# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 402 MipZ PF09140.6 261 3.3e-06 18.4 0.0 1 2 0.0025 0.15 3.2 0.0 3 50 111 163 109 201 0.73 # 10323 # 11528 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_13 - 402 MipZ PF09140.6 261 3.3e-06 18.4 0.0 2 2 2.8e-06 0.00016 12.9 0.0 87 136 233 282 220 305 0.87 # 10323 # 11528 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_2 - 323 DUF87 PF01935.12 229 0.0003 12.8 0.2 1 3 5.2e-05 0.0031 9.5 0.0 26 52 43 69 40 73 0.85 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 DUF87 PF01935.12 229 0.0003 12.8 0.2 2 3 0.083 4.9 -1.0 0.0 135 194 79 139 68 151 0.68 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 DUF87 PF01935.12 229 0.0003 12.8 0.2 3 3 0.052 3 -0.3 0.0 119 195 196 299 168 308 0.64 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 NB-ARC PF00931.17 287 0.00023 12.2 0.3 1 1 5.9e-06 0.00035 11.6 0.3 8 104 29 126 22 144 0.74 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_22 PF13401.1 131 3.1e-16 51.9 0.3 1 1 1.1e-17 6.6e-16 50.8 0.3 3 129 39 170 36 172 0.77 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 PRK PF00485.13 194 0.00019 13.1 0.0 1 1 7e-06 0.00041 12.1 0.0 1 38 42 81 42 132 0.66 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_17 PF13207.1 121 7.5e-05 15.7 0.0 1 1 3.4e-06 0.0002 14.4 0.0 1 40 42 89 42 183 0.61 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 MobB PF03205.9 140 0.00019 13.3 0.1 1 1 1.1e-05 0.00066 11.6 0.0 2 31 42 70 41 86 0.78 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 T2SE PF00437.15 272 1.6e-06 19.3 0.7 1 1 1.3e-07 7.7e-06 17.1 0.7 110 161 22 72 6 137 0.81 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 Arch_ATPase PF01637.13 234 2.2e-05 16.4 0.2 1 1 8.6e-07 5.1e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_16 PF13191.1 185 2.5e-11 36.0 1.3 1 1 9.1e-12 2.7e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_20 - 733 AAA_16 PF13191.1 185 0.0001 14.5 0.0 1 1 1.3e-05 0.00038 12.6 0.0 21 55 182 216 179 246 0.85 # 16928 # 19126 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 323 AAA_18 PF13238.1 129 5.4e-05 15.7 0.0 1 1 1.7e-06 9.8e-05 14.9 0.0 1 23 43 90 43 139 0.67 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_7 - 372 AAA_13 PF13166.1 712 0.069 3.6 35.8 1 2 0.00055 0.032 4.7 28.2 273 455 74 262 53 280 0.68 # 6176 # 7291 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_7 - 372 AAA_13 PF13166.1 712 0.069 3.6 35.8 2 2 0.0075 0.44 1.0 25.4 279 476 159 354 153 363 0.51 # 6176 # 7291 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_13 - 402 CbiA PF01656.18 195 1.3e-18 59.2 0.0 1 1 4.6e-20 2.7e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 10323 # 11528 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_2 - 323 KaiC PF06745.8 227 0.00012 13.4 0.1 1 1 4.3e-06 0.00025 12.3 0.1 12 43 33 63 27 153 0.79 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_14 PF13173.1 128 2.5e-06 19.6 0.0 1 1 1.8e-07 1.1e-05 17.6 0.0 2 96 40 164 39 191 0.62 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA PF00004.24 132 9.5e-07 21.3 0.0 1 1 3.7e-08 2.2e-06 20.1 0.0 3 96 45 151 43 180 0.68 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_20 - 733 TraG-D_C PF12696.2 128 4.9e-21 67.1 0.0 1 2 0.098 5.8 -1.0 0.0 12 60 196 243 193 247 0.85 # 16928 # 19126 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 733 TraG-D_C PF12696.2 128 4.9e-21 67.1 0.0 2 2 4.3e-22 2.5e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 16928 # 19126 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_13 - 402 AAA_31 PF13614.1 157 0.00027 13.1 0.1 1 2 0.071 4.2 -0.6 0.0 12 61 120 174 110 209 0.55 # 10323 # 11528 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_13 - 402 AAA_31 PF13614.1 157 0.00027 13.1 0.1 2 2 3.1e-05 0.0018 10.3 0.0 108 147 235 273 231 279 0.86 # 10323 # 11528 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_2 - 323 AAA_33 PF13671.1 143 9.5e-05 14.5 0.0 1 1 3.7e-06 0.00022 13.3 0.0 1 45 42 100 42 132 0.60 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_30 PF13604.1 196 0.0001 14.1 0.4 1 1 5.3e-06 0.00031 12.5 0.4 15 128 38 164 27 169 0.55 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 ABC_tran PF00005.22 137 4.2e-06 19.3 0.1 1 1 1.4e-07 8.1e-06 18.4 0.1 2 90 31 120 30 159 0.75 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_19 PF13245.1 76 3.9e-05 15.6 0.3 1 1 3.3e-06 0.00019 13.3 0.1 6 37 36 67 32 119 0.75 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_20 - 733 AAA_10 PF12846.2 304 4.9e-07 21.5 0.0 1 2 0.0026 0.076 4.5 0.0 3 43 187 227 186 245 0.93 # 16928 # 19126 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 733 AAA_10 PF12846.2 304 4.9e-07 21.5 0.0 2 2 2.2e-06 6.4e-05 14.6 0.0 200 295 397 493 265 498 0.83 # 16928 # 19126 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 323 AAA_10 PF12846.2 304 6.1e-07 21.2 0.1 1 3 8.4e-06 0.00025 12.7 0.0 3 34 42 73 40 106 0.73 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_10 PF12846.2 304 6.1e-07 21.2 0.1 2 3 0.0016 0.048 5.2 0.0 216 244 120 149 78 165 0.79 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_10 PF12846.2 304 6.1e-07 21.2 0.1 3 3 0.075 2.2 -0.3 0.0 106 170 239 301 181 315 0.58 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 ResIII PF04851.10 184 6.4e-06 18.2 0.2 1 2 2e-05 0.0012 10.8 0.3 29 100 44 109 20 117 0.72 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 ResIII PF04851.10 184 6.4e-06 18.2 0.2 2 2 0.00043 0.025 6.5 0.0 129 162 107 140 84 153 0.64 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_7 - 372 DUF3584 PF12128.3 1201 0.053 2.9 61.6 1 1 0.0098 0.58 -0.6 61.5 261 533 79 352 68 366 0.57 # 6176 # 7291 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_2 - 323 DUF2075 PF09848.4 352 1e-06 20.1 0.1 1 1 2.6e-08 1.5e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_20 - 733 TrwB_AAD_bind PF10412.4 386 3.9e-145 475.4 0.0 1 1 1.7e-146 4.9e-145 475.0 0.0 2 386 172 561 171 561 0.99 # 16928 # 19126 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 323 TrwB_AAD_bind PF10412.4 386 8e-05 13.5 0.5 1 3 3.3e-05 0.00098 9.9 0.0 14 44 39 69 35 76 0.83 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 TrwB_AAD_bind PF10412.4 386 8e-05 13.5 0.5 2 3 0.042 1.2 -0.3 0.0 234 275 115 158 112 169 0.78 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 TrwB_AAD_bind PF10412.4 386 8e-05 13.5 0.5 3 3 0.073 2.2 -1.1 0.0 128 182 251 306 240 311 0.71 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_20 - 733 T4SS-DNA_transf PF02534.9 469 3.2e-12 37.8 0.0 1 1 9.4e-14 5.6e-12 37.0 0.0 274 392 392 506 361 543 0.81 # 16928 # 19126 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 323 PIF1 PF05970.9 364 2.1e-05 15.7 0.0 1 1 6.3e-07 3.7e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 UPF0079 PF02367.12 123 6.8e-05 14.7 0.0 1 1 2.2e-06 0.00013 13.8 0.0 3 45 28 70 26 114 0.84 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_35 - 129 BOF PF04076.8 103 4.7e-43 137.5 0.8 1 1 9.6e-45 5.7e-43 137.2 0.8 2 102 25 125 24 126 0.98 # 31841 # 32227 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_2 - 323 NACHT PF05729.7 166 0.00028 12.7 0.2 1 1 1.2e-05 0.00068 11.5 0.2 1 28 41 68 41 141 0.77 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_5 PF07728.9 139 4.9e-05 15.2 0.2 1 1 7e-06 0.00041 12.2 0.2 5 90 46 149 43 152 0.85 # 661 # 1629 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/95a24e86-7229-4ee8-a1b8-3398c72b6b6a # Target file: checkm_output/bins/pm415/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm415/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/95a24e86-7229-4ee8-a1b8-3398c72b6b6a checkm_output/bins/pm415/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:46 2020 # [ok]