# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_144 - 351 Mg_chelatase PF01078.16 207 0.00014 15.1 0.1 1 2 0.00099 0.22 4.6 0.0 24 47 98 121 88 140 0.84 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_144 - 351 Mg_chelatase PF01078.16 207 0.00014 15.1 0.1 2 2 6.4e-05 0.015 8.5 0.0 88 143 142 199 134 239 0.77 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_68 - 792 ATP_bind_3 PF01171.15 182 0.0019 11.8 0.4 1 2 2.8e-05 0.0063 10.0 0.1 2 40 77 115 76 145 0.78 # 52989 # 55364 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 1_68 - 792 ATP_bind_3 PF01171.15 182 0.0019 11.8 0.4 2 2 0.089 20 -1.4 0.0 122 146 758 784 748 788 0.59 # 52989 # 55364 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 1_121 - 418 MipZ PF09140.6 261 9e-10 32.0 0.1 1 2 8.1e-07 0.00018 14.7 0.1 2 26 116 140 115 161 0.75 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_121 - 418 MipZ PF09140.6 261 9e-10 32.0 0.1 2 2 9.4e-07 0.00021 14.4 0.0 71 126 230 287 215 297 0.75 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_2 - 468 GIDA PF01134.17 392 3.1e-05 17.0 3.2 1 3 3.1e-07 6.9e-05 15.8 0.1 1 29 3 36 3 53 0.80 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 GIDA PF01134.17 392 3.1e-05 17.0 3.2 2 3 0.016 3.7 0.3 0.0 132 158 164 190 138 214 0.78 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 GIDA PF01134.17 392 3.1e-05 17.0 3.2 3 3 0.059 13 -1.6 0.9 349 388 409 458 388 462 0.58 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_142 - 126 SSB PF00436.20 104 0.00033 14.6 0.1 1 2 8.1e-06 0.0018 12.2 0.1 2 84 8 88 7 94 0.79 # 125232 # 125609 # 1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 1_142 - 126 SSB PF00436.20 104 0.00033 14.6 0.1 2 2 0.027 6.1 0.9 0.0 42 60 91 109 85 112 0.83 # 125232 # 125609 # 1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 1_140 - 595 UvrD_C_2 PF13538.1 104 5.3e-12 39.9 0.0 1 1 5.8e-14 1.3e-11 38.7 0.0 47 103 496 562 454 563 0.79 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 468 Pyr_redox_2 PF07992.9 201 1.5e-08 28.8 0.0 1 1 4.8e-10 1.1e-07 26.0 0.0 1 120 3 182 3 215 0.87 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_144 - 351 AAA_2 PF07724.9 171 6.3e-07 23.5 0.0 1 1 5.8e-09 1.3e-06 22.5 0.0 5 83 98 177 96 184 0.71 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_28 - 695 DUF87 PF01935.12 229 0.00025 14.9 0.0 1 1 2.5e-06 0.00057 13.8 0.0 25 68 200 242 185 281 0.87 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_96 - 559 MetW PF07021.7 193 4.8e-05 16.8 0.0 1 1 4.2e-07 9.5e-05 15.9 0.0 7 90 412 495 409 506 0.84 # 78081 # 79757 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_28 - 695 AAA_22 PF13401.1 131 0.00013 16.1 0.1 1 2 7.5e-05 0.0084 10.3 0.0 5 24 199 218 198 296 0.70 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_28 - 695 AAA_22 PF13401.1 131 0.00013 16.1 0.1 2 2 0.014 1.5 3.0 0.0 87 124 503 537 458 545 0.76 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_144 - 351 AAA_22 PF13401.1 131 0.0011 13.2 0.3 1 1 5.7e-05 0.0064 10.7 0.0 6 30 98 122 96 159 0.81 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 2_26 - 476 DNA_methylase PF00145.12 335 1e-74 245.7 0.0 1 1 6.9e-77 1.6e-74 245.0 0.0 1 331 92 453 92 456 0.88 # 17318 # 18745 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_144 - 351 AAA_17 PF13207.1 121 0.00089 14.2 0.0 1 1 1.2e-05 0.0027 12.6 0.0 2 46 99 141 98 195 0.74 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_121 - 418 ArsA_ATPase PF02374.10 305 2.1e-06 21.0 0.7 1 2 0.026 5.9 -0.2 0.0 214 274 14 76 6 84 0.76 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_121 - 418 ArsA_ATPase PF02374.10 305 2.1e-06 21.0 0.7 2 2 3.9e-07 8.7e-05 15.7 0.2 7 136 121 269 115 274 0.63 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_140 - 595 PhoH PF02562.11 205 4.7e-05 16.7 0.1 1 2 5.4e-05 0.012 8.9 0.0 6 61 5 61 2 78 0.77 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 PhoH PF02562.11 205 4.7e-05 16.7 0.1 2 2 0.0006 0.13 5.4 0.0 118 173 188 242 155 258 0.74 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 468 NAD_binding_8 PF13450.1 68 9.1e-07 22.9 0.0 1 1 1e-08 2.3e-06 21.6 0.0 1 49 6 56 6 74 0.80 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 FAD_binding_3 PF01494.14 356 7.1e-06 19.3 0.0 1 1 9e-08 2e-05 17.8 0.0 2 172 2 185 1 208 0.66 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_68 - 792 TIGR02432 TIGR02432 189 0.00051 13.7 0.4 1 1 5.3e-06 0.0012 12.5 0.1 2 40 77 115 76 146 0.72 # 52989 # 55364 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 1_121 - 418 Fer4_NifH PF00142.13 273 0.00086 12.6 0.1 1 1 8.1e-06 0.0018 11.5 0.0 7 59 122 177 116 207 0.77 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 2_22 - 407 AAA_13 PF13166.1 712 0.072 5.5 36.8 1 2 1.1e-05 0.0024 10.3 27.3 291 493 107 313 81 324 0.73 # 14183 # 15403 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.474 2_22 - 407 AAA_13 PF13166.1 712 0.072 5.5 36.8 2 2 0.02 4.6 -0.5 2.9 406 453 339 383 315 391 0.55 # 14183 # 15403 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.474 1_121 - 418 CbiA PF01656.18 195 3.5e-20 66.3 0.0 1 1 2.2e-22 4.9e-20 65.8 0.0 1 188 117 358 117 365 0.73 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_2 - 468 HI0933_like PF03486.9 409 3.5e-13 42.8 2.8 1 2 1.5e-08 3.3e-06 19.8 0.1 2 33 3 34 2 38 0.94 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 HI0933_like PF03486.9 409 3.5e-13 42.8 2.8 2 2 1.7e-09 3.8e-07 22.9 0.0 72 164 85 182 66 186 0.84 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 FAD_binding_2 PF00890.19 417 1.4e-36 120.3 0.5 1 1 7.7e-39 1.7e-36 119.9 0.5 1 408 3 431 3 442 0.80 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_144 - 351 AAA PF00004.24 132 0.0001 16.6 0.0 1 1 1e-06 0.00023 15.4 0.0 1 73 99 177 99 215 0.69 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_140 - 595 UvrD_C PF13361.1 351 5.1e-42 138.6 0.0 1 2 0.056 13 -0.9 0.0 216 294 10 84 3 85 0.74 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 UvrD_C PF13361.1 351 5.1e-42 138.6 0.0 2 2 8.7e-44 1.9e-41 136.6 0.0 2 348 254 564 253 567 0.89 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_68 - 792 PAPS_reduct PF01507.14 174 1.5e-08 28.7 0.0 1 1 1.3e-10 2.8e-08 27.8 0.0 3 149 78 263 76 267 0.73 # 52989 # 55364 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 1_112 - 171 rRNA_methylase PF06962.7 140 0.00061 13.6 0.0 1 1 3.8e-06 0.00085 13.1 0.0 65 113 32 76 28 121 0.73 # 92796 # 93308 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_144 - 351 Sigma54_activat PF00158.21 168 2.4e-05 17.9 0.0 1 1 1.6e-06 0.00035 14.1 0.0 17 115 91 184 77 219 0.60 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_2 - 468 Pyr_redox_3 PF13738.1 203 5.1e-08 27.2 0.0 1 1 4.8e-09 1.1e-06 22.9 0.0 1 141 5 187 5 191 0.74 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_96 - 559 N6_Mtase PF02384.11 311 0.00012 15.3 0.0 1 1 9.6e-07 0.00022 14.4 0.0 76 138 433 493 400 512 0.87 # 78081 # 79757 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_28 - 695 TraG-D_C PF12696.2 128 4.4e-11 36.8 0.1 1 1 4.1e-13 9.2e-11 35.8 0.1 2 111 505 616 504 630 0.82 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_121 - 418 AAA_31 PF13614.1 157 5.4e-06 20.5 0.2 1 2 5.5e-06 0.0012 12.8 0.0 9 128 123 270 121 295 0.81 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_121 - 418 AAA_31 PF13614.1 157 5.4e-06 20.5 0.2 2 2 0.0022 0.49 4.4 0.1 14 116 299 408 284 411 0.82 # 100679 # 101932 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_96 - 559 Methyltransf_26 PF13659.1 117 1.7e-10 35.1 0.1 1 1 1.7e-12 3.7e-10 33.9 0.1 1 116 421 517 421 518 0.83 # 78081 # 79757 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_140 - 595 AAA_30 PF13604.1 196 1.3e-05 18.9 0.0 1 3 1.1e-05 0.0025 11.5 0.0 4 66 6 66 4 84 0.76 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 AAA_30 PF13604.1 196 1.3e-05 18.9 0.0 2 3 0.0031 0.7 3.5 0.0 95 133 191 228 168 287 0.77 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 AAA_30 PF13604.1 196 1.3e-05 18.9 0.0 3 3 0.065 15 -0.9 0.0 64 88 409 432 399 443 0.79 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_28 - 695 FtsK_SpoIIIE PF01580.13 205 1.7e-06 21.7 0.1 1 2 1.5e-06 0.00034 14.1 0.0 23 80 182 236 168 243 0.82 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_28 - 695 FtsK_SpoIIIE PF01580.13 205 1.7e-06 21.7 0.1 2 2 0.001 0.23 4.9 0.0 170 204 511 542 502 543 0.81 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_96 - 559 MTS PF05175.9 170 6.7e-07 22.9 0.0 1 1 5.2e-09 1.2e-06 22.1 0.0 60 144 444 520 433 543 0.70 # 78081 # 79757 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_2 - 468 Lycopene_cycl PF05834.7 374 2.9e-05 17.1 0.0 1 2 5.6e-07 0.00013 15.0 0.0 1 41 3 41 3 77 0.89 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 Lycopene_cycl PF05834.7 374 2.9e-05 17.1 0.0 2 2 0.033 7.5 -0.7 0.0 103 143 145 186 133 195 0.78 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_144 - 351 ABC_tran PF00005.22 137 0.00038 14.8 0.0 1 1 3.8e-06 0.00085 13.7 0.0 14 117 99 225 95 229 0.56 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_140 - 595 AAA_19 PF13245.1 76 9.4e-08 25.8 0.0 1 1 1.3e-09 2.9e-07 24.3 0.0 4 74 13 85 9 87 0.76 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_115 - 894 AAA_10 PF12846.2 304 1.8e-67 221.9 0.1 1 1 3.8e-69 2.8e-67 221.3 0.1 1 304 456 813 456 813 0.95 # 95135 # 97816 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_28 - 695 AAA_10 PF12846.2 304 1.6e-17 57.9 0.0 1 1 5.2e-19 3.9e-17 56.6 0.0 2 300 199 582 198 586 0.82 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_140 - 595 AAA_10 PF12846.2 304 0.00063 13.3 0.0 1 1 2.3e-05 0.0017 11.8 0.0 1 22 16 37 16 47 0.84 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 AAA_12 PF13087.1 200 1e-08 28.9 0.1 1 3 0.00013 0.029 7.8 0.0 99 152 34 86 15 95 0.84 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 AAA_12 PF13087.1 200 1e-08 28.9 0.1 2 3 0.0048 1.1 2.6 0.0 5 38 240 273 237 377 0.81 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 AAA_12 PF13087.1 200 1e-08 28.9 0.1 3 3 1.4e-06 0.00033 14.1 0.0 143 195 499 562 415 567 0.82 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 468 FAD_oxidored PF12831.2 428 2.9e-10 33.8 0.2 1 1 1.9e-12 4.2e-10 33.2 0.2 1 69 3 89 3 181 0.55 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 DAO PF01266.19 358 3.5e-18 59.6 0.1 1 1 1.9e-18 4.3e-16 52.7 0.1 1 202 3 183 3 193 0.84 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_140 - 595 ResIII PF04851.10 184 0.00027 14.9 0.4 1 1 4.3e-06 0.00097 13.0 0.0 19 77 12 77 5 97 0.74 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 Viral_helicase1 PF01443.13 234 4.2e-07 23.7 0.1 1 3 0.0042 0.95 2.9 0.0 2 21 20 39 19 79 0.77 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 Viral_helicase1 PF01443.13 234 4.2e-07 23.7 0.1 2 3 0.022 4.9 0.6 0.0 40 135 167 261 142 290 0.69 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 Viral_helicase1 PF01443.13 234 4.2e-07 23.7 0.1 3 3 3.6e-07 8.2e-05 16.2 0.0 181 233 504 563 417 564 0.88 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_144 - 351 TIP49 PF06068.8 398 0.0008 12.2 0.0 1 2 9.1e-06 0.002 10.8 0.0 40 82 87 128 80 144 0.79 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_144 - 351 TIP49 PF06068.8 398 0.0008 12.2 0.0 2 2 0.088 20 -2.3 0.0 336 363 234 261 223 278 0.84 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_140 - 595 DEAD PF00270.24 169 0.00024 14.7 0.2 1 1 4.9e-06 0.0011 12.5 0.2 5 78 9 80 5 218 0.62 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 468 Pyr_redox PF00070.22 80 4.8e-07 24.2 0.0 1 2 6.3e-07 0.00014 16.3 0.0 2 33 4 35 3 53 0.87 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 Pyr_redox PF00070.22 80 4.8e-07 24.2 0.0 2 2 0.0031 0.69 4.5 0.0 44 72 132 160 116 169 0.80 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_28 - 695 DUF853 PF05872.7 504 0.00015 14.2 0.0 1 2 1.9e-06 0.00043 12.7 0.0 10 60 187 237 179 240 0.86 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_28 - 695 DUF853 PF05872.7 504 0.00015 14.2 0.0 2 2 0.071 16 -2.4 0.0 257 279 503 525 495 556 0.71 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_96 - 559 Methyltransf_27 PF13708.1 194 4.2e-58 190.1 0.1 1 1 8.6e-60 6.5e-58 189.5 0.1 2 194 93 296 92 296 0.95 # 78081 # 79757 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 2_20 - 152 Methyltransf_27 PF13708.1 194 1.9e-17 57.4 0.0 1 1 3.3e-19 2.5e-17 57.1 0.0 3 82 72 150 70 151 0.97 # 13368 # 13823 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 2_21 - 63 Methyltransf_27 PF13708.1 194 1.7e-08 28.2 0.0 1 1 2.4e-10 1.8e-08 28.2 0.0 152 194 16 58 4 58 0.88 # 13992 # 14180 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_28 - 695 TrwB_AAD_bind PF10412.4 386 1.9e-15 50.4 0.1 1 2 7.8e-07 0.00018 14.3 0.0 16 53 199 236 189 341 0.85 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_28 - 695 TrwB_AAD_bind PF10412.4 386 1.9e-15 50.4 0.1 2 2 1e-12 2.2e-10 33.7 0.0 183 375 433 640 403 647 0.70 # 28848 # 30932 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_85 - 60 UvrB PF12344.3 44 0.00078 13.0 0.1 1 1 4.2e-06 0.00094 12.8 0.1 9 31 10 32 5 40 0.87 # 66306 # 66485 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_144 - 351 Sigma54_activ_2 PF14532.1 138 0.00062 13.9 0.0 1 1 6e-06 0.0014 12.8 0.0 21 95 96 188 79 219 0.73 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_99 - 275 MethyltransfD12 PF02086.10 260 1.2e-53 176.3 0.0 1 1 5.8e-56 1.3e-53 176.1 0.0 1 259 10 255 10 256 0.93 # 81538 # 82362 # 1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_2 - 468 AlaDh_PNT_C PF01262.16 168 4.4e-05 17.1 0.0 1 2 9.4e-07 0.00021 14.9 0.0 23 69 4 50 2 91 0.84 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 468 AlaDh_PNT_C PF01262.16 168 4.4e-05 17.1 0.0 2 2 0.079 18 -1.1 0.0 14 44 112 143 107 148 0.78 # 1339 # 2742 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_140 - 595 UvrD-helicase PF00580.16 315 4.5e-30 99.0 7.3 1 3 7.7e-17 1.7e-14 47.8 0.1 2 106 5 92 4 119 0.87 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 UvrD-helicase PF00580.16 315 4.5e-30 99.0 7.3 2 3 3.9e-18 8.8e-16 52.1 0.7 210 314 147 248 111 249 0.84 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_140 - 595 UvrD-helicase PF00580.16 315 4.5e-30 99.0 7.3 3 3 0.0086 1.9 1.7 0.1 114 190 418 494 367 583 0.74 # 122116 # 123900 # 1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_144 - 351 AAA_5 PF07728.9 139 1.1e-38 126.2 0.0 1 1 7e-41 1.6e-38 125.6 0.0 1 139 98 238 98 238 0.97 # 126716 # 127768 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fd0aa4e7-b4df-40b5-b3b5-27809b66bb11 # Target file: checkm_output/bins/pm444/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm444/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fd0aa4e7-b4df-40b5-b3b5-27809b66bb11 checkm_output/bins/pm444/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:05 2020 # [ok]