# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 115 AAA_15 PF13175.1 415 1.5e-13 39.8 1.4 1 1 3.8e-14 1.5e-13 39.8 1.4 359 411 13 62 3 66 0.83 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_5 - 48 AAA_15 PF13175.1 415 1.4e-12 36.6 3.0 1 1 3.6e-13 1.4e-12 36.6 3.0 1 43 2 43 2 47 0.92 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 115 AAA_21 PF13304.1 303 2.8e-19 59.4 4.5 1 2 1.6e-19 6.5e-19 58.2 1.0 237 301 2 65 1 67 0.88 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_3 - 115 AAA_21 PF13304.1 303 2.8e-19 59.4 4.5 2 2 0.0095 0.038 3.2 0.1 105 147 69 111 66 114 0.86 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_5 - 48 AAA_21 PF13304.1 303 1.1e-06 18.1 0.8 1 1 3.5e-07 1.4e-06 17.7 0.8 1 22 24 45 24 46 0.93 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 115 NAD_synthase PF02540.12 242 4e-05 11.9 0.6 1 1 6.5e-06 5.2e-05 11.5 0.6 186 236 26 77 19 79 0.88 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_5 - 48 SMC_N PF02463.14 220 1.5e-11 33.2 0.6 1 1 4e-12 1.6e-11 33.2 0.6 1 48 1 45 1 47 0.93 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 115 SMC_N PF02463.14 220 1.6e-05 13.5 0.1 1 1 5e-06 2e-05 13.2 0.1 146 207 9 71 3 79 0.79 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_5 - 48 AAA_23 PF13476.1 202 1.6e-12 37.5 1.1 1 1 2e-13 1.6e-12 37.5 1.1 2 40 5 43 4 47 0.93 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_5 - 48 AAA_29 PF13555.1 62 2.9e-07 19.4 0.0 1 1 3.7e-08 2.9e-07 19.4 0.0 5 47 6 46 2 47 0.69 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_5 - 48 DUF2813 PF11398.3 373 1.6e-07 20.0 0.0 1 1 2e-08 1.6e-07 20.0 0.0 3 46 2 46 1 47 0.90 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4c0b6aba-3249-451a-b9b5-779c57476fa1 # Target file: checkm_output/bins/pm452/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm452/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4c0b6aba-3249-451a-b9b5-779c57476fa1 checkm_output/bins/pm452/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:08 2020 # [ok]