# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_9 - 191 MipZ PF09140.6 261 1.1e-14 45.7 0.4 1 1 8.5e-15 3.5e-13 40.8 0.4 2 129 2 111 1 136 0.85 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 2_9 - 191 YhjQ PF06564.7 244 0.0003 11.8 1.5 1 2 4.8e-05 0.002 9.1 1.3 4 62 3 63 1 82 0.73 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 2_9 - 191 YhjQ PF06564.7 244 0.0003 11.8 1.5 2 2 0.0078 0.32 1.9 0.0 106 145 71 108 54 114 0.77 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 2_11 - 174 SSB PF00436.20 104 2.4e-13 41.6 0.0 1 1 8e-15 3.3e-13 41.1 0.0 7 101 17 108 14 111 0.94 # 5688 # 6209 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.573 2_16 - 104 DUF87 PF01935.12 229 3e-05 15.5 0.1 1 1 8.8e-07 3.6e-05 15.3 0.1 102 160 30 86 25 101 0.71 # 8797 # 9108 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.349 2_9 - 191 SRP54 PF00448.17 196 0.0005 11.2 0.8 1 1 1.7e-05 0.00071 10.7 0.8 11 97 11 94 2 104 0.75 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 2_9 - 191 ArsA_ATPase PF02374.10 305 0.00035 11.2 0.1 1 1 1.2e-05 0.00049 10.8 0.1 8 36 8 36 1 40 0.82 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 2_9 - 191 CbiA PF01656.18 195 8.6e-22 69.1 0.0 1 1 3e-23 1.2e-21 68.6 0.0 1 164 3 152 3 174 0.81 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 2_15 - 121 MRP-L47 PF06984.8 87 0.00013 13.5 0.1 1 1 4.1e-06 0.00017 13.2 0.1 26 84 49 108 20 110 0.87 # 8422 # 8784 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 2_9 - 191 AAA_31 PF13614.1 157 4.9e-05 15.0 0.1 1 1 2.7e-06 0.00011 13.8 0.0 2 40 2 40 1 52 0.86 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 2_9 - 191 AAA_25 PF13481.1 194 2.2e-05 15.6 0.6 1 1 8.4e-07 3.4e-05 14.9 0.6 41 72 9 41 3 135 0.85 # 4622 # 5194 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ec8d802c-b1de-4863-b7d7-75c04db7c3c8 # Target file: checkm_output/bins/pm420/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm420/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ec8d802c-b1de-4863-b7d7-75c04db7c3c8 checkm_output/bins/pm420/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:49 2020 # [ok]