# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 340 Mg_chelatase PF01078.16 207 3e-05 15.0 0.0 1 1 1.2e-06 5.3e-05 14.2 0.0 18 59 167 208 154 232 0.82 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_33 - 220 cobW PF02492.14 178 0.00037 11.7 0.0 1 1 3.2e-05 0.0015 9.8 0.0 54 102 25 99 4 171 0.77 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 340 IstB_IS21 PF01695.12 178 1.8e-05 16.0 0.0 1 1 7.3e-07 3.3e-05 15.1 0.0 18 68 143 192 128 195 0.82 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_33 - 220 MipZ PF09140.6 261 4.4e-13 40.6 0.1 1 1 5.2e-12 2.3e-10 31.7 0.1 2 129 4 111 3 186 0.84 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_33 - 220 YhjQ PF06564.7 244 4.2e-05 14.7 0.0 1 2 0.0012 0.054 4.6 0.1 3 30 4 31 2 40 0.83 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_33 - 220 YhjQ PF06564.7 244 4.2e-05 14.7 0.0 2 2 0.0001 0.0045 8.1 0.0 109 154 74 117 51 127 0.84 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 340 AAA_22 PF13401.1 131 0.00022 13.2 0.0 1 1 9.3e-06 0.00042 12.3 0.0 7 36 174 203 165 239 0.74 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 AAA_17 PF13207.1 121 8.2e-06 18.5 0.0 1 1 1.3e-06 2.8e-05 16.7 0.0 3 22 175 194 173 268 0.81 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_39 - 254 AAA_17 PF13207.1 121 0.00021 13.9 0.0 1 1 1.6e-05 0.00037 13.1 0.0 3 95 8 121 6 242 0.82 # 31390 # 32151 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.349 1_22 - 340 AAA_21 PF13304.1 303 8.6e-05 14.3 0.0 1 1 3.8e-06 0.00017 13.3 0.0 3 25 175 203 174 236 0.74 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_39 - 254 Miro PF08477.8 119 0.00017 13.9 0.2 1 1 9.5e-06 0.00043 12.6 0.1 3 61 8 69 6 93 0.76 # 31390 # 32151 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.349 1_22 - 340 MobB PF03205.9 140 0.00021 12.8 0.0 1 2 2.7e-05 0.0012 10.3 0.0 4 38 175 208 173 214 0.79 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 MobB PF03205.9 140 0.00021 12.8 0.0 2 2 0.071 3.2 -0.8 0.0 74 98 291 317 274 325 0.72 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_33 - 220 ArsA_ATPase PF02374.10 305 1e-06 19.8 0.5 1 1 6.2e-08 1.4e-06 19.3 0.3 2 51 3 53 2 70 0.88 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_39 - 254 ArsA_ATPase PF02374.10 305 2.2e-05 15.3 0.1 1 1 2.3e-06 5.3e-05 14.1 0.1 5 70 8 74 5 94 0.77 # 31390 # 32151 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.349 1_22 - 340 T2SE PF00437.15 272 9.3e-64 206.6 0.0 1 1 2.5e-65 1.1e-63 206.4 0.0 5 266 17 315 13 320 0.95 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 G-alpha PF00503.15 389 9.1e-05 13.0 0.0 1 2 5.7e-06 0.00026 11.5 0.0 52 119 165 243 135 290 0.74 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 G-alpha PF00503.15 389 9.1e-05 13.0 0.0 2 2 0.055 2.5 -1.6 0.0 302 313 309 320 300 322 0.81 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 Zeta_toxin PF06414.7 201 0.00021 12.2 0.0 1 1 9.9e-06 0.00045 11.1 0.0 15 48 170 204 156 220 0.83 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_33 - 220 VirC1 PF07015.6 231 4.4e-09 27.5 0.0 1 1 1.6e-10 7.2e-09 26.8 0.0 2 109 3 106 2 114 0.75 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_39 - 254 Fer4_NifH PF00142.13 273 2.2e-05 15.5 0.8 1 2 2.6e-06 0.00012 13.1 0.1 5 63 9 67 5 93 0.74 # 31390 # 32151 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.349 1_39 - 254 Fer4_NifH PF00142.13 273 2.2e-05 15.5 0.8 2 2 0.035 1.6 -0.5 0.0 46 85 100 137 86 141 0.82 # 31390 # 32151 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.349 1_22 - 340 AAA_23 PF13476.1 202 7.7e-05 14.8 0.2 1 1 3e-06 0.00014 14.0 0.2 22 39 174 191 159 195 0.90 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 AAA_18 PF13238.1 129 5.1e-06 18.6 0.0 1 1 2.2e-07 9.9e-06 17.7 0.0 2 37 175 229 175 256 0.81 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_33 - 220 CbiA PF01656.18 195 1.8e-19 61.7 0.0 1 1 1e-20 2.4e-19 61.3 0.0 1 184 5 172 5 186 0.79 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_39 - 254 CbiA PF01656.18 195 3.8e-08 24.7 0.8 1 1 4.6e-09 1e-07 23.3 0.8 3 174 8 175 7 204 0.63 # 31390 # 32151 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.349 1_22 - 340 AAA_29 PF13555.1 62 2.1e-06 19.0 0.0 1 1 1.1e-07 5e-06 17.8 0.0 25 51 173 199 164 205 0.85 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 Sigma54_activat PF00158.21 168 2.5e-05 15.6 0.0 1 1 1.9e-06 8.4e-05 13.9 0.0 9 46 158 195 151 279 0.88 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_23 - 656 TraG-D_C PF12696.2 128 1.5e-26 84.5 0.0 1 1 6.9e-28 3.1e-26 83.5 0.0 2 127 436 560 435 561 0.88 # 15520 # 17487 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_33 - 220 AAA_31 PF13614.1 157 6.9e-07 21.1 0.0 1 2 0.00014 0.0063 8.2 0.0 1 57 3 59 3 74 0.75 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_33 - 220 AAA_31 PF13614.1 157 6.9e-07 21.1 0.0 2 2 1.7e-05 0.00077 11.2 0.0 111 150 74 112 47 115 0.87 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 340 AAA_30 PF13604.1 196 0.0004 11.7 0.0 1 1 1.6e-05 0.0007 11.0 0.0 10 42 164 195 161 204 0.76 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_22 - 340 FtsK_SpoIIIE PF01580.13 205 3.1e-05 15.3 0.0 1 1 2.2e-06 5e-05 14.6 0.0 36 58 168 191 142 233 0.86 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_17 - 791 FtsK_SpoIIIE PF01580.13 205 0.00018 12.8 0.1 1 1 1.5e-05 0.00034 11.9 0.1 37 54 415 439 405 441 0.75 # 9302 # 11674 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 340 ABC_tran PF00005.22 137 9.2e-06 17.8 0.0 1 1 3.2e-07 1.4e-05 17.2 0.0 14 64 174 222 164 310 0.78 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_17 - 791 Ubiquitin_3 PF14836.1 88 0.00024 12.6 0.0 1 1 1.3e-05 0.00058 11.3 0.0 19 45 700 726 687 741 0.80 # 9302 # 11674 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 340 AAA_19 PF13245.1 76 3.9e-06 18.4 0.0 1 1 1.9e-07 8.6e-06 17.3 0.0 4 35 165 195 162 221 0.82 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_17 - 791 AAA_10 PF12846.2 304 5.2e-27 86.8 0.0 1 1 1.8e-28 8e-27 86.2 0.0 2 291 424 700 423 707 0.86 # 9302 # 11674 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 340 ResIII PF04851.10 184 0.00016 13.3 0.0 1 1 5.8e-06 0.00026 12.6 0.0 12 50 160 195 133 207 0.78 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_23 - 656 TrwB_AAD_bind PF10412.4 386 5.4e-20 63.0 0.0 1 2 1.4e-08 3.3e-07 21.0 0.0 74 129 229 286 227 296 0.85 # 15520 # 17487 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_23 - 656 TrwB_AAD_bind PF10412.4 386 5.4e-20 63.0 0.0 2 2 2.5e-14 5.6e-13 39.9 0.0 162 369 348 563 300 577 0.74 # 15520 # 17487 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_22 - 340 TrwB_AAD_bind PF10412.4 386 0.00033 11.1 0.0 1 1 3.3e-05 0.00074 9.9 0.0 14 36 170 192 132 208 0.85 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_23 - 656 T4SS-DNA_transf PF02534.9 469 1.5e-89 292.4 0.0 1 1 4.5e-91 2e-89 292.0 0.0 3 456 101 600 99 610 0.86 # 15520 # 17487 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_33 - 220 AAA_25 PF13481.1 194 7.6e-05 13.9 0.1 1 1 2.7e-06 0.00012 13.2 0.1 34 64 3 35 1 55 0.77 # 25354 # 26013 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 340 AAA_28 PF13521.1 163 2.3e-05 16.2 0.0 1 1 9.3e-07 4.2e-05 15.3 0.0 2 37 174 214 173 241 0.85 # 14450 # 15469 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f8dfbd16-4bc5-4ee4-bb2b-32caf9c3eddb # Target file: checkm_output/bins/pm434/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm434/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f8dfbd16-4bc5-4ee4-bb2b-32caf9c3eddb checkm_output/bins/pm434/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:56 2020 # [ok]