# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 234 UPF0020 PF01170.13 180 4.4e-06 19.6 0.0 1 2 0.00015 0.0064 9.3 0.0 103 120 17 34 5 80 0.83 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 234 UPF0020 PF01170.13 180 4.4e-06 19.6 0.0 2 2 0.00028 0.012 8.4 0.0 28 51 170 193 165 227 0.75 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 4_2 - 188 UPF0020 PF01170.13 180 1.6e-05 17.8 0.0 1 1 2.2e-06 9.2e-05 15.3 0.0 19 54 41 78 39 138 0.74 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_20 - 676 UPF0020 PF01170.13 180 0.00029 13.7 0.1 1 2 0.00032 0.014 8.2 0.1 31 45 209 223 201 230 0.88 # 14477 # 16504 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_20 - 676 UPF0020 PF01170.13 180 0.00029 13.7 0.1 2 2 0.015 0.65 2.7 0.0 106 125 292 311 272 318 0.79 # 14477 # 16504 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_2 - 188 RrnaAD PF00398.15 262 3.2e-07 22.8 0.0 1 1 3.4e-09 4.3e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_55 - 260 IstB_IS21 PF01695.12 178 1.1e-65 213.6 0.0 1 1 2.2e-67 2.8e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_16 - 402 MipZ PF09140.6 261 1.1e-06 21.1 0.4 1 2 3.3e-05 0.0041 9.4 0.1 1 50 110 164 110 192 0.75 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_16 - 402 MipZ PF09140.6 261 1.1e-06 21.1 0.4 2 2 2.9e-05 0.0037 9.6 0.0 90 135 237 282 217 287 0.85 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 3_1 - 171 SSB PF00436.20 104 9.1e-43 137.7 0.3 1 1 8.7e-45 1.1e-42 137.4 0.3 1 103 6 112 6 113 0.97 # 156 # 668 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 4_2 - 188 Methyltransf_18 PF12847.2 112 1.2e-07 25.5 0.0 1 1 1.6e-09 2e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_36 - 1754 UvrD_C_2 PF13538.1 104 1.1e-07 25.2 0.2 1 1 5.7e-09 7.1e-07 22.6 0.0 3 102 1340 1443 1336 1445 0.77 # 30498 # 35759 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_22 - 1086 DEAD_2 PF06733.10 174 0.0011 11.6 0.2 1 1 2.3e-05 0.0029 10.3 0.0 122 156 412 444 404 454 0.86 # 17155 # 20412 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_16 - 880 DUF87 PF01935.12 229 5.8e-06 19.5 0.0 1 2 0.056 7 -0.4 0.2 113 171 312 362 304 396 0.60 # 10866 # 13505 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_16 - 880 DUF87 PF01935.12 229 5.8e-06 19.5 0.0 2 2 3e-07 3.8e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 10866 # 13505 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_55 - 260 AAA_22 PF13401.1 131 1.6e-06 21.6 0.0 1 2 8.3e-06 0.00052 13.4 0.1 4 28 101 125 98 148 0.75 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AAA_22 PF13401.1 131 1.6e-06 21.6 0.0 2 2 0.0016 0.1 6.0 0.0 77 101 151 178 124 201 0.64 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_36 - 1754 AAA_22 PF13401.1 131 0.00033 14.1 0.0 1 2 0.011 0.72 3.2 0.0 89 121 505 536 468 538 0.72 # 30498 # 35759 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 2_36 - 1754 AAA_22 PF13401.1 131 0.00033 14.1 0.0 2 2 0.00079 0.05 7.0 0.0 3 28 986 1011 983 1065 0.79 # 30498 # 35759 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_9 - 234 N6_N4_Mtase PF01555.13 231 1.5e-32 106.2 0.0 1 2 6.8e-13 8.5e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 234 N6_N4_Mtase PF01555.13 231 1.5e-32 106.2 0.0 2 2 2e-23 2.5e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_55 - 260 AAA_17 PF13207.1 121 0.00048 14.2 0.0 1 1 6.5e-06 0.00082 13.4 0.0 2 26 104 131 103 216 0.74 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_16 - 402 ArsA_ATPase PF02374.10 305 1.7e-05 17.2 0.0 1 1 3e-07 3.8e-05 16.0 0.0 4 136 113 255 110 257 0.75 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_55 - 260 PhoH PF02562.11 205 4e-07 22.7 0.1 1 1 5e-09 6.3e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AFG1_ATPase PF03969.11 362 0.00038 12.5 0.0 1 1 5.8e-06 0.00073 11.6 0.0 64 214 103 251 81 258 0.78 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_16 - 402 VirC1 PF07015.6 231 0.00018 13.8 0.0 1 3 0.082 10 -1.7 0.0 71 86 57 72 49 82 0.87 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_16 - 402 VirC1 PF07015.6 231 0.00018 13.8 0.0 2 3 0.015 1.9 0.7 0.0 4 26 112 134 110 141 0.83 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_16 - 402 VirC1 PF07015.6 231 0.00018 13.8 0.0 3 3 3.1e-05 0.0039 9.5 0.0 82 136 244 298 221 316 0.86 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_16 - 402 Fer4_NifH PF00142.13 273 1.3e-05 17.7 0.0 1 1 2e-07 2.6e-05 16.7 0.0 7 72 117 187 112 198 0.80 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 2_35 - 771 AAA_16 PF13191.1 185 3.6e-06 20.3 0.0 1 1 4.2e-07 1.8e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 28186 # 30498 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_22 - 1086 AAA_16 PF13191.1 185 8.5e-06 19.1 0.1 1 2 6.6e-06 0.00028 14.1 0.0 5 175 297 459 294 467 0.69 # 17155 # 20412 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_22 - 1086 AAA_16 PF13191.1 185 8.5e-06 19.1 0.1 2 2 0.041 1.7 1.8 0.0 31 160 459 596 456 621 0.52 # 17155 # 20412 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_55 - 260 AAA_16 PF13191.1 185 1.9e-05 18.0 2.4 1 1 3.6e-06 0.00015 15.0 0.1 23 51 100 128 86 149 0.80 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_16 - 402 CbiA PF01656.18 195 1.1e-23 76.9 0.1 1 1 3.7e-25 2.4e-23 75.8 0.0 1 148 112 299 112 346 0.76 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_55 - 260 CbiA PF01656.18 195 0.0012 11.5 0.0 1 1 2.5e-05 0.0016 11.1 0.0 3 42 105 145 104 254 0.75 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AAA_14 PF13173.1 128 4.5e-07 23.1 0.0 1 2 1.7e-08 2.2e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AAA_14 PF13173.1 128 4.5e-07 23.1 0.0 2 2 0.048 6.1 0.0 0.0 14 46 215 247 212 257 0.80 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AAA PF00004.24 132 2.7e-08 27.3 0.0 1 1 4.1e-10 5.2e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 Bac_DnaA PF00308.13 219 6.5e-09 28.9 0.0 1 1 7.8e-11 9.8e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_20 - 676 N6_Mtase PF02384.11 311 1.6e-52 171.7 0.0 1 1 5.9e-54 2.5e-52 171.1 0.0 5 275 155 460 152 472 0.84 # 14477 # 16504 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 278 N6_Mtase PF02384.11 311 4.4e-12 38.9 0.0 1 1 1.7e-13 7e-12 38.2 0.0 25 117 139 237 130 250 0.85 # 7375 # 8208 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 4_2 - 188 N6_Mtase PF02384.11 311 0.00012 14.4 0.0 1 2 7.9e-05 0.0033 9.7 0.0 28 71 32 75 21 93 0.82 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 4_2 - 188 N6_Mtase PF02384.11 311 0.00012 14.4 0.0 2 2 0.017 0.71 2.0 0.0 124 138 111 125 95 133 0.81 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_55 - 260 DUF258 PF03193.11 161 0.00027 13.4 0.0 1 1 3.7e-06 0.00046 12.6 0.0 26 59 92 125 80 153 0.82 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_35 - 771 TraG-D_C PF12696.2 128 8.8e-20 64.1 0.0 1 1 1.6e-21 2e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 28186 # 30498 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_16 - 402 AAA_31 PF13614.1 157 1.8e-07 24.4 0.3 1 2 2.8e-05 0.0035 10.5 0.0 2 71 111 183 110 211 0.76 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_16 - 402 AAA_31 PF13614.1 157 1.8e-07 24.4 0.3 2 2 1.6e-05 0.0021 11.3 0.1 110 148 238 275 233 280 0.89 # 11040 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_55 - 260 NTPase_1 PF03266.10 168 0.00029 13.8 0.1 1 2 0.0015 0.19 4.6 0.1 2 30 104 132 103 143 0.82 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 NTPase_1 PF03266.10 168 0.00029 13.8 0.1 2 2 0.0003 0.038 6.9 0.0 87 108 155 176 141 202 0.77 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 4_2 - 188 Methyltransf_26 PF13659.1 117 2.3e-13 43.5 0.1 1 1 1.2e-14 3.7e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_9 - 234 Methyltransf_26 PF13659.1 117 3.3e-11 36.5 0.2 1 2 1.3e-06 4e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 234 Methyltransf_26 PF13659.1 117 3.3e-11 36.5 0.2 2 2 7.9e-07 2.5e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_20 - 676 Methyltransf_26 PF13659.1 117 1.5e-08 27.9 0.0 1 1 1.1e-09 3.5e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 14477 # 16504 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 278 Methyltransf_26 PF13659.1 117 0.00011 15.5 0.1 1 1 7.2e-06 0.00023 14.5 0.1 3 66 171 239 170 271 0.81 # 7375 # 8208 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 2_36 - 1754 AAA_30 PF13604.1 196 1.9e-45 148.0 6.6 1 2 7.8e-07 9.8e-05 15.2 0.8 9 126 424 536 422 561 0.85 # 30498 # 35759 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 2_36 - 1754 AAA_30 PF13604.1 196 1.9e-45 148.0 6.6 2 2 2.6e-43 3.2e-41 134.3 0.6 2 186 971 1158 970 1162 0.94 # 30498 # 35759 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 2_16 - 880 FtsK_SpoIIIE PF01580.13 205 0.00014 14.6 0.0 1 1 2.7e-06 0.00034 13.3 0.0 39 63 480 506 466 508 0.85 # 10866 # 13505 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 4_2 - 188 MTS PF05175.9 170 1.4e-09 30.8 0.0 1 1 1.5e-11 1.9e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_55 - 260 ABC_tran PF00005.22 137 0.00066 13.2 0.2 1 1 2e-05 0.0026 11.3 0.1 8 31 98 121 95 132 0.86 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_9 - 234 Cons_hypoth95 PF03602.10 183 5e-06 19.2 0.0 1 2 0.00016 0.021 7.4 0.0 113 169 19 77 12 86 0.70 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 234 Cons_hypoth95 PF03602.10 183 5e-06 19.2 0.0 2 2 3.1e-05 0.0039 9.8 0.0 20 60 149 188 142 225 0.73 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_36 - 1754 AAA_19 PF13245.1 76 2.5e-06 20.4 0.4 1 1 4e-08 2.5e-06 20.4 0.4 8 74 984 1047 976 1051 0.71 # 30498 # 35759 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_55 - 260 AAA_19 PF13245.1 76 0.00085 12.3 0.2 1 1 5.3e-05 0.0033 10.5 0.0 11 35 103 126 95 157 0.81 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 4_2 - 188 Methyltransf_2 PF00891.13 242 0.0015 11.0 0.0 1 1 1.7e-05 0.0022 10.4 0.0 111 159 60 110 40 119 0.83 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_16 - 880 AAA_10 PF12846.2 304 9.7e-46 149.7 0.0 1 1 3.7e-47 1.6e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 10866 # 13505 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_35 - 771 AAA_10 PF12846.2 304 2.7e-09 30.1 0.0 1 1 1.9e-08 7.8e-07 22.0 0.0 3 296 187 494 186 499 0.63 # 28186 # 30498 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_55 - 260 AAA_10 PF12846.2 304 4.7e-05 16.1 0.2 1 2 0.043 1.8 1.1 0.0 106 155 28 69 4 89 0.61 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AAA_10 PF12846.2 304 4.7e-05 16.1 0.2 2 2 1.3e-05 0.00055 12.6 0.1 3 35 103 135 101 172 0.84 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_33 - 191 NodS PF05401.6 201 0.00096 11.8 0.0 1 2 0.049 6.1 -0.6 0.0 42 154 34 59 19 69 0.63 # 27119 # 27691 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 1_33 - 191 NodS PF05401.6 201 0.00096 11.8 0.0 2 2 2.8e-05 0.0035 9.9 0.0 25 70 99 144 87 172 0.84 # 27119 # 27691 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 1_22 - 1086 ResIII PF04851.10 184 2.5e-14 46.8 1.4 1 2 7.4e-16 9.3e-14 44.9 0.1 3 183 295 498 293 499 0.77 # 17155 # 20412 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_22 - 1086 ResIII PF04851.10 184 2.5e-14 46.8 1.4 2 2 0.037 4.6 0.2 0.1 138 158 655 675 587 708 0.72 # 17155 # 20412 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_35 - 771 TrwB_AAD_bind PF10412.4 386 1.2e-148 488.0 0.0 1 1 2.5e-150 1.5e-148 487.6 0.0 2 386 172 561 171 561 0.99 # 28186 # 30498 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 2_16 - 880 TrwB_AAD_bind PF10412.4 386 1.9e-05 16.6 0.2 1 1 8e-07 5.1e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 10866 # 13505 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_36 - 1754 AAA_11 PF13086.1 236 1.4e-05 18.0 0.1 1 1 7.3e-07 9.2e-05 15.3 0.0 2 75 971 1041 970 1064 0.81 # 30498 # 35759 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_55 - 260 Sigma54_activ_2 PF14532.1 138 0.0005 13.4 0.0 1 1 6.3e-06 0.00079 12.7 0.0 9 64 87 144 84 229 0.70 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_35 - 771 T4SS-DNA_transf PF02534.9 469 1.7e-08 26.6 0.0 1 2 0.08 10 -2.3 0.0 130 199 262 330 253 360 0.69 # 28186 # 30498 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 2_35 - 771 T4SS-DNA_transf PF02534.9 469 1.7e-08 26.6 0.0 2 2 3.3e-10 4.2e-08 25.3 0.0 274 393 392 507 361 559 0.74 # 28186 # 30498 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 4_2 - 188 TIGR00755 TIGR00755 256 8e-08 24.7 0.0 1 1 9e-10 1.1e-07 24.2 0.0 8 105 29 123 26 128 0.90 # 293 # 856 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_16 - 880 Pox_A32 PF04665.7 241 9.4e-05 15.0 0.0 1 1 1.5e-06 0.00019 14.0 0.0 6 40 474 508 470 523 0.82 # 10866 # 13505 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_55 - 260 AAA_24 PF13479.1 213 0.0017 11.2 0.1 1 1 3e-05 0.0038 10.0 0.1 5 23 103 121 99 127 0.85 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 NACHT PF05729.7 166 0.00016 14.6 0.0 1 1 2.1e-06 0.00026 13.9 0.0 3 49 104 151 102 200 0.81 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AAA_25 PF13481.1 194 9.1e-07 21.7 0.1 1 1 2.2e-08 2.8e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_9 - 234 Methyltransf_15 PF09445.5 164 0.00094 12.0 0.0 1 2 0.023 2.9 0.6 0.0 53 80 4 30 2 38 0.91 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 234 Methyltransf_15 PF09445.5 164 0.00094 12.0 0.0 2 2 7e-05 0.0088 8.8 0.0 3 30 173 200 171 213 0.90 # 4413 # 5114 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_22 - 1086 SNF2_N PF00176.18 299 0.00044 12.3 0.1 1 1 7.6e-06 0.00096 11.2 0.1 1 159 299 459 299 469 0.70 # 17155 # 20412 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_55 - 260 AAA_28 PF13521.1 163 0.00032 13.9 0.0 1 1 5e-06 0.00063 13.0 0.0 1 49 103 156 103 171 0.73 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_55 - 260 AAA_5 PF07728.9 139 2.3e-05 17.4 0.0 1 1 4.6e-07 5.7e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 47793 # 48572 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3e5fc76e-40d5-4daa-9021-f012ef1a3cc6 # Target file: checkm_output/bins/pm431/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm431/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3e5fc76e-40d5-4daa-9021-f012ef1a3cc6 checkm_output/bins/pm431/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:56 2020 # [ok]