# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_15 - 267 cobW PF02492.14 178 2.3e-05 17.4 0.0 1 1 1e-06 7.5e-05 15.7 0.0 3 50 25 70 23 91 0.81 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 cobW PF02492.14 178 0.00075 12.4 0.0 1 1 1.8e-05 0.0013 11.6 0.0 3 21 130 148 128 158 0.87 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 483 NB-ARC PF00931.17 287 1.9e-08 26.9 0.0 1 1 4.7e-10 3.5e-08 26.0 0.0 17 108 125 232 121 240 0.73 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 NB-ARC PF00931.17 287 0.00044 12.6 0.2 1 1 8.8e-06 0.00066 12.0 0.2 8 104 29 126 22 144 0.78 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_10 - 483 AAA_22 PF13401.1 131 1.1e-23 77.2 0.0 1 1 9.2e-25 4.6e-23 75.3 0.0 4 129 127 273 123 275 0.85 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 AAA_22 PF13401.1 131 1e-15 51.5 0.1 1 1 4.7e-17 2.3e-15 50.3 0.1 3 129 39 170 36 172 0.80 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_15 - 267 AAA_22 PF13401.1 131 2.5e-07 24.4 0.3 1 3 1.8e-05 0.00089 12.9 0.0 4 27 22 45 19 100 0.84 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 267 AAA_22 PF13401.1 131 2.5e-07 24.4 0.3 2 3 0.0015 0.076 6.7 0.0 74 130 143 203 115 204 0.75 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 267 AAA_22 PF13401.1 131 2.5e-07 24.4 0.3 3 3 0.00041 0.02 8.5 0.1 37 108 162 233 142 250 0.77 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 ATP_bind_1 PF03029.12 238 2.2e-05 17.5 0.0 1 1 2.7e-07 4e-05 16.7 0.0 1 23 132 154 132 160 0.90 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 PRK PF00485.13 194 0.00039 13.5 0.2 1 1 6.4e-06 0.00096 12.2 0.0 1 33 42 76 42 124 0.72 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_19 - 476 DNA_methylase PF00145.12 335 4.8e-76 249.4 0.0 1 1 4.2e-78 6.3e-76 249.0 0.0 1 333 92 455 92 457 0.87 # 15866 # 17293 # -1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 4_2 - 323 SRP54 PF00448.17 196 0.00058 12.8 0.0 1 1 6.8e-06 0.001 12.0 0.0 3 33 42 72 40 118 0.91 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_6 - 609 AAA_15 PF13175.1 415 7.1e-36 117.5 0.0 1 2 3.5e-15 2.6e-13 43.2 0.1 1 56 3 58 3 134 0.89 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 3_6 - 609 AAA_15 PF13175.1 415 7.1e-36 117.5 0.0 2 2 4.8e-24 3.5e-22 72.4 0.0 240 415 217 376 196 376 0.89 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_15 - 267 AAA_15 PF13175.1 415 8.1e-06 18.5 0.0 1 2 0.0001 0.0076 8.7 0.0 10 43 10 51 7 85 0.77 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 267 AAA_15 PF13175.1 415 8.1e-06 18.5 0.0 2 2 0.00018 0.014 7.9 0.0 372 410 158 196 143 198 0.91 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 AAA_17 PF13207.1 121 5.7e-06 20.7 0.0 1 1 3.8e-07 2.9e-05 18.4 0.0 2 26 130 152 129 259 0.71 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 AAA_17 PF13207.1 121 0.00042 14.6 0.0 1 1 1.3e-05 0.00098 13.4 0.0 1 32 42 80 42 187 0.68 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_6 - 609 AAA_21 PF13304.1 303 1.7e-16 54.4 0.0 1 1 1.3e-17 9.8e-16 51.9 0.0 1 300 26 374 26 376 0.85 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_15 - 267 AAA_21 PF13304.1 303 2.6e-11 37.5 0.0 1 2 2.5e-06 0.00019 14.9 0.0 1 24 24 47 24 80 0.78 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 267 AAA_21 PF13304.1 303 2.6e-11 37.5 0.0 2 2 4.8e-08 3.6e-06 20.6 0.0 235 297 136 196 126 201 0.87 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 Miro PF08477.8 119 0.00021 15.3 0.0 1 1 4.5e-06 0.00067 13.6 0.0 2 25 130 152 129 195 0.83 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 483 MobB PF03205.9 140 0.0001 15.5 0.0 1 1 2.7e-06 0.0002 14.5 0.0 3 22 130 149 128 161 0.90 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 MobB PF03205.9 140 0.0006 13.0 0.1 1 1 2.6e-05 0.0019 11.3 0.0 2 31 42 70 41 86 0.78 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_15 - 267 Arf PF00025.16 175 0.0012 11.5 0.0 1 1 1.4e-05 0.0021 10.7 0.0 17 36 25 44 14 56 0.81 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 4_2 - 323 T2SE PF00437.15 272 3.9e-06 19.4 0.2 1 1 6.2e-08 9.3e-06 18.1 0.2 110 161 22 72 5 124 0.87 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_15 - 267 G-alpha PF00503.15 389 0.0012 11.0 0.0 1 1 8.2e-06 0.0012 11.0 0.0 62 99 26 79 20 220 0.82 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_18 - 337 Shikimate_DH PF01488.15 135 0.00049 13.7 0.4 1 1 2.5e-05 0.0038 10.8 0.4 10 93 143 221 139 235 0.73 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 3_10 - 483 Zeta_toxin PF06414.7 201 0.00068 12.2 0.0 1 2 3.1e-05 0.0046 9.5 0.0 18 60 129 167 122 195 0.81 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 483 Zeta_toxin PF06414.7 201 0.00068 12.2 0.0 2 2 0.027 4 -0.1 0.0 157 198 424 467 419 470 0.81 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 2_18 - 337 F420_oxidored PF03807.12 96 1.5e-06 22.0 0.0 1 1 2.3e-08 3.4e-06 20.9 0.0 1 70 147 209 147 233 0.88 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 3_6 - 609 SMC_N PF02463.14 220 2.5e-08 26.9 0.1 1 1 6.5e-10 4.8e-08 25.9 0.1 2 49 3 49 2 63 0.86 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_15 - 267 SMC_N PF02463.14 220 6.6e-07 22.2 0.0 1 1 2.5e-08 1.9e-06 20.7 0.0 18 212 15 212 9 217 0.68 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 Arch_ATPase PF01637.13 234 2.3e-07 24.2 0.0 1 1 5.9e-09 4.4e-07 23.3 0.0 20 163 127 267 120 292 0.76 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 Arch_ATPase PF01637.13 234 0.00011 15.3 0.1 1 1 3.7e-06 0.00028 14.1 0.1 8 135 30 142 27 164 0.66 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 AAA_16 PF13191.1 185 1.5e-10 34.8 0.6 1 1 3.8e-11 1.9e-09 31.2 0.1 20 179 36 153 19 162 0.76 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_10 - 483 AAA_16 PF13191.1 185 6.8e-08 26.1 0.0 1 1 8.2e-09 4.1e-07 23.6 0.0 23 175 126 257 119 266 0.62 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 2_15 - 267 AAA_16 PF13191.1 185 9.7e-08 25.6 3.2 1 1 9.1e-09 4.5e-07 23.5 3.2 24 148 22 186 12 225 0.67 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_6 - 609 AAA_23 PF13476.1 202 3.2e-13 43.9 1.4 1 1 8.4e-15 6.2e-13 43.0 1.4 1 179 5 252 5 278 0.55 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_15 - 267 AAA_23 PF13476.1 202 1.1e-05 19.4 0.0 1 1 2e-07 1.5e-05 18.9 0.0 6 42 8 45 7 86 0.87 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 AAA_18 PF13238.1 129 1.1e-05 19.3 0.2 1 1 6.4e-07 4.8e-05 17.2 0.0 1 66 130 198 130 260 0.72 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 AAA_18 PF13238.1 129 0.00015 15.6 0.0 1 1 3.7e-06 0.00027 14.7 0.0 1 23 43 90 43 136 0.68 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_15 - 267 AAA_13 PF13166.1 712 0.00045 12.2 0.0 1 2 0.001 0.15 3.8 0.0 16 53 22 58 9 87 0.72 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 267 AAA_13 PF13166.1 712 0.00045 12.2 0.0 2 2 0.00017 0.025 6.4 0.0 526 578 154 205 148 218 0.84 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 KaiC PF06745.8 227 3.4e-05 16.5 0.4 1 1 1.2e-06 8.9e-05 15.1 0.1 18 169 126 278 116 302 0.82 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 KaiC PF06745.8 227 0.00027 13.5 0.1 1 1 6.6e-06 0.00049 12.7 0.1 12 54 33 72 26 153 0.82 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_10 - 483 AAA_14 PF13173.1 128 5.1e-06 19.9 0.0 1 1 9.3e-07 6.9e-05 16.2 0.0 4 98 129 269 126 287 0.68 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 AAA_14 PF13173.1 128 1.4e-05 18.5 0.0 1 1 7.6e-07 5.7e-05 16.5 0.0 2 96 40 164 39 193 0.61 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_15 - 267 AAA_29 PF13555.1 62 1.5e-06 21.2 0.1 1 1 6.7e-08 3.3e-06 20.1 0.1 17 51 17 50 11 55 0.83 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_6 - 609 AAA_29 PF13555.1 62 2.8e-06 20.3 0.0 1 1 1.2e-07 5.8e-06 19.3 0.0 1 46 3 47 3 59 0.87 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 3_10 - 483 AAA_29 PF13555.1 62 0.00024 14.1 0.1 1 1 1.2e-05 0.00058 12.9 0.1 21 40 125 144 117 148 0.83 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 AAA PF00004.24 132 2.7e-06 21.1 0.0 1 1 8.6e-08 6.4e-06 19.9 0.0 3 97 45 152 43 181 0.68 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_10 - 483 AAA PF00004.24 132 4.9e-06 20.2 0.1 1 1 4.3e-07 3.2e-05 17.6 0.1 3 111 132 269 130 288 0.58 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 483 MMR_HSR1 PF01926.18 116 0.00052 13.4 0.0 1 1 3.7e-05 0.0028 11.1 0.0 2 91 130 236 129 278 0.67 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 2_15 - 267 MMR_HSR1 PF01926.18 116 0.00072 13.0 0.4 1 1 1.5e-05 0.0011 12.4 0.4 3 21 26 44 24 203 0.84 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 267 DUF258 PF03193.11 161 1.1e-06 21.3 0.1 1 1 2.4e-08 1.8e-06 20.7 0.1 34 73 21 59 10 78 0.82 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 DUF258 PF03193.11 161 0.0006 12.5 0.0 1 1 1.6e-05 0.0012 11.6 0.0 34 61 126 153 105 170 0.85 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 2_18 - 337 NAD_binding_2 PF03446.10 163 5.5e-07 23.0 0.1 1 1 7.8e-09 1.2e-06 22.0 0.0 3 93 147 235 145 256 0.85 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 3_10 - 483 NTPase_1 PF03266.10 168 0.0012 12.0 0.2 1 1 2.8e-05 0.0042 10.3 0.1 2 22 130 150 129 163 0.89 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 2_15 - 267 AAA_33 PF13671.1 143 4.5e-05 16.8 0.1 1 1 1.9e-06 9.7e-05 15.7 0.1 2 31 25 57 24 108 0.64 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 AAA_33 PF13671.1 143 7.3e-05 16.1 0.0 1 1 3.2e-06 0.00016 15.0 0.0 4 23 132 151 130 226 0.86 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 AAA_33 PF13671.1 143 0.00028 14.2 0.0 1 1 1.3e-05 0.00063 13.1 0.0 1 39 42 94 42 131 0.62 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 337 2-Hacid_dh_C PF02826.14 178 1.4e-50 164.3 0.0 1 1 1.3e-52 2e-50 163.9 0.0 1 178 109 294 109 294 0.94 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 2_15 - 267 AAA_30 PF13604.1 196 6.6e-05 16.0 0.0 1 1 2.5e-06 0.00012 15.1 0.0 17 50 21 54 15 82 0.87 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 4_2 - 323 AAA_30 PF13604.1 196 0.00027 14.0 0.2 1 1 1.5e-05 0.00077 12.5 0.2 16 120 39 154 31 170 0.51 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_10 - 483 AAA_30 PF13604.1 196 0.00092 12.3 0.0 1 1 4.2e-05 0.0021 11.1 0.0 16 44 125 153 121 304 0.72 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 2_18 - 337 ApbA PF02558.11 151 0.0012 11.7 0.1 1 1 1.4e-05 0.0021 11.0 0.1 1 36 148 184 148 207 0.80 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 3_6 - 609 DUF2813 PF11398.3 373 1.6e-09 30.7 0.5 1 2 1.4e-07 2.1e-05 17.2 0.0 1 49 1 51 1 67 0.87 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 3_6 - 609 DUF2813 PF11398.3 373 1.6e-09 30.7 0.5 2 2 7.7e-06 0.0012 11.4 0.1 267 341 312 391 193 407 0.80 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_15 - 267 ABC_tran PF00005.22 137 1.3e-31 103.2 0.0 1 1 4.7e-33 1.8e-31 102.8 0.0 1 137 12 166 12 166 0.85 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 4_2 - 323 ABC_tran PF00005.22 137 1.1e-05 19.3 0.1 1 1 5.6e-07 2.1e-05 18.3 0.1 2 83 31 113 30 157 0.73 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_6 - 609 ABC_tran PF00005.22 137 3.6e-05 17.5 0.0 1 1 7.2e-06 0.00027 14.7 0.0 11 50 24 61 15 136 0.82 # 3689 # 5515 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 3_10 - 483 ABC_tran PF00005.22 137 0.0002 15.2 0.0 1 1 1.6e-05 0.00058 13.6 0.0 10 32 126 148 123 162 0.86 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 483 DAP3 PF10236.4 309 0.00044 12.7 0.1 1 2 0.0013 0.19 4.0 0.0 20 44 124 148 118 150 0.88 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 483 DAP3 PF10236.4 309 0.00044 12.7 0.1 2 2 0.00035 0.052 5.9 0.0 259 304 293 339 267 343 0.81 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 AAA_19 PF13245.1 76 0.00015 15.0 0.1 1 1 5.6e-06 0.00083 12.6 0.1 6 37 36 66 32 119 0.74 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 AAA_10 PF12846.2 304 3.5e-06 20.1 0.1 1 3 1.8e-05 0.0013 11.6 0.0 3 34 42 73 40 110 0.74 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 AAA_10 PF12846.2 304 3.5e-06 20.1 0.1 2 3 0.0019 0.14 4.9 0.0 217 244 121 149 85 163 0.80 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 AAA_10 PF12846.2 304 3.5e-06 20.1 0.1 3 3 0.075 5.6 -0.3 0.0 106 170 239 301 182 315 0.58 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_15 - 267 AAA_10 PF12846.2 304 0.00076 12.4 1.0 1 1 4.6e-05 0.0034 10.2 0.3 4 22 25 43 22 55 0.84 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 267 SbcCD_C PF13558.1 90 4e-05 17.0 0.0 1 1 3.8e-06 0.00056 13.3 0.0 8 90 113 182 109 182 0.75 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 2_18 - 337 ThiF PF00899.16 136 0.00023 14.5 1.6 1 1 4.3e-06 0.00064 13.0 1.2 3 26 146 169 144 203 0.92 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 4_2 - 323 ResIII PF04851.10 184 1.4e-05 18.4 0.1 1 2 1.4e-05 0.0021 11.3 0.1 26 93 41 102 16 123 0.67 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 ResIII PF04851.10 184 1.4e-05 18.4 0.1 2 2 0.00066 0.098 5.9 0.0 138 162 116 140 87 162 0.67 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_14 - 273 ThiS-like PF14453.1 57 0.0012 12.2 0.0 1 1 1.7e-05 0.0025 11.2 0.0 25 54 165 194 146 196 0.94 # 11996 # 12814 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 4_2 - 323 DUF2075 PF09848.4 352 2.8e-06 20.0 0.1 1 1 5.5e-08 4.1e-06 19.4 0.1 2 97 41 138 40 165 0.71 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_10 - 483 DUF2075 PF09848.4 352 0.00015 14.2 0.1 1 2 0.012 0.88 1.8 0.0 3 25 129 151 127 175 0.82 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 483 DUF2075 PF09848.4 352 0.00015 14.2 0.1 2 2 3.6e-05 0.0027 10.1 0.0 109 169 215 285 192 300 0.80 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 DUF853 PF05872.7 504 0.00026 12.9 0.0 1 2 7.8e-06 0.0012 10.7 0.0 7 48 23 67 17 84 0.78 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 DUF853 PF05872.7 504 0.00026 12.9 0.0 2 2 0.019 2.8 -0.4 0.0 254 275 121 142 113 161 0.69 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_14 - 273 Methyltransf_27 PF13708.1 194 2.6e-47 154.3 0.0 1 1 2.1e-49 3.2e-47 154.0 0.0 3 194 72 266 70 266 0.95 # 11996 # 12814 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 4_2 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.8 0.6 1 3 1.2e-05 0.0017 10.4 0.1 14 44 39 69 35 77 0.84 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.8 0.6 2 3 0.021 3.1 -0.3 0.0 234 275 115 158 112 169 0.78 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.8 0.6 3 3 0.037 5.5 -1.1 0.0 128 182 251 306 240 311 0.71 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 ArgK PF03308.11 267 0.00041 12.6 0.1 1 2 1.1e-05 0.0016 10.7 0.0 13 61 24 72 12 88 0.82 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 ArgK PF03308.11 267 0.00041 12.6 0.1 2 2 0.044 6.6 -1.2 0.0 51 84 116 149 109 156 0.81 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 323 PIF1 PF05970.9 364 3.7e-05 16.2 0.0 1 1 5.5e-07 8.3e-05 15.1 0.0 7 127 27 149 23 167 0.67 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 3_10 - 483 RNA_helicase PF00910.17 107 0.00051 13.7 0.0 1 1 8.5e-06 0.0013 12.4 0.0 1 61 130 190 130 226 0.86 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 UPF0079 PF02367.12 123 0.00014 15.0 0.0 1 1 1.8e-06 0.00027 14.1 0.0 3 45 28 70 26 105 0.87 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 337 TrkA_N PF02254.13 116 0.00069 13.1 0.2 1 2 0.082 12 -0.6 0.0 57 72 40 55 5 60 0.82 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 2_18 - 337 TrkA_N PF02254.13 116 0.00069 13.1 0.2 2 2 5.5e-05 0.0081 9.7 0.0 2 27 149 172 148 223 0.72 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 2_18 - 337 IlvN PF07991.7 165 4.5e-06 19.6 0.0 1 2 0.0093 1.4 1.7 0.0 49 73 34 58 14 66 0.77 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 2_18 - 337 IlvN PF07991.7 165 4.5e-06 19.6 0.0 2 2 5.3e-07 7.9e-05 15.5 0.0 2 68 143 208 142 236 0.80 # 17056 # 18066 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.573 3_10 - 483 NACHT PF05729.7 166 0.0001 15.5 0.0 1 1 2.4e-06 0.00018 14.7 0.0 2 94 129 238 128 259 0.79 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 4_2 - 323 NACHT PF05729.7 166 0.00071 12.7 0.2 1 1 2.1e-05 0.0016 11.6 0.1 1 28 41 68 41 140 0.78 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 2_15 - 267 AAA_25 PF13481.1 194 0.00018 14.4 0.0 1 1 1.1e-05 0.00081 12.3 0.0 31 53 20 42 14 103 0.90 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 3_10 - 483 AAA_25 PF13481.1 194 0.00054 12.8 0.1 1 1 7.8e-05 0.0058 9.5 0.1 35 186 129 266 123 269 0.71 # 9276 # 10724 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 2_15 - 267 AAA_28 PF13521.1 163 0.00076 12.9 0.1 1 1 9.8e-06 0.0015 12.0 0.1 3 58 26 81 24 99 0.63 # 14545 # 15345 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.553 4_2 - 323 AAA_5 PF07728.9 139 0.00015 15.0 0.1 1 1 6.6e-06 0.00098 12.3 0.2 5 90 46 149 43 158 0.87 # 1025 # 1993 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/005327c8-5bc3-41bf-8bb6-5f822250209b # Target file: checkm_output/bins/pm382/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm382/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/005327c8-5bc3-41bf-8bb6-5f822250209b checkm_output/bins/pm382/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:27 2020 # [ok]