# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_58 - 488 Mg_chelatase PF01078.16 207 0.00067 12.0 0.1 1 1 1.1e-05 0.0013 11.0 0.1 1 47 215 267 215 281 0.79 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_29 - 372 ATP_bind_3 PF01171.15 182 0.00021 14.0 0.0 1 2 6.3e-05 0.0074 8.9 0.0 1 59 52 110 52 123 0.78 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 372 ATP_bind_3 PF01171.15 182 0.00021 14.0 0.0 2 2 0.005 0.59 2.7 0.0 134 161 232 260 207 262 0.72 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 1_11 - 347 Seryl_tRNA_N PF02403.17 108 0.03 7.5 46.3 1 5 0.019 2.2 1.5 8.8 39 98 89 152 77 158 0.72 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_11 - 347 Seryl_tRNA_N PF02403.17 108 0.03 7.5 46.3 2 5 0.00084 0.098 5.9 3.1 50 100 146 196 143 199 0.89 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_11 - 347 Seryl_tRNA_N PF02403.17 108 0.03 7.5 46.3 3 5 2.6e-06 0.0003 13.9 12.2 19 100 216 294 201 297 0.85 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_11 - 347 Seryl_tRNA_N PF02403.17 108 0.03 7.5 46.3 4 5 0.00031 0.036 7.3 2.1 62 105 284 327 282 330 0.90 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_11 - 347 Seryl_tRNA_N PF02403.17 108 0.03 7.5 46.3 5 5 0.0059 0.68 3.1 1.6 82 105 304 327 296 345 0.51 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_74 - 262 MipZ PF09140.6 261 2.1e-10 33.2 0.0 1 2 6.6e-10 7.7e-08 24.8 0.0 2 52 4 55 3 81 0.83 # 52205 # 52990 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_74 - 262 MipZ PF09140.6 261 2.1e-10 33.2 0.0 2 2 0.00031 0.037 6.2 0.0 89 122 117 150 89 166 0.74 # 52205 # 52990 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 2_3 - 423 3HCDH_N PF02737.13 180 8.7e-06 18.6 0.1 1 1 1.7e-07 2e-05 17.4 0.1 1 39 5 43 5 68 0.91 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_13 - 504 UvrD_C_2 PF13538.1 104 8.9e-11 35.1 0.0 1 1 3.5e-12 4.1e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_58 - 488 AAA_2 PF07724.9 171 4.1e-06 19.9 0.0 1 1 1.9e-07 2.3e-05 17.5 0.0 6 92 245 325 240 333 0.90 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_94 - 622 DUF87 PF01935.12 229 9.9e-09 28.4 0.0 1 1 2.2e-10 2.5e-08 27.1 0.0 24 63 173 211 168 269 0.87 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_13 - 504 AAA_22 PF13401.1 131 0.00013 15.3 0.0 1 2 0.00027 0.011 9.1 0.0 13 68 28 92 22 122 0.62 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 504 AAA_22 PF13401.1 131 0.00013 15.3 0.0 2 2 0.015 0.58 3.4 0.0 82 124 189 225 164 229 0.77 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_94 - 622 AAA_22 PF13401.1 131 0.00015 15.1 0.0 1 1 1.2e-05 0.00049 13.4 0.0 3 68 171 231 166 287 0.83 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_58 - 488 AAA_22 PF13401.1 131 0.00056 13.2 1.1 1 1 0.00089 0.035 7.4 0.8 69 121 283 344 243 354 0.66 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_85 - 476 DNA_methylase PF00145.12 335 7e-11 34.9 0.0 1 2 2.1e-11 2.4e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 58375 # 59802 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_85 - 476 DNA_methylase PF00145.12 335 7e-11 34.9 0.0 2 2 0.0031 0.36 2.9 0.0 290 330 407 448 341 452 0.73 # 58375 # 59802 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_88 - 93 Ribosomal_L2_C PF03947.13 130 0.00058 12.8 0.0 1 1 6.3e-06 0.00073 12.5 0.0 74 111 44 80 24 82 0.86 # 61364 # 61642 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_71 - 415 N6_N4_Mtase PF01555.13 231 6.1e-25 81.1 0.0 1 1 9.2e-27 1.1e-24 80.3 0.0 1 228 129 389 129 392 0.81 # 50031 # 51275 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_58 - 488 AAA_17 PF13207.1 121 0.00015 15.8 0.0 1 1 6.3e-06 0.00074 13.5 0.0 2 63 245 299 245 388 0.63 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_94 - 622 MobB PF03205.9 140 0.00061 12.6 0.0 1 1 1.7e-05 0.002 10.9 0.0 4 34 176 206 175 214 0.90 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_74 - 262 ArsA_ATPase PF02374.10 305 6.4e-06 18.5 0.0 1 2 3e-07 3.5e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 52205 # 52990 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_74 - 262 ArsA_ATPase PF02374.10 305 6.4e-06 18.5 0.0 2 2 0.029 3.4 -0.3 0.0 124 136 124 136 106 143 0.79 # 52205 # 52990 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_13 - 504 PhoH PF02562.11 205 8.4e-06 18.2 0.2 1 2 0.004 0.47 2.7 0.0 23 45 23 45 4 60 0.76 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 504 PhoH PF02562.11 205 8.4e-06 18.2 0.2 2 2 7.5e-06 0.00087 11.7 0.0 122 168 196 240 193 255 0.83 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_94 - 622 T2SE PF00437.15 272 0.00021 13.3 0.0 1 1 2.9e-06 0.00034 12.6 0.0 116 162 163 206 124 227 0.78 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_58 - 488 Zeta_toxin PF06414.7 201 0.0002 13.6 0.0 1 1 3.1e-06 0.00037 12.7 0.0 18 52 244 277 239 314 0.90 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_29 - 372 TIGR02432 TIGR02432 189 4.9e-05 16.1 0.1 1 2 1.1e-05 0.0013 11.5 0.0 1 58 52 109 52 118 0.85 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 372 TIGR02432 TIGR02432 189 4.9e-05 16.1 0.1 2 2 0.0084 0.98 2.1 0.0 140 165 235 260 207 262 0.76 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 1_87 - 206 AAA_16 PF13191.1 185 4.9e-05 16.5 0.1 1 1 6.3e-07 7.4e-05 15.9 0.1 27 68 11 54 3 168 0.79 # 60514 # 61131 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.519 1_11 - 347 AAA_13 PF13166.1 712 0.0078 7.7 36.6 1 2 0.0019 0.22 2.9 28.3 283 457 85 259 71 272 0.58 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_11 - 347 AAA_13 PF13166.1 712 0.0078 7.7 36.6 2 2 2.3e-05 0.0027 9.2 23.2 287 474 160 339 154 345 0.78 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_74 - 262 CbiA PF01656.18 195 1.3e-30 99.3 0.0 1 1 1.5e-32 1.7e-30 99.0 0.0 1 170 5 205 5 229 0.77 # 52205 # 52990 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_13 - 504 AAA_14 PF13173.1 128 3e-05 17.1 1.5 1 2 3.9e-05 0.0046 10.0 0.1 12 46 29 62 19 155 0.77 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 504 AAA_14 PF13173.1 128 3e-05 17.1 1.5 2 2 0.0015 0.18 4.9 0.0 53 99 178 227 159 241 0.68 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_58 - 488 AAA PF00004.24 132 2.5e-29 95.3 0.0 1 1 9.1e-31 1.1e-28 93.3 0.0 1 131 245 371 245 372 0.97 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_13 - 504 UvrD_C PF13361.1 351 1.1e-10 34.6 0.0 1 1 1.7e-12 2e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_29 - 372 PAPS_reduct PF01507.14 174 4.1e-12 39.4 0.4 1 2 0.014 1.6 1.6 0.0 2 17 53 68 52 91 0.76 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 372 PAPS_reduct PF01507.14 174 4.1e-12 39.4 0.4 2 2 4.4e-13 5.2e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 1_77 - 212 N6_Mtase PF02384.11 311 4.3e-07 22.3 0.0 1 1 5.9e-09 7e-07 21.7 0.0 3 97 71 166 69 201 0.72 # 54549 # 55184 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_94 - 622 TraG-D_C PF12696.2 128 3.3e-15 49.2 0.0 1 1 5.1e-17 6e-15 48.4 0.0 1 124 471 595 471 599 0.83 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_3 - 423 NAD_binding_2 PF03446.10 163 4.4e-08 26.3 0.0 1 2 1e-07 1.2e-05 18.3 0.0 2 57 4 59 3 81 0.88 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 2_3 - 423 NAD_binding_2 PF03446.10 163 4.4e-08 26.3 0.0 2 2 0.00099 0.12 5.4 0.0 78 106 107 136 97 144 0.81 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_74 - 262 AAA_31 PF13614.1 157 1.5e-10 34.3 0.0 1 1 2.6e-12 3.1e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 52205 # 52990 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_58 - 488 AAA_33 PF13671.1 143 0.00032 13.7 0.0 1 1 8.2e-06 0.00096 12.2 0.0 2 33 245 297 245 399 0.73 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_71 - 415 Methyltransf_26 PF13659.1 117 6.8e-05 16.1 0.0 1 2 5.9e-06 0.00069 12.8 0.0 68 116 126 180 46 181 0.82 # 50031 # 51275 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_71 - 415 Methyltransf_26 PF13659.1 117 6.8e-05 16.1 0.0 2 2 0.038 4.5 0.5 0.0 1 31 352 381 352 397 0.71 # 50031 # 51275 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 423 NAD_Gly3P_dh_N PF01210.18 157 3.4e-05 16.7 0.1 1 1 1.1e-06 0.00013 14.8 0.0 2 83 6 89 5 126 0.82 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 2_3 - 423 2-Hacid_dh_C PF02826.14 178 2.2e-05 16.8 0.2 1 2 1.2e-06 0.00014 14.2 0.1 37 83 4 50 1 61 0.82 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 2_3 - 423 2-Hacid_dh_C PF02826.14 178 2.2e-05 16.8 0.2 2 2 0.032 3.7 -0.2 0.0 51 100 351 400 348 411 0.79 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_13 - 504 AAA_30 PF13604.1 196 3.5e-07 23.1 0.0 1 2 5.8e-06 0.00068 12.4 0.0 20 80 21 81 11 109 0.76 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 504 AAA_30 PF13604.1 196 3.5e-07 23.1 0.0 2 2 0.00017 0.02 7.5 0.0 115 133 211 229 174 278 0.75 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_3 - 423 ApbA PF02558.11 151 1.3e-06 21.0 0.5 1 1 2.8e-08 3.3e-06 19.7 0.0 1 77 6 85 6 87 0.82 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_94 - 622 FtsK_SpoIIIE PF01580.13 205 1e-07 24.8 0.0 1 2 2.6e-08 1.5e-06 20.9 0.0 36 81 168 211 136 234 0.79 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_94 - 622 FtsK_SpoIIIE PF01580.13 205 1e-07 24.8 0.0 2 2 0.028 1.6 1.2 0.0 176 204 481 509 472 510 0.86 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_87 - 206 FtsK_SpoIIIE PF01580.13 205 0.00085 11.9 0.2 1 1 4.7e-05 0.0027 10.3 0.0 34 53 4 23 1 28 0.83 # 60514 # 61131 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.519 2_3 - 423 UDPG_MGDP_dh_N PF03721.9 185 1.1e-54 177.7 0.3 1 1 2.6e-56 3e-54 176.3 0.1 2 180 5 192 4 197 0.94 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_13 - 504 AAA_19 PF13245.1 76 1.9e-08 27.1 0.0 1 1 4.4e-10 5.1e-08 25.8 0.0 8 75 18 77 12 78 0.88 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_94 - 622 AAA_10 PF12846.2 304 1.2e-18 60.6 0.2 1 1 2.8e-20 3.3e-18 59.2 0.2 2 299 173 549 172 553 0.71 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_13 - 504 ResIII PF04851.10 184 1.8e-06 21.0 0.0 1 1 8.1e-08 4.8e-06 19.6 0.0 23 75 17 69 7 107 0.78 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_94 - 622 ResIII PF04851.10 184 0.00012 15.0 0.0 1 1 4.2e-06 0.00025 14.0 0.0 23 57 170 206 129 214 0.74 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_3 - 423 Methyltransf_31 PF13847.1 152 4.5e-05 16.2 0.0 1 1 1.7e-06 0.0002 14.1 0.0 13 115 10 139 10 162 0.64 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_11 - 347 DUF3584 PF12128.3 1201 0.019 5.3 51.1 1 2 0.0051 0.6 0.4 32.3 377 534 86 242 42 246 0.65 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_11 - 347 DUF3584 PF12128.3 1201 0.019 5.3 51.1 2 2 2e-05 0.0023 8.3 20.6 613 709 225 327 220 345 0.80 # 7321 # 8361 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_13 - 504 Viral_helicase1 PF01443.13 234 1e-09 31.4 0.0 1 3 0.00013 0.016 7.8 0.0 2 49 23 73 22 87 0.65 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 504 Viral_helicase1 PF01443.13 234 1e-09 31.4 0.0 2 3 1.8e-05 0.0021 10.7 0.0 56 105 188 234 146 256 0.78 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 504 Viral_helicase1 PF01443.13 234 1e-09 31.4 0.0 3 3 5.2e-05 0.0061 9.2 0.0 176 227 404 462 344 467 0.75 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_94 - 622 DEAD PF00270.24 169 2.7e-05 16.8 0.0 1 1 4.4e-07 5.1e-05 15.9 0.0 13 52 171 208 159 231 0.85 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_58 - 488 DUF815 PF05673.8 250 1.8e-06 20.1 0.0 1 1 5e-08 5.8e-06 18.5 0.0 19 154 208 353 194 365 0.75 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 2_3 - 423 Pyr_redox PF00070.22 80 0.00068 13.2 0.1 1 1 1.8e-05 0.0022 11.6 0.1 2 33 6 37 5 54 0.86 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_94 - 622 DUF853 PF05872.7 504 1e-06 20.5 0.0 1 1 1.4e-08 1.6e-06 19.8 0.0 7 60 158 211 153 225 0.93 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_94 - 622 TrwB_AAD_bind PF10412.4 386 2.3e-19 62.3 0.0 1 2 4.4e-13 5.2e-11 34.8 0.0 10 54 167 211 161 314 0.70 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_94 - 622 TrwB_AAD_bind PF10412.4 386 2.3e-19 62.3 0.0 2 2 3.5e-10 4.1e-08 25.3 0.0 242 377 469 609 445 616 0.82 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_13 - 504 AAA_11 PF13086.1 236 4.7e-07 22.7 0.1 1 1 2.6e-08 3.1e-06 20.0 0.1 26 228 28 228 8 229 0.66 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_94 - 622 T4SS-DNA_transf PF02534.9 469 2.9e-05 15.9 0.0 1 2 5.2e-07 6.1e-05 14.8 0.0 37 115 168 249 125 365 0.73 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_94 - 622 T4SS-DNA_transf PF02534.9 469 2.9e-05 15.9 0.0 2 2 0.097 11 -2.6 0.0 328 389 494 555 474 572 0.74 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_94 - 622 ArgK PF03308.11 267 0.00013 13.9 0.0 1 1 1.8e-06 0.00022 13.2 0.0 12 68 158 209 153 214 0.88 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_29 - 372 tRNA_Me_trans PF03054.11 356 6.2e-05 14.8 0.0 1 2 1.6e-06 0.00019 13.1 0.0 2 67 52 118 51 142 0.74 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 372 tRNA_Me_trans PF03054.11 356 6.2e-05 14.8 0.0 2 2 0.042 4.9 -1.4 0.0 193 224 274 305 236 311 0.83 # 25138 # 26253 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 2_3 - 423 TrkA_N PF02254.13 116 6.6e-06 19.3 0.2 1 1 1.8e-07 2.1e-05 17.6 0.0 1 71 6 84 6 95 0.88 # 2096 # 3364 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_13 - 504 UvrD-helicase PF00580.16 315 1.3e-15 50.6 3.3 1 1 5.1e-15 6e-13 41.8 1.2 230 305 155 239 7 245 0.72 # 8648 # 10159 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_58 - 488 AAA_25 PF13481.1 194 7.5e-05 15.3 3.6 1 3 0.037 1.4 1.3 1.4 36 55 245 264 224 275 0.81 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_58 - 488 AAA_25 PF13481.1 194 7.5e-05 15.3 3.6 2 3 0.00011 0.0041 9.6 0.0 127 176 287 336 270 348 0.69 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_58 - 488 AAA_25 PF13481.1 194 7.5e-05 15.3 3.6 3 3 0.013 0.49 2.9 0.0 69 172 337 440 325 448 0.66 # 42134 # 43597 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_74 - 262 AAA_25 PF13481.1 194 0.00045 12.8 0.0 1 1 1.8e-05 0.00071 12.1 0.0 42 91 12 51 11 134 0.78 # 52205 # 52990 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_94 - 622 AAA_25 PF13481.1 194 0.00046 12.7 0.0 1 1 3.7e-05 0.0014 11.1 0.0 20 137 159 265 145 272 0.78 # 68397 # 70262 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e4e04902-b2cd-4ec0-bda4-00f768768558 # Target file: checkm_output/bins/pm442/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm442/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e4e04902-b2cd-4ec0-bda4-00f768768558 checkm_output/bins/pm442/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:06 2020 # [ok]