# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 270 AAA_13 PF13166.1 712 0.036 4.1 22.4 1 2 0.00031 0.013 5.5 4.5 406 458 33 85 8 94 0.54 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_13 - 270 AAA_13 PF13166.1 712 0.036 4.1 22.4 2 2 0.00045 0.019 5.0 9.6 82 160 106 168 89 206 0.51 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_9 - 468 KaiC PF06745.8 227 5.1e-05 14.1 0.0 1 1 2.6e-06 0.00011 13.0 0.0 18 53 69 104 65 107 0.93 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_9 - 468 TraG-D_C PF12696.2 128 1.1e-09 29.9 0.0 1 1 4.6e-11 1.9e-09 29.1 0.0 1 127 278 404 278 405 0.79 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_9 - 468 FtsK_SpoIIIE PF01580.13 205 0.00018 12.6 0.0 1 1 1.5e-05 0.00064 10.9 0.0 14 59 44 92 33 95 0.78 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_9 - 468 AAA_19 PF13245.1 76 0.00033 12.1 0.0 1 1 2.4e-05 0.001 10.6 0.0 15 53 75 110 68 116 0.80 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_9 - 468 AAA_10 PF12846.2 304 4.7e-16 50.7 0.0 1 1 1.9e-16 7.9e-15 46.7 0.0 3 293 72 352 70 360 0.78 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_13 - 270 DUF3584 PF12128.3 1201 0.0071 5.3 22.4 1 2 2.7e-05 0.0011 7.9 3.3 598 657 28 87 21 94 0.90 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_13 - 270 DUF3584 PF12128.3 1201 0.0071 5.3 22.4 2 2 0.00076 0.032 3.1 11.2 608 674 107 173 101 180 0.83 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_9 - 468 TrwB_AAD_bind PF10412.4 386 1.6e-07 21.9 0.0 1 2 3.2e-07 1.3e-05 15.6 0.0 14 57 69 113 60 126 0.85 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_9 - 468 TrwB_AAD_bind PF10412.4 386 1.6e-07 21.9 0.0 2 2 0.00083 0.035 4.3 0.0 296 368 333 406 238 420 0.83 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e4c20841-13b7-46ff-bde3-5bb2a3b5e052 # Target file: checkm_output/bins/pm430/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm430/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e4c20841-13b7-46ff-bde3-5bb2a3b5e052 checkm_output/bins/pm430/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:55 2020 # [ok]