# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 188 Methyltransf_12 PF08242.7 99 2.8e-05 17.3 0.0 1 1 5.6e-07 4.9e-05 16.5 0.0 1 99 55 144 55 144 0.86 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_23 - 228 UPF0020 PF01170.13 180 5.9e-06 18.7 0.0 1 2 0.00015 0.013 7.7 0.0 104 123 18 37 3 89 0.69 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_23 - 228 UPF0020 PF01170.13 180 5.9e-06 18.7 0.0 2 2 6.2e-05 0.0055 9.0 0.0 28 54 163 189 158 221 0.67 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_14 - 188 RrnaAD PF00398.15 262 3.9e-09 28.6 0.0 1 1 5.5e-11 4.9e-09 28.3 0.0 9 113 29 128 24 148 0.88 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_35 - 200 Seryl_tRNA_N PF02403.17 108 0.00011 15.0 7.9 1 2 0.01 0.93 2.3 0.4 52 87 93 125 79 132 0.57 # 36379 # 36978 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.727 1_35 - 200 Seryl_tRNA_N PF02403.17 108 0.00011 15.0 7.9 2 2 1.3e-06 0.00012 14.9 5.9 16 101 109 191 105 193 0.90 # 36379 # 36978 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.727 1_44 - 707 ABC_ATPase PF09818.4 448 0.00018 12.9 0.2 1 2 0.00092 0.082 4.1 0.0 241 265 491 516 477 523 0.90 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 ABC_ATPase PF09818.4 448 0.00018 12.9 0.2 2 2 0.00019 0.017 6.4 0.0 304 366 586 652 574 681 0.70 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 Rad17 PF03215.10 519 0.0001 13.8 0.0 1 1 1.7e-06 0.00015 13.2 0.0 38 63 245 270 238 305 0.88 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_1 - 168 IstB_IS21 PF01695.12 178 1.8e-20 65.8 0.0 1 1 6e-22 2.7e-20 65.3 0.0 123 177 80 134 73 135 0.92 # 248 # 751 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 129 IstB_IS21 PF01695.12 178 3e-09 29.3 0.0 1 1 1.1e-10 4.8e-09 28.6 0.0 125 156 94 125 89 128 0.92 # 10820 # 11206 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_28 - 389 MipZ PF09140.6 261 3.8e-06 18.8 0.4 1 2 3.5e-06 0.00031 12.6 0.0 2 47 108 153 107 157 0.87 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_28 - 389 MipZ PF09140.6 261 3.8e-06 18.8 0.4 2 2 0.0011 0.1 4.4 0.0 88 134 224 270 197 292 0.84 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_13 - 151 SSB PF00436.20 104 2e-41 132.9 0.3 1 1 2.6e-43 2.4e-41 132.6 0.3 1 101 6 109 6 112 0.96 # 18915 # 19367 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.585 1_14 - 188 Methyltransf_18 PF12847.2 112 1.5e-10 34.5 0.0 1 1 3.4e-12 3e-10 33.5 0.0 4 109 53 146 50 148 0.89 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_18 - 448 UvrD_C_2 PF13538.1 104 9.9e-07 21.7 1.1 1 1 1.5e-08 1.3e-06 21.3 0.1 3 102 32 135 30 137 0.74 # 17322 # 18665 # -1 # ID=2_18;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_44 - 707 DUF87 PF01935.12 229 0.00023 13.8 0.1 1 1 2.6e-06 0.00023 13.8 0.1 26 61 498 531 481 532 0.80 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 AAA_22 PF13401.1 131 1.1e-05 18.3 0.0 1 1 7.3e-07 3.3e-05 16.8 0.0 4 50 252 293 249 332 0.76 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 AAA_22 PF13401.1 131 2.4e-05 17.3 0.3 1 1 2.9e-06 0.00013 14.9 0.3 7 107 498 643 492 667 0.69 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 PRK PF00485.13 194 0.00062 12.1 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 22 497 518 497 560 0.88 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_23 - 228 N6_N4_Mtase PF01555.13 231 6.6e-37 119.9 0.0 1 1 3.3e-36 2.9e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_44 - 707 AAA_17 PF13207.1 121 4.8e-08 26.6 0.0 1 1 2.8e-09 1.3e-07 25.3 0.0 1 53 497 552 497 601 0.70 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 AAA_17 PF13207.1 121 2.7e-05 17.7 0.2 1 1 3.4e-06 0.00015 15.3 0.0 1 16 254 269 254 335 0.90 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 AAA_21 PF13304.1 303 1.1e-09 31.3 0.1 1 1 8.7e-09 7.7e-07 22.0 0.1 2 297 498 662 497 667 0.84 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 MobB PF03205.9 140 0.00015 14.2 0.0 1 1 7.5e-06 0.00034 13.1 0.0 2 35 254 287 253 296 0.89 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 MobB PF03205.9 140 0.00071 12.0 0.4 1 1 4.5e-05 0.002 10.6 0.1 2 21 497 516 496 524 0.87 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_28 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.4 1 2 1.7e-06 0.00015 13.6 0.1 9 36 115 142 109 151 0.89 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_28 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.4 2 2 0.0011 0.099 4.3 0.0 123 136 231 244 221 251 0.84 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_59 - 502 T2SE PF00437.15 272 3.2e-90 294.4 3.7 1 1 5e-92 4.5e-90 293.9 3.7 3 271 125 390 123 391 0.98 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 SMC_N PF02463.14 220 3.4e-09 28.9 1.0 1 2 0.0011 0.098 4.6 0.2 26 42 497 513 484 523 0.83 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 SMC_N PF02463.14 220 3.4e-09 28.9 1.0 2 2 3e-09 2.7e-07 22.8 0.0 136 210 605 675 515 682 0.74 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_28 - 389 VirC1 PF07015.6 231 5.9e-05 14.9 0.1 1 2 0.00028 0.025 6.3 0.0 4 42 109 147 107 154 0.91 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_28 - 389 VirC1 PF07015.6 231 5.9e-05 14.9 0.1 2 2 0.0003 0.027 6.2 0.1 84 139 235 290 222 312 0.77 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_59 - 502 Arch_ATPase PF01637.13 234 0.00039 12.9 0.0 1 1 8e-06 0.00071 12.0 0.0 15 61 248 293 242 339 0.73 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_59 - 502 AAA_16 PF13191.1 185 9.6e-08 24.9 0.5 1 2 0.027 1.2 1.8 0.0 40 122 121 184 120 223 0.74 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_59 - 502 AAA_16 PF13191.1 185 9.6e-08 24.9 0.5 2 2 4.1e-08 1.8e-06 20.8 0.1 14 117 242 354 237 398 0.68 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 AAA_16 PF13191.1 185 0.00025 13.8 0.3 1 1 1.3e-05 0.00057 12.6 0.3 24 106 495 587 489 660 0.56 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 AAA_23 PF13476.1 202 2e-06 21.0 0.0 1 1 4.2e-08 3.8e-06 20.1 0.0 18 43 251 276 236 325 0.80 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 AAA_18 PF13238.1 129 3.9e-06 20.0 1.5 1 2 9.3e-07 4.1e-05 16.6 0.5 1 26 498 527 498 599 0.75 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 AAA_18 PF13238.1 129 3.9e-06 20.0 1.5 2 2 0.09 4 0.5 0.0 47 91 632 672 613 682 0.79 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 AAA_18 PF13238.1 129 1.9e-05 17.8 0.0 1 1 1.7e-06 7.7e-05 15.8 0.0 1 69 255 329 255 390 0.67 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 4_2 - 513 AAA_13 PF13166.1 712 0.00025 12.3 1.0 1 1 3.1e-06 0.00028 12.1 0.1 362 438 6 82 1 102 0.91 # 855 # 2393 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.585 1_28 - 389 CbiA PF01656.18 195 8.9e-37 119.1 0.0 1 1 1.3e-38 1.2e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_14 - 188 Methyltransf_25 PF13649.1 101 6.9e-05 16.0 0.0 1 1 1.1e-06 0.0001 15.4 0.0 1 101 54 142 54 142 0.83 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_59 - 502 AAA_14 PF13173.1 128 4.7e-05 16.0 0.0 1 1 1e-06 9.2e-05 15.1 0.0 3 85 253 345 251 369 0.58 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_59 - 502 AAA_29 PF13555.1 62 2.1e-08 26.4 0.0 1 1 1.5e-09 6.8e-08 24.8 0.0 22 51 252 280 241 285 0.86 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 AAA_29 PF13555.1 62 4.1e-05 15.9 0.2 1 1 3.1e-06 0.00014 14.2 0.1 22 40 494 512 486 525 0.83 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_14 - 188 N6_Mtase PF02384.11 311 0.00022 13.1 0.0 1 2 1.6e-05 0.0015 10.4 0.0 28 64 32 68 21 83 0.87 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_14 - 188 N6_Mtase PF02384.11 311 0.00022 13.1 0.0 2 2 0.037 3.3 -0.6 0.0 127 137 114 124 104 133 0.81 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_44 - 707 DUF258 PF03193.11 161 1.9e-05 16.7 0.6 1 2 2.2e-06 0.0002 13.3 0.0 26 66 485 526 467 531 0.79 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 DUF258 PF03193.11 161 1.9e-05 16.7 0.6 2 2 0.019 1.7 0.6 0.0 23 49 581 607 561 608 0.80 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_28 - 389 AAA_31 PF13614.1 157 8.8e-10 31.5 0.0 1 2 1.4e-08 1.2e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_28 - 389 AAA_31 PF13614.1 157 8.8e-10 31.5 0.0 2 2 0.00018 0.016 7.9 0.1 110 152 227 268 223 272 0.84 # 29983 # 31149 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_59 - 502 NTPase_1 PF03266.10 168 0.00067 12.1 0.1 1 2 4.2e-05 0.0037 9.7 0.0 2 26 255 279 254 286 0.86 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_59 - 502 NTPase_1 PF03266.10 168 0.00067 12.1 0.1 2 2 0.095 8.5 -1.2 0.0 83 104 308 330 296 366 0.65 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_14 - 188 Methyltransf_26 PF13659.1 117 5e-14 45.1 0.0 1 1 2e-15 9.1e-14 44.3 0.0 2 114 52 147 51 150 0.91 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_23 - 228 Methyltransf_26 PF13659.1 117 4e-13 42.2 0.1 1 2 2.3e-08 1e-06 21.6 0.0 53 114 3 71 2 74 0.78 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_23 - 228 Methyltransf_26 PF13659.1 117 4e-13 42.2 0.1 2 2 1.9e-07 8.6e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_59 - 502 AAA_30 PF13604.1 196 0.00012 14.4 0.0 1 1 3e-06 0.00027 13.3 0.0 7 50 241 284 235 286 0.81 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_14 - 188 MTS PF05175.9 170 3.8e-09 28.9 0.0 1 1 5.9e-11 5.3e-09 28.4 0.0 31 141 50 149 41 166 0.84 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_14 - 188 Methyltrans_SAM PF10672.4 286 0.00035 12.2 0.0 1 1 5.5e-06 0.00049 11.7 0.0 195 261 112 173 94 180 0.81 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_44 - 707 ABC_tran PF00005.22 137 3.3e-37 120.6 0.0 1 1 1.5e-38 6.7e-37 119.6 0.0 1 137 485 634 485 634 0.89 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 ABC_tran PF00005.22 137 6.1e-05 16.1 0.0 1 1 3.2e-06 0.00014 14.9 0.0 13 57 254 302 249 371 0.73 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_23 - 228 Cons_hypoth95 PF03602.10 183 9.7e-06 17.8 0.0 1 2 0.0003 0.026 6.6 0.0 112 146 18 54 1 82 0.62 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_23 - 228 Cons_hypoth95 PF03602.10 183 9.7e-06 17.8 0.0 2 2 4e-05 0.0036 9.4 0.0 41 62 162 183 145 218 0.78 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_59 - 502 AAA_19 PF13245.1 76 1.2e-06 21.0 0.0 1 1 6.3e-08 5.6e-06 18.9 0.0 4 35 245 276 242 291 0.76 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 707 AAA_10 PF12846.2 304 0.00016 13.9 0.1 1 2 1.4e-05 0.0012 11.0 0.0 6 25 500 519 497 532 0.79 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 AAA_10 PF12846.2 304 0.00016 13.9 0.1 2 2 0.027 2.4 0.2 0.0 216 257 619 659 578 674 0.73 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 SbcCD_C PF13558.1 90 0.0005 12.8 0.1 1 1 5.2e-05 0.0046 9.7 0.1 61 86 621 646 592 650 0.81 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_14 - 188 Methyltransf_31 PF13847.1 152 5.3e-07 22.1 0.0 1 1 7.7e-09 6.9e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 4_2 - 513 DUF3584 PF12128.3 1201 0.0036 7.3 5.6 1 2 6.3e-06 0.00056 10.0 2.1 304 377 12 86 5 100 0.88 # 855 # 2393 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.585 4_2 - 513 DUF3584 PF12128.3 1201 0.0036 7.3 5.6 2 2 0.098 8.7 -3.9 0.1 277 304 374 401 357 417 0.48 # 855 # 2393 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.585 1_59 - 502 AAA_11 PF13086.1 236 0.00044 12.6 0.0 1 1 1.1e-05 0.001 11.4 0.0 7 75 241 303 235 367 0.58 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_14 - 188 TIGR00755 TIGR00755 256 1.8e-09 29.6 0.0 1 1 2.8e-11 2.5e-09 29.2 0.0 8 105 29 123 25 134 0.90 # 20192 # 20755 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_23 - 228 MethyltransfD12 PF02086.10 260 0.00032 12.9 0.0 1 2 0.013 1.1 1.3 0.0 176 188 19 31 7 87 0.85 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_23 - 228 MethyltransfD12 PF02086.10 260 0.00032 12.9 0.0 2 2 4e-05 0.0036 9.5 0.0 20 46 163 189 148 197 0.78 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_44 - 707 ArgK PF03308.11 267 0.00021 12.8 0.0 1 1 4.4e-06 0.00039 11.9 0.0 15 52 481 518 473 528 0.84 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 RNA_helicase PF00910.17 107 0.00099 12.1 0.8 1 2 0.00027 0.024 7.6 0.0 3 19 500 516 498 530 0.86 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 RNA_helicase PF00910.17 107 0.00099 12.1 0.8 2 2 0.018 1.6 1.7 0.1 48 104 622 676 618 678 0.77 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 AAA_25 PF13481.1 194 0.00021 13.5 0.0 1 2 4.7e-05 0.0021 10.2 0.0 29 50 491 512 482 532 0.88 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_44 - 707 AAA_25 PF13481.1 194 0.00021 13.5 0.0 2 2 0.065 2.9 -0.1 0.0 135 188 618 662 596 663 0.74 # 42739 # 44859 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.373 1_59 - 502 AAA_25 PF13481.1 194 0.00049 12.3 0.0 1 1 3.5e-05 0.0016 10.6 0.0 29 52 248 271 226 327 0.88 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_23 - 228 Methyltransf_15 PF09445.5 164 0.00085 11.6 0.0 1 2 0.057 5.1 -0.6 0.0 53 79 4 29 2 33 0.87 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_23 - 228 Methyltransf_15 PF09445.5 164 0.00085 11.6 0.0 2 2 4.2e-05 0.0038 9.5 0.0 3 31 166 194 164 209 0.86 # 26433 # 27116 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_59 - 502 AAA_5 PF07728.9 139 0.00062 12.3 0.0 1 1 1.9e-05 0.0017 10.9 0.0 2 95 255 351 254 383 0.70 # 57580 # 59085 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/37a97282-18d6-46eb-8687-1da1f90790f7 # Target file: checkm_output/bins/pm433/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm433/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/37a97282-18d6-46eb-8687-1da1f90790f7 checkm_output/bins/pm433/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:58 2020 # [ok]