# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 343 Mg_chelatase PF01078.16 207 6.3e-06 17.5 0.1 1 2 4.7e-07 2.5e-05 15.5 0.0 13 56 158 201 147 252 0.83 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 Mg_chelatase PF01078.16 207 6.3e-06 17.5 0.1 2 2 0.057 3 -1.1 0.0 169 200 290 321 278 325 0.80 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_25 - 220 cobW PF02492.14 178 0.00024 12.6 0.0 1 2 2.5e-05 0.0013 10.2 0.0 54 101 25 97 4 114 0.70 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_25 - 220 cobW PF02492.14 178 0.00024 12.6 0.0 2 2 0.074 3.9 -1.1 0.0 145 167 142 164 127 171 0.76 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_25 - 220 MipZ PF09140.6 261 4.9e-13 40.7 0.1 1 1 3.4e-12 1.8e-10 32.3 0.1 2 140 4 123 3 189 0.78 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_25 - 220 YhjQ PF06564.7 244 0.00038 11.8 0.0 1 2 0.00081 0.043 5.1 0.0 3 31 4 32 2 41 0.85 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_25 - 220 YhjQ PF06564.7 244 0.00038 11.8 0.0 2 2 0.0011 0.059 4.7 0.0 106 151 71 114 52 125 0.81 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_53 - 613 AAA_22 PF13401.1 131 0.00047 12.3 0.0 1 1 2.1e-05 0.0011 11.1 0.0 8 37 538 573 535 603 0.77 # 33452 # 35290 # 1 # ID=1_53;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 343 ATP_bind_1 PF03029.12 238 3.2e-05 15.6 0.0 1 1 1.1e-06 5.6e-05 14.7 0.0 2 25 173 196 172 205 0.87 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_25 - 220 SRP54 PF00448.17 196 0.0002 12.8 0.1 1 1 9.1e-06 0.00048 11.6 0.1 3 94 4 91 2 95 0.79 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 343 AAA_17 PF13207.1 121 0.00019 14.3 0.3 1 1 1.7e-05 0.00092 12.1 0.1 2 19 170 187 169 220 0.80 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_53 - 613 Miro PF08477.8 119 0.00029 13.4 0.0 1 1 1.7e-05 0.00092 11.8 0.0 4 51 539 585 536 605 0.75 # 33452 # 35290 # 1 # ID=1_53;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 343 MobB PF03205.9 140 8e-05 14.4 0.1 1 1 1.6e-05 0.00041 12.1 0.0 2 24 169 191 168 205 0.83 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_25 - 220 MobB PF03205.9 140 0.00037 12.2 0.5 1 1 2.5e-05 0.00066 11.4 0.5 1 44 3 45 3 51 0.88 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_25 - 220 ArsA_ATPase PF02374.10 305 2.8e-07 21.8 0.8 1 1 7e-09 3.7e-07 21.4 0.5 2 49 3 51 2 70 0.88 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 343 T2SE PF00437.15 272 6.7e-64 207.3 0.0 1 1 1.4e-65 7.7e-64 207.1 0.0 3 270 20 322 18 324 0.96 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 Zeta_toxin PF06414.7 201 0.00023 12.3 0.0 1 1 7.4e-06 0.00039 11.5 0.0 17 60 168 214 157 244 0.82 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_25 - 220 VirC1 PF07015.6 231 4.5e-09 27.7 0.0 1 1 1.5e-10 7.9e-09 26.9 0.0 2 96 3 93 2 108 0.83 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 343 AAA_16 PF13191.1 185 0.00019 13.4 0.0 1 2 5.9e-05 0.0031 9.5 0.0 21 51 166 194 150 239 0.83 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 AAA_16 PF13191.1 185 0.00019 13.4 0.0 2 2 0.015 0.8 1.6 0.0 33 81 265 316 264 338 0.77 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_25 - 220 CbiA PF01656.18 195 3.6e-19 60.9 0.0 1 1 9.1e-21 4.8e-19 60.5 0.0 1 184 5 172 5 186 0.80 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 343 AAA_14 PF13173.1 128 0.00035 12.5 0.0 1 1 1.3e-05 0.00071 11.5 0.0 2 47 167 210 166 261 0.81 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 AAA_29 PF13555.1 62 7.7e-05 14.3 0.1 1 1 3.9e-06 0.00021 12.9 0.1 22 41 166 185 158 191 0.84 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 621 TraG-D_C PF12696.2 128 3.9e-25 80.2 0.0 1 1 2.5e-26 6.7e-25 79.5 0.0 2 127 422 541 421 542 0.91 # 6954 # 8816 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_1 - 300 TraG-D_C PF12696.2 128 0.00015 13.7 0.0 1 1 9.9e-06 0.00026 12.9 0.0 1 75 136 211 136 215 0.85 # 3 # 902 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_25 - 220 AAA_31 PF13614.1 157 3.7e-07 22.2 0.0 1 2 2.7e-05 0.0014 10.5 0.0 1 59 3 61 3 68 0.84 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_25 - 220 AAA_31 PF13614.1 157 3.7e-07 22.2 0.0 2 2 5.3e-05 0.0028 9.6 0.0 110 146 73 108 67 114 0.79 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 343 AAA_30 PF13604.1 196 0.00059 11.4 0.4 1 1 3e-05 0.0016 10.1 0.1 10 41 159 190 152 200 0.76 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 FtsK_SpoIIIE PF01580.13 205 2.3e-06 19.2 0.0 1 1 3.4e-07 9e-06 17.3 0.0 7 59 135 188 130 194 0.77 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_53 - 613 FtsK_SpoIIIE PF01580.13 205 4.4e-06 18.3 0.0 1 1 2.8e-07 7.5e-06 17.5 0.0 36 70 532 566 521 568 0.90 # 33452 # 35290 # 1 # ID=1_53;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 343 ABC_tran PF00005.22 137 4.8e-06 19.0 0.0 1 1 1.8e-07 9.6e-06 18.0 0.0 5 45 161 201 158 223 0.83 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_1 - 300 AAA_10 PF12846.2 304 8.9e-22 69.8 0.0 1 1 6.4e-23 1.1e-21 69.5 0.0 78 303 3 218 1 219 0.85 # 3 # 902 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_53 - 613 AAA_10 PF12846.2 304 1.6e-07 23.0 0.0 1 1 1.5e-08 2.7e-07 22.3 0.0 3 66 536 612 534 613 0.92 # 33452 # 35290 # 1 # ID=1_53;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 343 AAA_10 PF12846.2 304 0.00023 12.6 0.0 1 2 0.084 1.5 0.1 0.0 112 154 114 153 55 166 0.72 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 AAA_10 PF12846.2 304 0.00023 12.6 0.0 2 2 7.9e-05 0.0014 10.1 0.0 4 23 170 189 167 204 0.85 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 ResIII PF04851.10 184 0.00028 12.8 0.0 1 1 8.7e-06 0.00046 12.0 0.0 24 46 166 188 127 217 0.77 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 Viral_helicase1 PF01443.13 234 0.00034 12.1 0.0 1 1 1.4e-05 0.00074 11.0 0.0 1 25 170 193 170 223 0.78 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 621 TrwB_AAD_bind PF10412.4 386 1.4e-17 55.3 0.0 1 1 9e-19 2.4e-17 54.6 0.0 165 380 337 555 320 557 0.81 # 6954 # 8816 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 TrwB_AAD_bind PF10412.4 386 8.5e-05 13.2 0.0 1 1 5.3e-06 0.00014 12.5 0.0 16 40 168 192 160 214 0.85 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 621 T4SS-DNA_transf PF02534.9 469 5.8e-96 313.8 0.0 1 1 1.5e-97 7.9e-96 313.3 0.0 45 452 147 568 101 589 0.87 # 6954 # 8816 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 Pox_A32 PF04665.7 241 3.4e-05 15.2 0.0 1 1 1e-06 5.4e-05 14.6 0.0 16 67 170 218 161 247 0.73 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_8 - 343 UPF0079 PF02367.12 123 0.00012 13.8 0.1 1 1 3.8e-06 0.0002 13.0 0.1 10 37 162 189 153 199 0.82 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_53 - 613 NACHT PF05729.7 166 0.00018 13.2 0.0 1 1 1.4e-05 0.00038 12.1 0.0 5 29 539 563 537 568 0.85 # 33452 # 35290 # 1 # ID=1_53;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 343 NACHT PF05729.7 166 0.00024 12.8 0.0 1 1 2.2e-05 0.00059 11.5 0.0 2 22 169 189 168 195 0.91 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_25 - 220 AAA_25 PF13481.1 194 5.2e-05 14.7 0.0 1 1 2.6e-06 6.9e-05 14.3 0.0 34 62 3 33 1 94 0.82 # 18690 # 19349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 343 AAA_25 PF13481.1 194 0.0002 12.8 0.1 1 1 1.6e-05 0.00042 11.7 0.1 31 54 165 188 158 199 0.90 # 5939 # 6967 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/43d0060b-64e1-4c66-a222-7a4eacaac883 # Target file: checkm_output/bins/pm381/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm381/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/43d0060b-64e1-4c66-a222-7a4eacaac883 checkm_output/bins/pm381/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:25 2020 # [ok]