13175.1 415 2.6e-12 36.2 0.0 2 2 4.9e-07 5.4e-06 15.3 0.0 372 414 296 336 274 337 0.93 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 363 AAA_21 PF13304.1 303 1.4e-27 87.1 0.1 1 1 1e-27 1.1e-26 84.1 0.1 1 301 23 336 23 338 0.86 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_2 - 301 F420_oxidored PF03807.12 96 3.5e-07 20.5 0.6 1 1 1e-07 1.1e-06 18.9 0.2 2 78 7 79 6 98 0.82 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_6 - 363 SMC_N PF02463.14 220 1.1e-16 50.4 0.0 1 2 7.4e-13 8.2e-12 34.5 0.1 1 51 1 47 1 61 0.88 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 363 SMC_N PF02463.14 220 1.1e-16 50.4 0.0 2 2 1.2e-06 1.3e-05 14.2 0.0 136 203 273 338 107 345 0.78 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 363 AAA_23 PF13476.1 202 3.1e-13 40.2 0.0 1 1 3.6e-14 3.9e-13 39.9 0.0 2 53 5 55 4 167 0.89 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 363 AAA_13 PF13166.1 712 6.3e-05 11.3 0.0 1 1 8e-06 8.8e-05 10.8 0.0 14 36 19 41 7 54 0.79 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 363 AAA_29 PF13555.1 62 4.5e-05 12.8 0.0 1 1 7.6e-06 8.3e-05 12.0 0.0 17 47 16 45 2 53 0.70 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_2 - 301 NAD_binding_11 PF14833.1 122 5.2e-39 122.9 0.3 1 2 0.029 0.32 0.9 1.1 8 53 96 141 92 153 0.85 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_2 - 301 NAD_binding_11 PF14833.1 122 5.2e-39 122.9 0.3 2 2 4.7e-40 5.2e-39 122.9 0.3 1 121 170 289 170 290 0.98 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_2 - 301 NAD_binding_2 PF03446.10 163 6e-42 133.0 3.6 1 1 8e-43 8.8e-42 132.5 3.6 2 162 5 166 4 167 0.96 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_2 - 301 2-Hacid_dh_C PF02826.14 178 1.5e-07 20.5 0.1 1 1 2.5e-08 2.7e-07 19.6 0.1 36 146 4 118 2 124 0.85 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_6 - 363 DUF2813 PF11398.3 373 6.5e-06 15.1 0.2 1 1 1.2e-06 1.3e-05 14.2 0.0 4 48 3 47 1 58 0.89 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 363 ABC_tran PF00005.22 137 2.7e-08 24.0 0.0 1 1 5.1e-08 5.6e-07 19.8 0.0 8 43 18 97 13 304 0.56 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_2 - 301 UDPG_MGDP_dh_N PF03721.9 185 7.9e-07 18.4 0.1 1 2 2e-06 2.2e-05 13.7 0.1 2 39 6 43 5 49 0.93 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_2 - 301 UDPG_MGDP_dh_N PF03721.9 185 7.9e-07 18.4 0.1 2 2 0.0061 0.067 2.3 0.0 107 139 86 117 82 126 0.77 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_2 - 301 TrkA_N PF02254.13 116 2.9e-06 17.1 0.0 1 1 6.4e-07 7e-06 15.9 0.0 1 43 7 49 7 79 0.85 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_2 - 301 AlaDh_PNT_C PF01262.16 168 1.9e-05 14.1 1.6 1 2 5.6e-06 6.1e-05 12.4 0.1 21 65 5 49 2 62 0.89 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_2 - 301 AlaDh_PNT_C PF01262.16 168 1.9e-05 14.1 1.6 2 2 0.028 0.31 0.4 0.2 13 42 84 113 72 117 0.84 # 1287 # 2189 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.640 1_6 - 363 AAA_25 PF13481.1 194 7e-05 12.1 0.0 1 1 1.3e-05 0.00014 11.1 0.0 31 95 19 86 8 121 0.76 # 4737 # 5825 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/12c22077-7c1f-4fc5-be94-a42b12e05aa1 # Target file: checkm_output/bins/pm456/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm456/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/12c22077-7c1f-4fc5-be94-a42b12e05aa1 checkm_output/bins/pm456/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:12 2020 # [ok]