# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_53 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 1 2 0.00026 0.027 7.0 0.0 103 123 17 37 4 88 0.71 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 2 2 6.3e-05 0.0065 9.0 0.0 28 54 163 189 158 220 0.67 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_45 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 1 2 0.0008 0.083 4.8 0.5 7 25 8 26 2 38 0.71 # 37676 # 38320 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_45 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 2 2 9e-09 9.3e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 37676 # 38320 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_61 - 176 SSB PF00436.20 104 6.7e-41 131.4 0.4 1 1 8.6e-43 8.8e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 48618 # 49145 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.585 1_4 - 383 DUF87 PF01935.12 229 0.00063 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 28 56 162 191 161 192 0.88 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_4 - 383 AAA_22 PF13401.1 131 1e-05 18.6 0.0 1 1 4.9e-07 2.5e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 AAA_22 PF13401.1 131 0.00029 14.0 0.0 1 1 1.3e-05 0.00067 12.8 0.0 6 28 227 249 222 330 0.78 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 ATP_bind_1 PF03029.12 238 4.8e-05 15.9 0.0 1 1 7.2e-07 7.4e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_53 - 228 Methyltransf_11 PF08241.7 95 0.00064 13.2 0.0 1 2 0.0024 0.25 4.9 0.0 78 93 53 68 48 70 0.84 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 228 Methyltransf_11 PF08241.7 95 0.00064 13.2 0.0 2 2 0.0014 0.14 5.7 0.0 5 54 172 220 168 226 0.82 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 228 N6_N4_Mtase PF01555.13 231 4.6e-37 120.6 0.0 1 1 1.8e-36 1.8e-34 112.1 0.0 1 228 21 200 21 203 0.91 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 383 AAA_17 PF13207.1 121 1.9e-05 18.4 0.1 1 2 4.7e-06 0.00024 14.9 0.0 3 47 161 208 161 251 0.76 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_4 - 383 AAA_17 PF13207.1 121 1.9e-05 18.4 0.1 2 2 0.086 4.4 1.1 0.1 24 113 332 363 274 374 0.60 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 AAA_17 PF13207.1 121 3.1e-05 17.8 0.1 1 1 2.2e-06 0.00012 15.9 0.0 1 23 227 249 227 342 0.74 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 1 2 0.017 1.7 1.3 0.0 14 60 61 108 61 127 0.88 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_4 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 2 2 3.1e-06 0.00032 13.4 0.0 5 26 162 183 160 193 0.90 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 T2SE PF00437.15 272 1.5e-41 135.0 0.0 1 1 5.4e-43 2.8e-41 134.1 0.0 10 271 97 373 90 374 0.85 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 T2SE PF00437.15 272 8.3e-36 116.2 0.0 1 1 2.4e-37 1.2e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 G-alpha PF00503.15 389 0.0007 11.2 0.0 1 2 0.069 7.1 -2.0 0.0 234 272 70 113 51 117 0.81 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_17 - 518 G-alpha PF00503.15 389 0.0007 11.2 0.0 2 2 1.9e-05 0.002 9.7 0.0 58 87 225 254 214 312 0.83 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_45 - 215 VirC1 PF07015.6 231 0.00042 12.4 0.0 1 2 0.00073 0.075 5.0 0.0 3 29 3 29 1 36 0.81 # 37676 # 38320 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_45 - 215 VirC1 PF07015.6 231 0.00042 12.4 0.0 2 2 0.00052 0.053 5.5 0.0 87 190 77 181 59 194 0.70 # 37676 # 38320 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_17 - 518 AAA_16 PF13191.1 185 7.6e-05 15.7 0.0 1 1 4.6e-06 0.00024 14.1 0.0 8 52 213 254 212 330 0.81 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 AAA_16 PF13191.1 185 0.0003 13.7 0.0 1 1 1.2e-05 0.00063 12.7 0.0 27 52 160 188 148 282 0.82 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 AAA_23 PF13476.1 202 0.00016 15.0 0.1 1 1 1.1e-05 0.00056 13.2 0.0 20 38 226 244 209 249 0.86 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 AAA_23 PF13476.1 202 0.00023 14.5 0.0 1 1 7.3e-06 0.00038 13.8 0.0 19 40 157 178 142 209 0.83 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_4 - 383 AAA_18 PF13238.1 129 1.6e-05 18.2 0.0 1 1 6e-07 3.1e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 AAA_18 PF13238.1 129 0.00038 13.8 0.0 1 1 2.2e-05 0.0011 12.2 0.0 1 18 228 245 228 312 0.86 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_45 - 215 CbiA PF01656.18 195 1.3e-09 30.7 0.1 1 1 1.8e-11 1.8e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 37676 # 38320 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_17 - 518 AAA_29 PF13555.1 62 2.7e-05 16.6 0.0 1 1 1.1e-06 5.5e-05 15.6 0.0 21 40 224 242 216 254 0.83 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 AAA_29 PF13555.1 62 4e-05 16.1 0.0 1 1 2.3e-06 0.00012 14.6 0.0 26 44 160 178 151 186 0.83 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 AAA PF00004.24 132 0.00048 13.3 0.0 1 3 0.045 4.6 0.4 0.0 38 57 81 100 24 115 0.79 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_17 - 518 AAA PF00004.24 132 0.00048 13.3 0.0 2 3 0.00033 0.034 7.3 0.0 1 21 228 248 228 277 0.83 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_17 - 518 AAA PF00004.24 132 0.00048 13.3 0.0 3 3 0.034 3.5 0.8 0.0 9 66 442 508 436 515 0.62 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_78 - 764 TraG-D_C PF12696.2 128 5.6e-07 22.4 0.1 1 1 1.2e-08 1.3e-06 21.3 0.1 1 88 437 524 437 553 0.83 # 62407 # 64698 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_53 - 228 Methyltransf_26 PF13659.1 117 7.1e-12 38.4 0.1 1 2 1.5e-07 1.6e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 228 Methyltransf_26 PF13659.1 117 7.1e-12 38.4 0.1 2 2 1e-07 1.1e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 518 AAA_30 PF13604.1 196 0.00018 14.0 0.0 1 1 3.2e-06 0.00033 13.2 0.0 4 44 211 251 209 280 0.86 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_7 - 195 DNA_pol3_delta PF06144.8 172 2.1e-06 20.3 0.0 1 1 3e-08 3.1e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 4502 # 5086 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_17 - 518 ABC_tran PF00005.22 137 8.3e-05 15.9 0.0 1 1 4.4e-06 0.00022 14.5 0.0 12 40 226 255 216 298 0.81 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 4.3e-06 0.00022 14.5 0.0 16 35 162 181 152 211 0.87 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_53 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.6 0.0 1 2 0.00039 0.04 6.2 0.0 112 146 18 54 9 81 0.65 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.6 0.0 2 2 3.9e-05 0.004 9.5 0.0 41 62 162 183 145 219 0.78 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 518 DAP3 PF10236.4 309 0.00065 11.6 0.0 1 1 1.2e-05 0.0012 10.7 0.0 21 42 223 244 214 253 0.86 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_17 - 518 AAA_19 PF13245.1 76 0.0001 15.0 0.0 1 1 2.7e-06 0.00027 13.6 0.0 10 46 226 259 218 270 0.79 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_93 - 1015 AAA_10 PF12846.2 304 7.6e-30 97.2 0.0 1 1 6.9e-31 1.8e-29 96.0 0.0 8 302 502 897 498 898 0.89 # 75806 # 78850 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_78 - 764 AAA_10 PF12846.2 304 2.6e-05 16.7 1.0 1 1 3.1e-06 8.1e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 62407 # 64698 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_17 - 518 AAA_10 PF12846.2 304 0.00022 13.6 0.0 1 1 1.7e-05 0.00044 12.7 0.0 4 30 228 256 226 304 0.78 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 383 AAA_10 PF12846.2 304 0.00053 12.4 0.0 1 1 4e-05 0.001 11.4 0.0 2 21 158 177 157 196 0.83 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_74 - 283 Methyltransf_27 PF13708.1 194 3.2e-67 218.7 0.0 1 1 4.2e-69 4.3e-67 218.3 0.0 2 194 85 278 84 278 0.96 # 57825 # 58673 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_78 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 1 2 9.3e-05 0.0096 7.4 0.0 11 32 132 153 126 157 0.84 # 62407 # 64698 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_78 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 2 2 3.1e-05 0.0032 9.0 0.1 247 332 440 525 427 542 0.88 # 62407 # 64698 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_53 - 228 MethyltransfD12 PF02086.10 260 0.00044 12.7 0.0 1 2 0.015 1.6 1.0 0.0 175 188 18 31 8 92 0.82 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 228 MethyltransfD12 PF02086.10 260 0.00044 12.7 0.0 2 2 4e-05 0.0041 9.5 0.0 20 46 163 189 148 197 0.78 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 383 RNA_helicase PF00910.17 107 9.9e-05 15.5 0.0 1 1 1.9e-06 0.0002 14.5 0.0 2 28 161 187 160 205 0.83 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_4 - 383 AAA_25 PF13481.1 194 0.0002 13.7 0.0 1 1 7e-06 0.00036 12.9 0.0 24 58 148 182 124 207 0.78 # 1689 # 2837 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_17 - 518 AAA_25 PF13481.1 194 0.00022 13.6 0.1 1 2 7.5e-05 0.0038 9.5 0.0 19 65 211 260 200 270 0.72 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_17 - 518 AAA_25 PF13481.1 194 0.00022 13.6 0.1 2 2 0.046 2.4 0.4 0.0 153 190 297 337 292 340 0.73 # 14566 # 16119 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_53 - 228 Methyltransf_15 PF09445.5 164 0.0008 11.9 0.0 1 2 0.042 4.3 -0.2 0.0 53 79 4 29 2 33 0.90 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_53 - 228 Methyltransf_15 PF09445.5 164 0.0008 11.9 0.0 2 2 4.3e-05 0.0045 9.5 0.0 3 31 166 194 164 208 0.86 # 44180 # 44863 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/49b48c12-1a65-4edd-95b5-f6b1004efa15 # Target file: checkm_output/bins/pm454/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm454/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/49b48c12-1a65-4edd-95b5-f6b1004efa15 checkm_output/bins/pm454/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:12 2020 # [ok]