# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_65 - 252 Mg_chelatase PF01078.16 207 0.00052 12.3 0.0 1 1 1.8e-05 0.001 11.3 0.0 21 42 98 119 84 125 0.88 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_47 - 488 Mg_chelatase PF01078.16 207 0.00064 12.0 0.1 1 1 2.3e-05 0.0013 11.0 0.1 1 47 215 267 215 281 0.79 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_79 - 372 ATP_bind_3 PF01171.15 182 0.00017 14.2 0.0 1 2 5.2e-05 0.0059 9.2 0.0 1 59 52 110 52 129 0.78 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_79 - 372 ATP_bind_3 PF01171.15 182 0.00017 14.2 0.0 2 2 0.005 0.56 2.7 0.0 134 161 232 260 207 262 0.72 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 252 Methyltransf_32 PF13679.1 141 0.0012 11.6 0.3 1 1 2.4e-05 0.0027 10.5 0.2 32 55 108 131 84 148 0.81 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_99 - 347 Seryl_tRNA_N PF02403.17 108 0.029 7.5 46.3 1 5 0.019 2.1 1.5 8.8 39 98 89 152 77 158 0.72 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_99 - 347 Seryl_tRNA_N PF02403.17 108 0.029 7.5 46.3 2 5 0.00084 0.094 5.9 3.1 50 100 146 196 143 199 0.89 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_99 - 347 Seryl_tRNA_N PF02403.17 108 0.029 7.5 46.3 3 5 2.6e-06 0.00029 13.9 12.2 19 100 216 294 201 297 0.85 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_99 - 347 Seryl_tRNA_N PF02403.17 108 0.029 7.5 46.3 4 5 0.00031 0.034 7.3 2.1 62 105 284 327 282 330 0.90 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_99 - 347 Seryl_tRNA_N PF02403.17 108 0.029 7.5 46.3 5 5 0.0059 0.66 3.1 1.6 82 105 304 327 296 345 0.51 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_65 - 252 Rad17 PF03215.10 519 0.001 10.8 0.0 1 1 1.4e-05 0.0015 10.2 0.0 30 61 86 115 80 134 0.86 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 IstB_IS21 PF01695.12 178 1e-57 187.5 0.1 1 1 1.2e-59 1.4e-57 187.1 0.1 1 177 53 229 53 230 0.99 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_30 - 262 MipZ PF09140.6 261 2e-10 33.2 0.0 1 2 6.6e-10 7.4e-08 24.8 0.0 2 52 4 55 3 81 0.83 # 21599 # 22384 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_30 - 262 MipZ PF09140.6 261 2e-10 33.2 0.0 2 2 0.00031 0.035 6.2 0.0 89 122 117 150 89 166 0.74 # 21599 # 22384 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_97 - 504 UvrD_C_2 PF13538.1 104 8.5e-11 35.0 0.0 1 1 3.5e-12 3.9e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_47 - 488 AAA_2 PF07724.9 171 3.9e-06 19.9 0.0 1 1 1.9e-07 2.2e-05 17.5 0.0 6 92 245 325 240 333 0.90 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_8 - 622 DUF87 PF01935.12 229 8.2e-09 28.6 0.1 1 1 3.3e-10 1.8e-08 27.5 0.1 24 63 173 211 168 379 0.87 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_65 - 252 DUF87 PF01935.12 229 0.0012 11.7 2.7 1 2 0.00051 0.029 7.2 1.1 133 196 28 91 5 105 0.69 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 DUF87 PF01935.12 229 0.0012 11.7 2.7 2 2 0.0048 0.27 4.0 0.0 27 47 103 123 97 130 0.79 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_97 - 504 AAA_22 PF13401.1 131 3.6e-05 17.0 0.0 1 2 8e-05 0.003 10.8 0.0 8 68 23 92 17 122 0.63 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_97 - 504 AAA_22 PF13401.1 131 3.6e-05 17.0 0.0 2 2 0.015 0.56 3.4 0.0 82 124 189 225 164 229 0.77 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_8 - 622 AAA_22 PF13401.1 131 0.00014 15.1 0.0 1 1 1.2e-05 0.00047 13.4 0.0 3 68 171 231 166 287 0.83 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_47 - 488 AAA_22 PF13401.1 131 0.00054 13.2 1.1 1 1 0.00089 0.033 7.4 0.8 69 121 283 344 243 354 0.66 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_19 - 476 DNA_methylase PF00145.12 335 1.2e-10 34.1 0.0 1 2 2.1e-11 2.3e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 14795 # 16222 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 476 DNA_methylase PF00145.12 335 1.2e-10 34.1 0.0 2 2 0.0056 0.62 2.1 0.0 290 330 407 448 343 452 0.74 # 14795 # 16222 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_33 - 415 N6_N4_Mtase PF01555.13 231 6.4e-25 81.0 0.0 1 1 9.2e-27 1e-24 80.3 0.0 1 228 129 389 129 392 0.81 # 23314 # 24558 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_65 - 252 AAA_17 PF13207.1 121 4.5e-05 17.4 0.0 1 1 1.7e-06 9.3e-05 16.3 0.0 3 47 103 151 101 238 0.68 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_47 - 488 AAA_17 PF13207.1 121 0.00014 15.8 0.0 1 1 1.3e-05 0.00071 13.5 0.0 2 63 245 299 245 388 0.63 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_8 - 622 MobB PF03205.9 140 0.0006 12.6 0.0 1 1 1.7e-05 0.002 10.9 0.0 4 34 176 206 175 214 0.90 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_30 - 262 ArsA_ATPase PF02374.10 305 6.4e-06 18.4 0.0 1 2 3e-07 3.4e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 21599 # 22384 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_30 - 262 ArsA_ATPase PF02374.10 305 6.4e-06 18.4 0.0 2 2 0.029 3.2 -0.3 0.0 124 136 124 136 106 143 0.79 # 21599 # 22384 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_97 - 504 PhoH PF02562.11 205 2.9e-06 19.7 0.2 1 2 0.0026 0.15 4.3 0.0 22 45 22 45 4 61 0.78 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_97 - 504 PhoH PF02562.11 205 2.9e-06 19.7 0.2 2 2 1.5e-05 0.00084 11.7 0.0 122 168 196 240 193 255 0.83 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_65 - 252 PhoH PF02562.11 205 3.2e-06 19.6 0.2 1 2 0.028 1.6 0.9 0.0 140 169 56 83 49 95 0.76 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 PhoH PF02562.11 205 3.2e-06 19.6 0.2 2 2 3e-07 1.7e-05 17.2 0.1 8 51 88 131 81 196 0.77 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_8 - 622 T2SE PF00437.15 272 0.00021 13.3 0.0 1 1 5.9e-06 0.00033 12.6 0.0 116 162 163 206 124 227 0.78 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_65 - 252 T2SE PF00437.15 272 0.00031 12.7 0.0 1 1 8.6e-06 0.00048 12.1 0.0 54 148 18 119 3 128 0.62 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_47 - 488 Zeta_toxin PF06414.7 201 0.00019 13.6 0.0 1 1 3.1e-06 0.00035 12.7 0.0 18 52 244 277 239 314 0.90 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_79 - 372 TIGR02432 TIGR02432 189 4.5e-05 16.2 0.1 1 2 1.1e-05 0.0012 11.5 0.0 1 58 52 109 52 119 0.85 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_79 - 372 TIGR02432 TIGR02432 189 4.5e-05 16.2 0.1 2 2 0.0084 0.94 2.1 0.0 140 165 235 260 207 262 0.76 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 252 AAA_16 PF13191.1 185 2.9e-05 17.1 1.5 1 2 0.072 4.1 0.4 0.1 44 84 55 92 43 98 0.77 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 AAA_16 PF13191.1 185 2.9e-05 17.1 1.5 2 2 9.6e-07 5.4e-05 16.3 0.2 11 55 86 130 79 227 0.81 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_15 - 206 AAA_16 PF13191.1 185 4.8e-05 16.5 0.1 1 1 1.3e-06 7.1e-05 15.9 0.1 27 68 11 54 3 168 0.79 # 13004 # 13621 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.513 1_99 - 347 AAA_13 PF13166.1 712 0.0075 7.7 36.6 1 2 0.0019 0.21 2.9 28.3 283 457 85 259 71 272 0.58 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_99 - 347 AAA_13 PF13166.1 712 0.0075 7.7 36.6 2 2 2.3e-05 0.0026 9.2 23.2 287 474 160 339 154 345 0.78 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_30 - 262 CbiA PF01656.18 195 1.3e-30 99.3 0.0 1 1 1.5e-32 1.7e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 21599 # 22384 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_97 - 504 AAA_14 PF13173.1 128 1.8e-05 17.7 1.3 1 2 5.1e-05 0.0028 10.6 0.1 11 46 28 62 18 156 0.76 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_97 - 504 AAA_14 PF13173.1 128 1.8e-05 17.7 1.3 2 2 0.0023 0.13 5.3 0.0 51 99 176 227 127 241 0.73 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_65 - 252 AAA_14 PF13173.1 128 3.2e-05 16.9 0.0 1 1 1.1e-06 6.4e-05 16.0 0.0 3 71 100 170 98 241 0.74 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 AAA_29 PF13555.1 62 0.00087 11.9 0.0 1 1 1.6e-05 0.0018 10.9 0.0 23 41 99 117 90 132 0.79 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_47 - 488 AAA PF00004.24 132 2.4e-29 95.3 0.0 1 1 1.8e-30 1e-28 93.3 0.0 1 131 245 371 245 372 0.97 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_65 - 252 AAA PF00004.24 132 0.00073 12.8 0.0 1 1 3.2e-05 0.0018 11.6 0.0 1 35 102 139 102 202 0.73 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 Bac_DnaA PF00308.13 219 0.00026 13.7 0.0 1 1 3.7e-06 0.00042 13.0 0.0 35 110 100 175 67 199 0.84 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_97 - 504 UvrD_C PF13361.1 351 1e-10 34.6 0.0 1 1 1.7e-12 1.9e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_79 - 372 PAPS_reduct PF01507.14 174 3.9e-12 39.4 0.4 1 2 0.014 1.6 1.6 0.0 2 17 53 68 52 91 0.76 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_79 - 372 PAPS_reduct PF01507.14 174 3.9e-12 39.4 0.4 2 2 4.4e-13 4.9e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_27 - 212 N6_Mtase PF02384.11 311 4.1e-07 22.3 0.0 1 1 5.9e-09 6.7e-07 21.7 0.0 3 97 71 166 69 201 0.72 # 19405 # 20040 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_8 - 622 TraG-D_C PF12696.2 128 3.2e-15 49.2 0.0 1 1 5.1e-17 5.7e-15 48.4 0.0 1 124 471 595 471 599 0.83 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_30 - 262 AAA_31 PF13614.1 157 1.5e-10 34.3 0.0 1 1 2.6e-12 3e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 21599 # 22384 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_47 - 488 AAA_33 PF13671.1 143 0.00031 13.7 0.0 1 1 8.2e-06 0.00091 12.2 0.0 2 33 245 297 245 399 0.73 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_33 - 415 Methyltransf_26 PF13659.1 117 6.8e-05 16.0 0.0 1 2 6.1e-06 0.00069 12.8 0.0 68 116 126 180 47 181 0.83 # 23314 # 24558 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_33 - 415 Methyltransf_26 PF13659.1 117 6.8e-05 16.0 0.0 2 2 0.04 4.5 0.4 0.0 1 31 352 381 352 395 0.71 # 23314 # 24558 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_97 - 504 AAA_30 PF13604.1 196 5.5e-08 25.7 0.1 1 2 9.2e-07 0.0001 15.0 0.0 19 80 20 81 11 109 0.77 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_97 - 504 AAA_30 PF13604.1 196 5.5e-08 25.7 0.1 2 2 0.00017 0.019 7.5 0.0 115 133 211 229 174 278 0.75 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_8 - 622 FtsK_SpoIIIE PF01580.13 205 9.6e-08 24.8 0.0 1 2 2.6e-08 1.4e-06 20.9 0.0 36 81 168 211 136 234 0.79 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_8 - 622 FtsK_SpoIIIE PF01580.13 205 9.6e-08 24.8 0.0 2 2 0.028 1.6 1.2 0.0 176 204 481 509 472 510 0.86 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_15 - 206 FtsK_SpoIIIE PF01580.13 205 0.00081 11.9 0.2 1 1 4.7e-05 0.0026 10.3 0.0 34 53 4 23 1 28 0.83 # 13004 # 13621 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 504 AAA_19 PF13245.1 76 1.8e-09 30.4 0.0 1 1 8.4e-11 4.7e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_65 - 252 AAA_19 PF13245.1 76 0.00014 14.7 0.0 1 1 6.2e-06 0.00035 13.4 0.0 9 37 99 126 93 142 0.78 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_8 - 622 AAA_10 PF12846.2 304 1.1e-18 60.8 0.2 1 1 2.7e-20 3e-18 59.3 0.2 2 299 173 549 172 553 0.71 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_97 - 504 ResIII PF04851.10 184 1.2e-06 21.5 0.0 1 1 5.5e-08 3.1e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_8 - 622 ResIII PF04851.10 184 0.00012 15.0 0.0 1 1 4.2e-06 0.00024 14.0 0.0 23 57 170 206 129 214 0.74 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_99 - 347 DUF3584 PF12128.3 1201 0.019 5.3 51.1 1 2 0.0051 0.57 0.4 32.3 377 534 86 242 42 246 0.65 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_99 - 347 DUF3584 PF12128.3 1201 0.019 5.3 51.1 2 2 2e-05 0.0022 8.3 20.6 613 709 225 327 220 345 0.80 # 69063 # 70103 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_97 - 504 Viral_helicase1 PF01443.13 234 1e-10 34.6 0.0 1 3 1.4e-05 0.0016 11.0 0.0 2 49 23 73 22 87 0.67 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_97 - 504 Viral_helicase1 PF01443.13 234 1e-10 34.6 0.0 2 3 1.8e-05 0.0021 10.7 0.0 56 105 188 234 146 256 0.78 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_97 - 504 Viral_helicase1 PF01443.13 234 1e-10 34.6 0.0 3 3 5.2e-05 0.0058 9.2 0.0 176 227 404 462 344 467 0.75 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_8 - 622 DEAD PF00270.24 169 2.6e-05 16.8 0.0 1 1 4.4e-07 4.9e-05 15.9 0.0 13 52 171 208 159 231 0.85 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_47 - 488 DUF815 PF05673.8 250 1.8e-06 20.1 0.0 1 1 1e-07 5.6e-06 18.5 0.0 19 154 208 353 194 365 0.75 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_65 - 252 DUF815 PF05673.8 250 3.9e-05 15.7 0.1 1 1 1.6e-06 8.9e-05 14.5 0.1 42 84 85 130 49 187 0.68 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_8 - 622 DUF853 PF05872.7 504 9.6e-07 20.5 0.0 1 1 1.4e-08 1.5e-06 19.8 0.0 7 60 158 211 153 225 0.93 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_8 - 622 TrwB_AAD_bind PF10412.4 386 2.2e-19 62.3 0.0 1 2 4.4e-13 5e-11 34.8 0.0 10 54 167 211 161 313 0.70 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_8 - 622 TrwB_AAD_bind PF10412.4 386 2.2e-19 62.3 0.0 2 2 3.5e-10 3.9e-08 25.3 0.0 242 377 469 609 445 616 0.82 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_97 - 504 AAA_11 PF13086.1 236 3.2e-07 23.2 0.1 1 1 1.9e-08 2.1e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_65 - 252 Sigma54_activ_2 PF14532.1 138 3.6e-06 20.2 0.2 1 1 9.9e-08 1.1e-05 18.6 0.0 17 113 95 205 79 230 0.70 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_8 - 622 T4SS-DNA_transf PF02534.9 469 2.9e-05 15.8 0.0 1 2 5.6e-07 6.2e-05 14.7 0.0 37 114 168 248 125 346 0.72 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_8 - 622 T4SS-DNA_transf PF02534.9 469 2.9e-05 15.8 0.0 2 2 0.097 11 -2.6 0.0 328 389 494 555 474 572 0.74 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_8 - 622 ArgK PF03308.11 267 0.00012 13.9 0.0 1 1 1.8e-06 0.00021 13.2 0.0 12 68 158 209 153 214 0.88 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_79 - 372 tRNA_Me_trans PF03054.11 356 4.2e-05 15.2 0.0 1 2 1.1e-06 0.00013 13.6 0.0 2 71 52 122 51 144 0.74 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_79 - 372 tRNA_Me_trans PF03054.11 356 4.2e-05 15.2 0.0 2 2 0.042 4.7 -1.4 0.0 193 224 274 305 236 311 0.83 # 51170 # 52285 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 252 RNA_helicase PF00910.17 107 0.0013 12.0 0.0 1 1 2e-05 0.0022 11.3 0.0 2 27 103 137 102 190 0.63 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_97 - 504 UvrD-helicase PF00580.16 315 6.1e-17 54.9 3.9 1 2 2.9e-06 0.00032 13.1 0.1 2 38 8 44 7 64 0.81 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_97 - 504 UvrD-helicase PF00580.16 315 6.1e-17 54.9 3.9 2 2 3.4e-15 3.8e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 67265 # 68776 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_65 - 252 NACHT PF05729.7 166 0.001 11.8 3.2 1 3 0.039 4.4 -0.0 0.2 107 160 38 93 14 99 0.62 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 NACHT PF05729.7 166 0.001 11.8 3.2 2 3 1.6e-05 0.0017 11.1 0.1 3 20 102 119 100 128 0.90 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 NACHT PF05729.7 166 0.001 11.8 3.2 3 3 0.077 8.6 -1.0 0.0 53 89 134 168 120 187 0.70 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 AAA_25 PF13481.1 194 7.2e-06 18.6 0.2 1 2 2.1e-06 6e-05 15.6 0.0 23 54 88 120 71 131 0.83 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_65 - 252 AAA_25 PF13481.1 194 7.2e-06 18.6 0.2 2 2 0.094 2.6 0.4 0.0 135 151 153 169 129 185 0.76 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_47 - 488 AAA_25 PF13481.1 194 7.1e-05 15.3 3.6 1 3 0.049 1.4 1.3 1.4 36 55 245 264 224 275 0.81 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_47 - 488 AAA_25 PF13481.1 194 7.1e-05 15.3 3.6 2 3 0.00014 0.0039 9.6 0.0 127 176 287 336 270 348 0.69 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_47 - 488 AAA_25 PF13481.1 194 7.1e-05 15.3 3.6 3 3 0.017 0.47 2.9 0.0 69 172 337 440 325 448 0.66 # 31420 # 32883 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_30 - 262 AAA_25 PF13481.1 194 0.00044 12.7 0.0 1 1 2.4e-05 0.00068 12.1 0.0 42 91 12 51 11 134 0.78 # 21599 # 22384 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_8 - 622 AAA_25 PF13481.1 194 0.00044 12.7 0.0 1 1 4.9e-05 0.0014 11.1 0.0 20 137 159 265 145 272 0.78 # 3866 # 5731 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_65 - 252 APS_kinase PF01583.15 157 0.00025 13.8 0.2 1 1 7.4e-06 0.00083 12.1 0.0 5 34 102 131 98 142 0.88 # 42813 # 43568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c0b26a2e-303f-4cf8-bd21-a0a3e171b77a # Target file: checkm_output/bins/pm449/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm449/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c0b26a2e-303f-4cf8-bd21-a0a3e171b77a checkm_output/bins/pm449/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:09 2020 # [ok]