# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_18 - 227 UPF0020 PF01170.13 180 0.00074 12.4 0.0 1 2 0.00016 0.021 7.6 0.0 103 119 17 33 6 85 0.76 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 227 UPF0020 PF01170.13 180 0.00074 12.4 0.0 2 2 0.0053 0.69 2.7 0.0 29 53 164 187 159 217 0.69 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_41 - 79 cobW PF02492.14 178 3.2e-05 16.7 0.1 1 1 6e-07 3.9e-05 16.4 0.1 4 25 48 73 45 78 0.78 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 4_3 - 181 cobW PF02492.14 178 0.0011 11.7 0.0 1 1 2.6e-05 0.0017 11.1 0.0 2 22 2 22 1 30 0.79 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_41 - 79 IstB_IS21 PF01695.12 178 0.00033 13.3 0.0 1 1 2.6e-06 0.00034 13.3 0.0 38 69 35 66 9 75 0.76 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_12 - 402 MipZ PF09140.6 261 7.4e-06 18.4 0.0 1 2 0.0025 0.33 3.2 0.0 3 50 111 163 109 201 0.73 # 6892 # 8097 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_12 - 402 MipZ PF09140.6 261 7.4e-06 18.4 0.0 2 2 2.8e-06 0.00036 12.9 0.0 87 136 233 282 220 305 0.87 # 6892 # 8097 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_26 - 173 SSB PF00436.20 104 3.6e-43 139.0 0.4 1 1 3.6e-45 4.7e-43 138.6 0.4 1 103 6 112 6 113 0.96 # 17440 # 17958 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_66 - 1753 UvrD_C_2 PF13538.1 104 6.8e-08 25.9 0.4 1 1 4.9e-09 6.3e-07 22.8 0.2 3 102 1337 1440 1335 1442 0.79 # 50312 # 55570 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_47 - 883 DUF87 PF01935.12 229 1.8e-07 24.4 0.0 1 1 1.1e-08 7.2e-07 22.5 0.0 26 221 482 668 468 676 0.75 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 2_3 - 323 DUF87 PF01935.12 229 0.00077 12.6 0.2 1 1 0.0001 0.0068 9.5 0.0 26 52 43 69 40 73 0.85 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 NB-ARC PF00931.17 287 0.00052 12.2 0.3 1 1 5.9e-06 0.00077 11.6 0.3 8 104 29 126 22 144 0.74 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 AAA_22 PF13401.1 131 6.5e-16 52.0 0.3 1 1 3.4e-17 1.5e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 AAA_22 PF13401.1 131 2.2e-05 17.9 0.0 1 1 9.9e-07 4.3e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_41 - 79 AAA_22 PF13401.1 131 0.0001 15.7 0.0 1 1 5.6e-06 0.00024 14.5 0.0 4 31 44 71 36 76 0.85 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 PRK PF00485.13 194 0.00044 13.1 0.0 1 1 7e-06 0.00091 12.1 0.0 1 38 42 81 42 132 0.66 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 AAA_15 PF13175.1 415 0.00049 12.4 0.1 1 1 3.8e-06 0.00049 12.4 0.1 16 54 10 76 1 78 0.67 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_18 - 227 N6_N4_Mtase PF01555.13 231 1.2e-34 113.1 0.0 1 1 4.4e-34 5.7e-32 104.3 0.0 1 227 21 199 21 203 0.91 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 4_3 - 181 AAA_17 PF13207.1 121 7.9e-07 23.2 0.1 1 1 2.3e-08 1.5e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_3 - 323 AAA_17 PF13207.1 121 0.00019 15.5 0.1 1 1 6.8e-06 0.00044 14.4 0.0 1 40 42 89 42 186 0.63 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 MobB PF03205.9 140 0.00041 13.3 0.1 1 1 3.4e-05 0.0015 11.6 0.0 2 31 42 70 41 86 0.78 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 MobB PF03205.9 140 0.00062 12.8 0.1 1 1 2e-05 0.00087 12.3 0.1 4 32 48 76 46 78 0.90 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_47 - 883 MobB PF03205.9 140 0.0011 12.0 0.1 1 1 8.1e-05 0.0035 10.3 0.0 4 37 483 515 481 523 0.79 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 2_3 - 323 T2SE PF00437.15 272 3.5e-06 19.3 0.7 1 1 1.3e-07 1.7e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 Cytidylate_kin2 PF13189.1 179 0.0006 13.0 0.0 1 2 6.6e-05 0.0086 9.3 0.0 1 23 2 24 2 46 0.78 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 Cytidylate_kin2 PF13189.1 179 0.0006 13.0 0.0 2 2 0.015 1.9 1.6 0.0 112 135 99 122 91 136 0.77 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 Zeta_toxin PF06414.7 201 5.9e-05 15.5 0.0 1 2 9.4e-06 0.00061 12.2 0.0 19 53 3 35 1 120 0.83 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 Zeta_toxin PF06414.7 201 5.9e-05 15.5 0.0 2 2 0.048 3.1 0.1 0.0 45 74 106 133 95 150 0.73 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_41 - 79 Zeta_toxin PF06414.7 201 0.00095 11.5 0.0 1 1 1.7e-05 0.0011 11.4 0.0 21 41 49 69 31 75 0.83 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 Arch_ATPase PF01637.13 234 4.7e-05 16.4 0.2 1 1 8.6e-07 0.00011 15.2 0.2 8 135 30 142 27 164 0.68 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 AAA_16 PF13191.1 185 4.7e-11 36.3 1.2 1 1 1.4e-11 5.9e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 AAA_16 PF13191.1 185 2e-05 17.9 0.0 1 1 5.2e-07 2.2e-05 17.8 0.0 26 51 46 71 32 78 0.85 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_63 - 745 AAA_16 PF13191.1 185 0.00021 14.6 0.0 1 1 2e-05 0.00085 12.6 0.0 21 55 182 216 179 247 0.85 # 47362 # 49596 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 4_3 - 181 AAA_18 PF13238.1 129 8.8e-11 35.5 0.0 1 1 3.6e-12 1.6e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_41 - 79 AAA_18 PF13238.1 129 0.00011 15.7 0.9 1 2 0.069 3 1.5 0.0 52 90 11 44 2 49 0.58 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_41 - 79 AAA_18 PF13238.1 129 0.00011 15.7 0.9 2 2 1.5e-05 0.00063 13.3 0.3 3 22 49 68 48 77 0.80 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 AAA_18 PF13238.1 129 0.00012 15.7 0.0 1 1 5e-06 0.00022 14.8 0.0 1 23 43 90 43 138 0.67 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_12 - 402 CbiA PF01656.18 195 2.9e-18 59.2 0.0 1 1 4.6e-20 6e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 6892 # 8097 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 2_3 - 323 KaiC PF06745.8 227 0.00025 13.4 0.1 1 1 4.3e-06 0.00056 12.3 0.1 12 43 33 63 27 149 0.80 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 AAA_14 PF13173.1 128 5.3e-06 19.6 0.0 1 1 5.2e-07 2.2e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 AAA_14 PF13173.1 128 0.00014 15.1 0.1 1 2 0.089 3.9 0.7 0.0 78 104 17 42 11 49 0.75 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_41 - 79 AAA_14 PF13173.1 128 0.00014 15.1 0.1 2 2 1.6e-05 0.00069 12.8 0.0 6 28 48 70 43 76 0.85 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 4_3 - 181 AAA_14 PF13173.1 128 0.00077 12.7 0.0 1 1 3.4e-05 0.0015 11.7 0.0 4 27 2 25 1 54 0.79 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_41 - 79 AAA_29 PF13555.1 62 0.00088 12.1 0.0 1 1 8.5e-06 0.0011 11.8 0.0 14 40 34 61 31 75 0.86 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 AAA PF00004.24 132 2e-06 21.3 0.0 1 1 3.5e-08 4.6e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_63 - 745 TraG-D_C PF12696.2 128 1.2e-20 67.0 0.0 1 1 4.4e-22 5.8e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 47362 # 49596 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_12 - 402 AAA_31 PF13614.1 157 0.00059 13.1 0.1 1 2 0.071 9.2 -0.6 0.0 12 61 120 174 110 209 0.55 # 6892 # 8097 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_12 - 402 AAA_31 PF13614.1 157 0.00059 13.1 0.1 2 2 3.1e-05 0.0041 10.3 0.0 108 147 235 273 231 279 0.86 # 6892 # 8097 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_41 - 79 NTPase_1 PF03266.10 168 6.6e-05 15.9 0.1 1 1 7.8e-07 0.0001 15.3 0.1 2 27 47 72 46 76 0.87 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 4_3 - 181 AAA_33 PF13671.1 143 7.5e-11 35.4 0.0 1 1 1.5e-12 9.5e-11 35.0 0.0 2 127 3 130 2 151 0.75 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_3 - 323 AAA_33 PF13671.1 143 0.00021 14.5 0.0 1 1 7.3e-06 0.00048 13.3 0.0 1 45 42 100 42 132 0.60 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 KTI12 PF08433.5 270 0.00068 12.1 0.2 1 1 9.5e-06 0.0012 11.3 0.1 6 30 49 73 47 77 0.86 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_18 - 227 Methyltransf_26 PF13659.1 117 1.4e-10 34.5 0.0 1 2 1.4e-07 1.8e-05 18.0 0.0 60 114 10 71 3 74 0.69 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 227 Methyltransf_26 PF13659.1 117 1.4e-10 34.5 0.0 2 2 1.8e-06 0.00024 14.4 0.0 4 34 167 196 164 221 0.80 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_66 - 1753 AAA_30 PF13604.1 196 3e-44 144.2 14.8 1 3 0.057 2.5 0.9 0.0 41 86 223 269 218 282 0.84 # 50312 # 55570 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_66 - 1753 AAA_30 PF13604.1 196 3e-44 144.2 14.8 2 3 0.00037 0.016 8.0 2.2 8 147 420 551 418 564 0.80 # 50312 # 55570 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_66 - 1753 AAA_30 PF13604.1 196 3e-44 144.2 14.8 3 3 2.9e-44 1.3e-42 138.9 1.1 1 191 967 1160 967 1163 0.93 # 50312 # 55570 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 2_3 - 323 AAA_30 PF13604.1 196 0.00021 14.2 0.3 1 1 1.5e-05 0.00063 12.6 0.3 15 128 38 164 27 170 0.55 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 AAA_30 PF13604.1 196 0.0014 11.4 0.0 1 1 4.3e-05 0.0018 11.1 0.0 22 45 48 72 38 76 0.74 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_47 - 883 FtsK_SpoIIIE PF01580.13 205 3.8e-05 16.5 0.1 1 2 4.2e-06 0.00027 13.7 0.0 39 63 476 504 464 507 0.84 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_47 - 883 FtsK_SpoIIIE PF01580.13 205 3.8e-05 16.5 0.1 2 2 0.07 4.6 -0.1 0.0 76 166 531 625 529 632 0.78 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_41 - 79 FtsK_SpoIIIE PF01580.13 205 0.0012 11.6 0.0 1 1 2.1e-05 0.0014 11.4 0.0 26 65 31 71 21 74 0.82 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 ABC_tran PF00005.22 137 9.2e-06 19.3 0.1 1 1 1.4e-07 1.8e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 TIGR03263 TIGR03263 180 0.00094 11.8 0.0 1 1 1.6e-05 0.0021 10.7 0.0 3 26 2 25 1 31 0.81 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_18 - 227 Cons_hypoth95 PF03602.10 183 0.00011 14.9 0.0 1 2 0.00051 0.066 5.8 0.0 113 128 19 34 11 81 0.67 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 227 Cons_hypoth95 PF03602.10 183 0.00011 14.9 0.0 2 2 0.00021 0.027 7.1 0.0 41 61 162 182 144 213 0.83 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_66 - 1753 AAA_19 PF13245.1 76 1.5e-07 24.4 0.4 1 1 1.8e-08 5.9e-07 22.5 0.4 7 76 980 1046 973 1046 0.78 # 50312 # 55570 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_41 - 79 AAA_19 PF13245.1 76 1.5e-05 18.0 0.0 1 1 6.4e-07 2.1e-05 17.5 0.0 14 42 48 75 41 78 0.80 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 AAA_19 PF13245.1 76 8.3e-05 15.6 0.2 1 1 1.3e-05 0.00043 13.3 0.1 6 37 36 67 32 119 0.75 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 AAA_19 PF13245.1 76 0.0003 13.8 0.0 1 1 3.3e-05 0.0011 12.1 0.0 15 33 5 22 2 38 0.84 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_41 - 79 DUF463 PF04317.7 443 5.9e-05 15.0 0.0 1 1 5e-07 6.5e-05 14.8 0.0 3 30 47 74 45 78 0.89 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_47 - 883 AAA_10 PF12846.2 304 1.8e-49 162.1 0.0 1 1 9.2e-51 3e-49 161.3 0.0 1 294 479 768 479 774 0.87 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_63 - 745 AAA_10 PF12846.2 304 8.9e-07 21.8 0.0 1 1 1.4e-06 4.6e-05 16.2 0.0 4 295 188 493 186 498 0.52 # 47362 # 49596 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 2_3 - 323 AAA_10 PF12846.2 304 1.3e-06 21.3 0.1 1 2 1.7e-05 0.00054 12.7 0.0 3 34 42 73 40 106 0.73 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 AAA_10 PF12846.2 304 1.3e-06 21.3 0.1 2 2 0.0025 0.083 5.5 0.0 216 245 120 150 79 207 0.83 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 AAA_10 PF12846.2 304 0.00021 14.1 0.1 1 2 0.0099 0.32 3.6 0.0 272 286 15 33 2 37 0.74 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_41 - 79 AAA_10 PF12846.2 304 0.00021 14.1 0.1 2 2 0.00021 0.0069 9.0 0.0 2 29 45 72 44 76 0.89 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 ResIII PF04851.10 184 1.3e-05 18.4 0.2 1 2 3.4e-05 0.0022 11.1 0.3 29 101 44 110 20 121 0.72 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 ResIII PF04851.10 184 1.3e-05 18.4 0.2 2 2 0.0012 0.075 6.1 0.0 131 162 109 140 96 153 0.63 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 ResIII PF04851.10 184 0.00078 12.6 0.0 1 1 1.3e-05 0.00085 12.4 0.0 22 51 29 70 8 76 0.75 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_41 - 79 Viral_helicase1 PF01443.13 234 0.00027 13.7 0.1 1 1 3.4e-06 0.00044 13.1 0.1 3 29 49 73 47 77 0.84 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 DUF2075 PF09848.4 352 2.3e-06 20.0 0.1 1 1 5.2e-08 3.4e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 DUF2075 PF09848.4 352 7.5e-06 18.3 0.0 1 1 1.4e-07 9.1e-06 18.1 0.0 4 30 47 73 44 78 0.79 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_63 - 745 TrwB_AAD_bind PF10412.4 386 2.2e-145 477.3 0.0 1 1 8.7e-147 2.8e-145 477.0 0.0 2 386 172 561 171 561 0.99 # 47362 # 49596 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_47 - 883 TrwB_AAD_bind PF10412.4 386 7.1e-07 21.3 0.2 1 1 9.3e-08 3e-06 19.3 0.0 15 53 479 517 470 552 0.81 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 2_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 1 2 6.6e-05 0.0022 9.9 0.0 14 44 39 69 35 76 0.83 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 2 2 0.085 2.7 -0.3 0.0 234 275 115 158 112 169 0.78 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 79 TrwB_AAD_bind PF10412.4 386 0.0002 13.3 0.0 1 1 8.2e-06 0.00027 12.9 0.0 12 44 41 73 31 76 0.85 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_66 - 1753 AAA_11 PF13086.1 236 0.00026 13.9 3.5 1 1 6e-06 0.00039 13.3 0.0 2 75 968 1038 967 1058 0.81 # 50312 # 55570 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_41 - 79 AAA_11 PF13086.1 236 0.0003 13.7 0.0 1 1 4.6e-06 0.0003 13.7 0.0 15 43 43 70 13 78 0.80 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_63 - 745 T4SS-DNA_transf PF02534.9 469 6.5e-12 37.9 0.0 1 1 2e-13 1.3e-11 37.0 0.0 275 391 393 505 362 542 0.81 # 47362 # 49596 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_47 - 883 T4SS-DNA_transf PF02534.9 469 0.00025 13.0 0.0 1 2 0.0019 0.13 4.0 0.0 105 185 533 607 470 622 0.85 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_47 - 883 T4SS-DNA_transf PF02534.9 469 0.00025 13.0 0.0 2 2 0.00033 0.021 6.6 0.0 321 378 713 769 665 771 0.93 # 31632 # 34280 # 1 # ID=1_47;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_41 - 79 AAA_32 PF13654.1 509 0.001 11.0 0.0 1 1 9.2e-06 0.0012 10.8 0.0 27 58 41 72 35 77 0.87 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_18 - 227 MethyltransfD12 PF02086.10 260 0.00072 12.3 0.0 1 2 0.02 2.7 0.6 0.0 177 188 20 31 11 86 0.88 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 227 MethyltransfD12 PF02086.10 260 0.00072 12.3 0.0 2 2 3.9e-05 0.005 9.5 0.0 15 46 156 189 148 214 0.82 # 12561 # 13241 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_41 - 79 ArgK PF03308.11 267 7.9e-06 18.0 0.0 1 1 6.2e-08 8e-06 18.0 0.0 31 59 46 74 24 77 0.87 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_41 - 79 Pox_A32 PF04665.7 241 0.0002 13.9 0.0 1 1 2.9e-06 0.00038 13.1 0.0 9 40 40 71 35 74 0.88 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 PIF1 PF05970.9 364 3.7e-05 16.0 0.0 1 1 6.3e-07 8.2e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 RNA_helicase PF00910.17 107 0.00075 13.0 0.0 1 1 1.8e-05 0.0012 12.3 0.0 1 26 3 28 3 47 0.84 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_41 - 79 RNA_helicase PF00910.17 107 0.00084 12.8 0.1 1 1 2.2e-05 0.0014 12.1 0.1 3 28 49 74 47 78 0.85 # 29672 # 29908 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_3 - 323 UPF0079 PF02367.12 123 0.00015 14.7 0.0 1 1 4.3e-06 0.00028 13.8 0.0 3 45 28 70 26 114 0.84 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 UPF0079 PF02367.12 123 0.00026 13.9 0.0 1 1 6.6e-06 0.00043 13.2 0.0 17 36 2 21 1 30 0.88 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 AAA_24 PF13479.1 213 9.3e-05 15.3 0.0 1 1 1.4e-06 0.00018 14.4 0.0 6 33 3 34 1 73 0.90 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 NACHT PF05729.7 166 2e-05 17.6 0.0 1 2 1.5e-06 0.0001 15.3 0.0 2 22 2 22 1 37 0.89 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 NACHT PF05729.7 166 2e-05 17.6 0.0 2 2 0.091 5.9 -0.2 0.0 77 91 151 177 95 179 0.61 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_3 - 323 NACHT PF05729.7 166 0.00063 12.7 0.2 1 1 2.3e-05 0.0015 11.5 0.2 1 28 41 68 41 140 0.77 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 AAA_28 PF13521.1 163 0.00018 14.8 0.0 1 1 2.9e-06 0.00038 13.7 0.0 2 30 3 34 2 165 0.89 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_3 - 323 AAA_5 PF07728.9 139 0.0001 15.3 0.1 1 1 7e-06 0.00091 12.2 0.2 5 90 46 149 43 152 0.85 # 2065 # 3033 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_3 - 181 APS_kinase PF01583.15 157 1.8e-05 17.7 0.0 1 2 7.3e-06 0.00095 12.1 0.0 4 24 2 22 1 35 0.87 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 APS_kinase PF01583.15 157 1.8e-05 17.7 0.0 2 2 0.0032 0.42 3.5 0.1 34 73 107 148 95 160 0.86 # 1170 # 1712 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/98350a8d-c87f-4b6b-992c-2dbc97cabd69 # Target file: checkm_output/bins/pm396/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm396/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/98350a8d-c87f-4b6b-992c-2dbc97cabd69 checkm_output/bins/pm396/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:34 2020 # [ok]