# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 691 cobW PF02492.14 178 0.00027 13.4 0.0 1 1 6.1e-06 0.00065 12.2 0.0 3 34 196 227 194 235 0.86 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 5_6 - 212 MipZ PF09140.6 261 5.6e-11 34.9 3.1 1 2 2.7e-06 0.00014 13.9 0.5 4 25 5 26 2 37 0.84 # 2415 # 3050 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.399 5_6 - 212 MipZ PF09140.6 261 5.6e-11 34.9 3.1 2 2 9.8e-09 5.3e-07 21.9 0.1 83 139 59 115 34 167 0.75 # 2415 # 3050 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.399 1_33 - 290 MipZ PF09140.6 261 3.3e-09 29.2 0.1 1 2 1.2e-08 6.2e-07 21.7 0.0 6 41 35 70 31 94 0.86 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 290 MipZ PF09140.6 261 3.3e-09 29.2 0.1 2 2 0.0014 0.074 5.1 0.0 92 114 139 161 112 179 0.75 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 290 YhjQ PF06564.7 244 4.6e-08 25.6 0.0 1 1 9e-10 9.6e-08 24.6 0.0 10 147 38 175 32 180 0.75 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_51 - 1657 UvrD_C_2 PF13538.1 104 5.9e-12 38.7 0.5 1 2 1.5e-10 1.6e-08 27.7 0.0 3 99 827 926 825 929 0.74 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 UvrD_C_2 PF13538.1 104 5.9e-12 38.7 0.5 2 2 0.00022 0.024 7.9 0.1 49 104 1503 1558 1463 1558 0.77 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_18 - 858 DUF87 PF01935.12 229 2.8e-08 26.8 0.0 1 1 6.6e-10 7.1e-08 25.5 0.0 14 218 457 667 448 675 0.73 # 22015 # 24588 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_50 - 691 NB-ARC PF00931.17 287 0.00033 12.6 0.0 1 1 6.8e-06 0.00073 11.4 0.0 17 81 191 256 184 275 0.74 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 AAA_22 PF13401.1 131 7.7e-06 19.1 0.0 1 1 3.1e-07 3.3e-05 17.1 0.0 3 78 192 261 190 330 0.75 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 AAA_17 PF13207.1 121 0.00054 13.8 0.0 1 1 1.4e-05 0.0015 12.4 0.0 2 32 196 223 195 336 0.74 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_51 - 1657 MobB PF03205.9 140 1.5e-05 17.7 1.1 1 2 2.6e-06 0.00028 13.6 0.1 5 31 520 546 516 586 0.84 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 MobB PF03205.9 140 1.5e-05 17.7 1.1 2 2 0.018 1.9 1.2 0.1 70 118 926 978 914 998 0.68 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_33 - 290 ArsA_ATPase PF02374.10 305 2e-09 29.9 0.0 1 2 4.2e-09 4.5e-07 22.1 0.0 9 38 38 67 34 91 0.94 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 290 ArsA_ATPase PF02374.10 305 2e-09 29.9 0.0 2 2 0.00053 0.056 5.4 0.0 115 136 134 155 114 160 0.77 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_50 - 691 Zeta_toxin PF06414.7 201 1.6e-05 17.0 0.0 1 1 3.4e-07 3.7e-05 15.9 0.0 10 44 187 223 178 237 0.78 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 AAA_16 PF13191.1 185 6.9e-06 19.1 0.0 1 1 3.2e-07 1.7e-05 17.9 0.0 20 47 189 216 182 338 0.89 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_51 - 1657 AAA_16 PF13191.1 185 0.00067 12.7 0.0 1 1 3.7e-05 0.002 11.1 0.0 29 52 520 547 498 614 0.81 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_50 - 691 AAA_18 PF13238.1 129 2.2e-06 21.0 1.4 1 1 4.3e-08 4.7e-06 20.0 0.0 1 106 196 326 196 336 0.64 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_8 - 1295 AAA_13 PF13166.1 712 2.8e-54 177.7 15.5 1 1 4.6e-56 4.9e-54 176.8 15.5 503 712 1074 1278 1059 1278 0.92 # 8724 # 12608 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_33 - 290 CbiA PF01656.18 195 1.8e-19 62.9 0.0 1 1 1.1e-20 5.8e-19 61.2 0.0 5 175 36 235 34 251 0.72 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 5_6 - 212 CbiA PF01656.18 195 1.5e-10 33.8 0.1 1 1 4.6e-12 2.4e-10 33.1 0.1 2 146 5 126 4 172 0.76 # 2415 # 3050 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.399 1_50 - 691 AAA_29 PF13555.1 62 0.00084 11.9 0.0 1 1 2.4e-05 0.0026 10.4 0.0 24 40 194 210 180 214 0.82 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 AAA PF00004.24 132 0.00033 13.9 0.0 1 1 1.1e-05 0.0012 12.1 0.0 1 22 196 217 196 268 0.82 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 MMR_HSR1 PF01926.18 116 3.2e-05 16.9 0.0 1 1 1.5e-06 0.00016 14.6 0.0 2 35 196 234 195 266 0.72 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 TraG-D_C PF12696.2 128 1.7e-18 59.7 0.3 1 1 7.2e-20 7.7e-18 57.6 0.0 1 126 423 544 423 546 0.88 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_33 - 290 AAA_31 PF13614.1 157 2.8e-08 26.8 0.0 1 2 4.8e-05 0.0051 9.7 0.0 9 39 38 68 36 102 0.88 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 290 AAA_31 PF13614.1 157 2.8e-08 26.8 0.0 2 2 1.7e-06 0.00019 14.4 0.0 111 150 139 177 138 182 0.86 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_51 - 1657 NTPase_1 PF03266.10 168 1.4e-05 17.9 4.2 1 3 3.2e-05 0.0017 11.1 0.6 4 34 520 550 517 569 0.92 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 NTPase_1 PF03266.10 168 1.4e-05 17.9 4.2 2 3 0.073 3.9 0.1 0.0 125 162 844 880 837 884 0.85 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 NTPase_1 PF03266.10 168 1.4e-05 17.9 4.2 3 3 0.0074 0.4 3.4 0.1 107 162 1531 1587 1528 1593 0.81 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_50 - 691 NTPase_1 PF03266.10 168 0.00042 13.1 0.0 1 1 1.5e-05 0.00082 12.1 0.0 2 24 196 218 195 342 0.83 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 AAA_33 PF13671.1 143 0.00041 13.3 0.0 1 1 1.5e-05 0.0016 11.4 0.0 2 23 196 217 196 275 0.83 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_51 - 1657 AAA_30 PF13604.1 196 1.3e-61 200.6 0.5 1 2 1.2e-47 1.2e-45 148.4 0.1 2 190 499 681 498 685 0.96 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 AAA_30 PF13604.1 196 1.3e-61 200.6 0.5 2 2 1.8e-17 1.9e-15 49.9 0.1 9 186 1108 1285 1102 1293 0.95 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 ABC_tran PF00005.22 137 0.0017 11.6 0.0 1 1 1.6e-05 0.0017 11.6 0.0 13 67 517 569 509 657 0.80 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 AAA_19 PF13245.1 76 6e-08 25.4 0.1 1 1 1.4e-09 1.5e-07 24.1 0.1 12 74 517 572 505 574 0.81 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_18 - 858 AAA_10 PF12846.2 304 1.5e-37 122.6 0.2 1 1 4.5e-39 2.4e-37 121.9 0.2 2 267 469 744 468 753 0.88 # 22015 # 24588 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_50 - 691 AAA_10 PF12846.2 304 3.5e-12 39.3 0.0 1 1 2.6e-13 1.4e-11 37.3 0.0 3 302 195 504 194 506 0.74 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_51 - 1657 Viral_helicase1 PF01443.13 234 3e-12 39.5 0.2 1 2 3.5e-09 1.9e-07 23.8 0.0 3 103 520 627 518 639 0.85 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 1657 Viral_helicase1 PF01443.13 234 3e-12 39.5 0.2 2 2 1e-05 0.00056 12.5 0.0 184 233 885 931 830 932 0.72 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_50 - 691 Viral_helicase1 PF01443.13 234 9.9e-05 14.9 0.0 1 1 4.5e-06 0.00024 13.6 0.0 2 35 197 227 196 257 0.73 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_50 - 691 TrwB_AAD_bind PF10412.4 386 5.2e-108 354.0 0.0 1 1 1.3e-109 7.2e-108 353.5 0.0 2 386 180 565 179 565 0.99 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_18 - 858 TrwB_AAD_bind PF10412.4 386 0.0004 12.0 0.1 1 1 1.6e-05 0.00085 10.9 0.0 6 55 458 508 454 534 0.86 # 22015 # 24588 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_51 - 1657 AAA_11 PF13086.1 236 3.3e-05 16.5 0.5 1 1 3.1e-07 3.3e-05 16.5 0.5 2 95 499 622 498 774 0.58 # 48021 # 52991 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_33 - 290 ParA PF10609.4 81 0.00017 14.5 0.0 1 1 2.9e-06 0.00031 13.6 0.0 2 50 147 193 146 218 0.81 # 34973 # 35842 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_50 - 691 T4SS-DNA_transf PF02534.9 469 1.4e-13 43.2 0.0 1 1 3.9e-15 4.1e-13 41.6 0.0 221 431 337 551 147 600 0.82 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 7_3 - 267 NAD_binding_5 PF07994.7 295 0.0011 11.5 0.1 1 1 1.5e-05 0.0016 10.9 0.1 78 129 158 207 144 226 0.79 # 697 # 1497 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.390 1_50 - 691 AAA_25 PF13481.1 194 0.00075 11.9 0.0 1 1 2.8e-05 0.003 10.0 0.0 28 53 186 213 159 216 0.66 # 45948 # 48020 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/67409a21-f947-462a-8a0a-fad45d7fd027 # Target file: checkm_output/bins/pm4/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm4/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/67409a21-f947-462a-8a0a-fad45d7fd027 checkm_output/bins/pm4/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:36 2020 # [ok]