# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_11 - 207 cobW PF02492.14 178 9.9e-05 13.4 0.2 1 2 1.8e-05 0.00074 10.6 0.0 10 38 12 41 3 47 0.86 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 cobW PF02492.14 178 9.9e-05 13.4 0.2 2 2 0.019 0.78 0.7 0.1 114 146 115 147 71 170 0.78 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 MipZ PF09140.6 261 7e-15 46.3 0.8 1 2 1.2e-11 5e-10 30.4 0.0 2 47 3 47 2 61 0.88 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 MipZ PF09140.6 261 7e-15 46.3 0.8 2 2 8.6e-07 3.4e-05 14.6 0.3 96 141 73 118 54 144 0.86 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 655 AAA_22 PF13401.1 131 7.3e-06 17.8 0.0 1 1 1.9e-06 7.6e-05 14.5 0.0 3 125 450 614 446 621 0.68 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 2_11 - 207 DUF1611 PF07755.6 301 1.3e-06 18.8 0.2 1 1 5.2e-08 2.1e-06 18.1 0.2 124 200 13 90 11 107 0.86 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 ATP_bind_1 PF03029.12 238 1.9e-05 15.9 0.0 1 1 8.4e-07 3.3e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 SRP54 PF00448.17 196 4.4e-05 14.6 0.5 1 1 3.8e-06 0.00015 12.8 0.4 11 53 12 49 2 141 0.73 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 AAA_17 PF13207.1 121 3.4e-05 16.3 0.0 1 1 1.3e-06 5.2e-05 15.7 0.0 9 80 12 86 11 157 0.70 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 MobB PF03205.9 140 1.1e-06 20.1 0.4 1 1 1.4e-07 5.4e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 LpxK PF02606.9 326 2.1e-05 15.1 0.1 1 1 8.4e-07 3.3e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 ArsA_ATPase PF02374.10 305 1.1e-08 26.0 0.2 1 1 4.8e-10 1.9e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 VirC1 PF07015.6 231 3.2e-15 47.4 0.2 1 1 1.6e-16 6.4e-15 46.4 0.2 1 131 1 123 1 173 0.80 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 Fer4_NifH PF00142.13 273 6.3e-07 20.4 0.0 1 1 2.8e-08 1.1e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 655 AAA_16 PF13191.1 185 0.00012 13.7 0.0 1 1 7.7e-06 0.00031 12.4 0.0 22 46 449 473 438 496 0.87 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 2_11 - 207 CbiA PF01656.18 195 3.7e-29 93.1 1.5 1 1 2.4e-30 9.5e-29 91.8 1.5 1 142 4 123 4 162 0.77 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 655 DUF258 PF03193.11 161 1e-05 16.4 0.1 1 1 5.4e-07 2.1e-05 15.3 0.1 6 64 421 480 417 490 0.84 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 2_11 - 207 AAA_31 PF13614.1 157 7.6e-09 27.3 0.3 1 2 8.7e-09 3.5e-07 21.9 0.0 1 39 2 40 2 64 0.93 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 AAA_31 PF13614.1 157 7.6e-09 27.3 0.3 2 2 0.0043 0.17 3.4 0.0 115 152 74 109 50 114 0.84 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 NTPase_1 PF03266.10 168 0.00013 13.4 0.1 1 2 1.1e-05 0.00046 11.5 0.0 7 58 10 66 5 94 0.80 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 NTPase_1 PF03266.10 168 0.00013 13.4 0.1 2 2 0.084 3.4 -1.0 0.1 76 99 149 172 119 176 0.66 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 AAA_30 PF13604.1 196 0.00012 13.3 0.6 1 2 7.4e-06 0.0003 12.0 0.1 26 106 10 88 2 97 0.75 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 AAA_30 PF13604.1 196 0.00012 13.3 0.6 2 2 0.095 3.8 -1.4 0.0 33 59 145 171 144 175 0.86 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 655 Dynamin_N PF00350.18 168 9.1e-05 13.9 0.3 1 2 0.00021 0.0085 7.5 0.0 1 22 454 475 454 491 0.88 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_3 - 655 Dynamin_N PF00350.18 168 9.1e-05 13.9 0.3 2 2 0.0033 0.13 3.7 0.2 86 162 561 638 527 644 0.77 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_3 - 655 ABC_tran PF00005.22 137 2e-17 55.4 0.0 1 1 9.2e-19 3.7e-17 54.5 0.0 2 137 442 586 441 586 0.86 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 2_11 - 207 AAA_10 PF12846.2 304 5.2e-06 17.6 0.0 1 1 2.3e-07 9.4e-06 16.8 0.0 11 47 12 50 10 69 0.82 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 655 DUF815 PF05673.8 250 9.7e-05 12.9 0.0 1 1 5.5e-06 0.00022 11.8 0.0 16 76 417 474 407 500 0.78 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 2_11 - 207 ArgK PF03308.11 267 4.4e-05 13.9 0.0 1 1 2.5e-06 0.0001 12.7 0.0 39 72 12 45 5 53 0.90 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 655 UPF0079 PF02367.12 123 6.7e-05 14.2 0.3 1 2 0.07 2.8 -0.8 0.1 37 85 16 64 7 73 0.79 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_3 - 655 UPF0079 PF02367.12 123 6.7e-05 14.2 0.3 2 2 9.2e-06 0.00037 11.8 0.0 11 37 447 473 439 477 0.87 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 2_11 - 207 AAA_24 PF13479.1 213 0.00026 12.2 0.7 1 2 1.7e-05 0.00067 10.9 0.1 12 88 11 95 3 99 0.81 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 2_11 - 207 AAA_24 PF13479.1 213 0.00026 12.2 0.7 2 2 0.078 3.1 -1.1 0.0 168 206 118 156 115 164 0.79 # 10887 # 11507 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 655 NACHT PF05729.7 166 1.9e-05 16.0 0.1 1 2 1.1e-05 0.00043 11.6 0.0 2 22 453 473 452 475 0.91 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_3 - 655 NACHT PF05729.7 166 1.9e-05 16.0 0.1 2 2 0.013 0.51 1.6 0.0 54 135 548 621 524 649 0.74 # 3478 # 5442 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/87bcf7f2-d52f-4331-bd11-098a6da3ee4b # Target file: checkm_output/bins/pm409/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm409/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/87bcf7f2-d52f-4331-bd11-098a6da3ee4b checkm_output/bins/pm409/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:42 2020 # [ok]