# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 354 Mg_chelatase PF01078.16 207 0.00018 12.7 0.0 1 1 5.3e-06 0.00028 12.1 0.0 24 60 179 215 169 257 0.75 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_6 - 269 IstB_IS21 PF01695.12 178 2.6e-06 18.9 0.0 1 1 8.4e-08 4.4e-06 18.2 0.0 41 69 17 45 2 54 0.83 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_29 - 354 AAA_22 PF13401.1 131 8.2e-05 14.8 0.0 1 1 3.2e-06 0.00017 13.7 0.0 8 46 181 213 177 244 0.84 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 ATP_bind_1 PF03029.12 238 4.6e-05 15.0 0.0 1 1 1.4e-06 7.2e-05 14.3 0.0 2 25 183 206 182 211 0.86 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 SRP54 PF00448.17 196 0.00028 12.3 0.0 1 1 8.6e-06 0.00045 11.7 0.0 4 30 180 206 177 213 0.84 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 AAA_17 PF13207.1 121 1.7e-05 17.7 0.0 1 1 1.2e-06 3.1e-05 16.8 0.0 4 32 182 212 180 265 0.76 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_6 - 269 AAA_17 PF13207.1 121 0.00034 13.5 0.0 1 1 2.6e-05 0.00068 12.5 0.0 2 28 26 53 25 145 0.57 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_29 - 354 AAA_21 PF13304.1 303 2.3e-06 19.7 0.0 1 1 1.3e-07 6.9e-06 18.1 0.0 3 32 181 209 180 243 0.71 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 MobB PF03205.9 140 4.4e-05 15.2 0.0 1 1 1.5e-06 7.8e-05 14.4 0.0 5 39 182 215 179 221 0.83 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 T2SE PF00437.15 272 2.2e-56 182.6 0.0 1 1 5.4e-58 2.8e-56 182.3 0.0 5 265 20 323 16 328 0.93 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 Zeta_toxin PF06414.7 201 8.5e-05 13.7 0.0 1 1 2.6e-06 0.00013 13.0 0.0 14 49 175 211 164 222 0.85 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 AAA_23 PF13476.1 202 0.0001 14.7 0.8 1 1 4.2e-06 0.00022 13.5 0.7 23 40 181 198 154 201 0.88 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_6 - 269 AAA_18 PF13238.1 129 9.5e-05 14.7 0.0 1 2 7.5e-06 0.00039 12.7 0.0 2 87 27 104 26 142 0.62 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_6 - 269 AAA_18 PF13238.1 129 9.5e-05 14.7 0.0 2 2 0.094 4.9 -0.5 0.0 72 91 206 225 158 261 0.76 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_6 - 269 CbiA PF01656.18 195 1.6e-06 19.6 0.0 1 1 4.5e-08 2.4e-06 19.1 0.0 2 113 26 121 25 176 0.80 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_29 - 354 AAA_14 PF13173.1 128 9.4e-05 14.3 0.0 1 1 6.3e-06 0.00016 13.5 0.0 6 47 181 220 177 276 0.73 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_6 - 269 AAA_14 PF13173.1 128 0.00018 13.4 0.4 1 1 1.6e-05 0.00041 12.3 0.0 4 87 25 102 22 130 0.56 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_29 - 354 AAA_29 PF13555.1 62 8.9e-07 20.4 0.0 1 1 6.4e-08 3.3e-06 18.6 0.0 17 51 174 205 167 210 0.76 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 AAA PF00004.24 132 0.00049 12.3 0.0 1 1 1.5e-05 0.00078 11.6 0.0 3 33 182 214 180 259 0.66 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_6 - 269 Sigma54_activat PF00158.21 168 2.8e-05 15.6 0.0 1 1 9.7e-07 5.1e-05 14.8 0.0 12 44 13 45 4 77 0.82 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_30 - 674 TraG-D_C PF12696.2 128 5.8e-30 95.8 0.0 1 1 2.1e-31 1.1e-29 94.9 0.0 2 126 468 589 467 591 0.88 # 25065 # 27086 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_29 - 354 AAA_33 PF13671.1 143 2.2e-05 16.4 0.0 1 1 6.9e-07 3.6e-05 15.7 0.0 3 21 181 199 180 268 0.82 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 AAA_30 PF13604.1 196 8.5e-05 14.2 0.0 1 1 2.7e-06 0.00014 13.4 0.0 21 46 180 205 170 214 0.84 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 FtsK_SpoIIIE PF01580.13 205 5.6e-05 14.6 0.0 1 1 2.2e-06 0.00011 13.6 0.0 37 58 175 197 149 199 0.77 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 ABC_tran PF00005.22 137 1.7e-06 20.4 0.0 1 1 7e-08 3.7e-06 19.3 0.0 14 58 180 222 171 295 0.82 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 AAA_19 PF13245.1 76 0.00031 12.5 0.0 1 1 1.1e-05 0.00058 11.6 0.0 10 36 179 202 173 218 0.82 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_24 - 842 AAA_10 PF12846.2 304 8.6e-24 76.4 0.0 1 1 4.7e-25 1.2e-23 75.9 0.0 1 291 427 727 427 734 0.82 # 17671 # 20196 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_29 - 354 AAA_10 PF12846.2 304 1.8e-05 16.2 0.0 1 1 1.3e-06 3.5e-05 15.3 0.0 4 36 180 212 178 215 0.88 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 PduV-EutP PF10662.4 143 0.00016 13.2 0.0 1 2 0.015 0.77 1.2 0.0 106 135 6 35 1 37 0.84 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 PduV-EutP PF10662.4 143 0.00016 13.2 0.0 2 2 4.9e-05 0.0025 9.3 0.0 5 23 181 199 178 221 0.83 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_48 - 68 UBX PF00789.15 82 0.00015 13.8 0.1 1 1 3.4e-06 0.00018 13.6 0.1 21 63 11 53 8 62 0.90 # 36609 # 36812 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.343 1_30 - 674 TrwB_AAD_bind PF10412.4 386 6.2e-19 59.7 0.1 1 2 0.00017 0.0043 7.6 0.0 75 131 248 308 242 321 0.75 # 25065 # 27086 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_30 - 674 TrwB_AAD_bind PF10412.4 386 6.2e-19 59.7 0.1 2 2 2e-17 5.1e-16 50.1 0.0 166 374 384 598 376 610 0.78 # 25065 # 27086 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_29 - 354 TrwB_AAD_bind PF10412.4 386 0.0004 11.0 0.0 1 1 2.5e-05 0.00066 10.3 0.0 17 48 179 210 170 214 0.77 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_30 - 674 T4SS-DNA_transf PF02534.9 469 5.8e-96 313.7 1.5 1 2 2.6e-28 1.3e-26 85.1 0.0 4 103 109 207 106 220 0.94 # 25065 # 27086 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_30 - 674 T4SS-DNA_transf PF02534.9 469 5.8e-96 313.7 1.5 2 2 2.8e-71 1.5e-69 226.7 1.3 104 459 242 641 232 649 0.85 # 25065 # 27086 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_29 - 354 Pox_A32 PF04665.7 241 1.3e-05 16.5 0.0 1 1 4e-07 2.1e-05 15.9 0.0 4 45 169 209 166 241 0.71 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_6 - 269 RNA_helicase PF00910.17 107 0.00027 13.1 0.1 1 1 1.4e-05 0.00075 11.7 0.1 1 26 26 51 26 119 0.73 # 5681 # 6487 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_29 - 354 NACHT PF05729.7 166 6.8e-05 14.5 0.0 1 1 3e-06 0.00016 13.4 0.0 4 23 181 200 179 207 0.88 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 AAA_28 PF13521.1 163 0.00041 12.3 0.0 1 1 1.5e-05 0.00079 11.4 0.0 3 23 181 204 179 220 0.75 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_29 - 354 AAA_5 PF07728.9 139 5.1e-05 15.0 0.0 1 1 2e-06 0.0001 14.0 0.0 3 33 181 211 179 224 0.86 # 23982 # 25043 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/001239a2-613c-4bbc-bd5e-7f85fa44e2ae # Target file: checkm_output/bins/pm404/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm404/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/001239a2-613c-4bbc-bd5e-7f85fa44e2ae checkm_output/bins/pm404/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:37 2020 # [ok]