# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 346 Mg_chelatase PF01078.16 207 3.5e-06 17.8 0.0 1 1 1.6e-07 6e-06 17.0 0.0 4 56 149 201 146 218 0.82 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 cobW PF02492.14 178 9e-06 16.7 0.0 1 2 0.059 2.2 -0.8 0.0 69 96 116 141 112 162 0.81 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 cobW PF02492.14 178 9e-06 16.7 0.0 2 2 1.1e-06 4.1e-05 14.6 0.0 3 35 170 202 168 209 0.89 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 IstB_IS21 PF01695.12 178 0.00011 13.2 0.0 1 1 9.6e-06 0.00018 12.5 0.0 21 67 142 187 129 207 0.83 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 IstB_IS21 PF01695.12 178 0.0002 12.3 0.0 1 1 1.6e-05 0.0003 11.7 0.0 56 85 11 40 2 70 0.84 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_9 - 251 MipZ PF09140.6 261 2.8e-16 50.8 0.1 1 1 1.3e-17 5e-16 50.0 0.1 2 129 3 140 2 162 0.71 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_9 - 251 YhjQ PF06564.7 244 1.5e-08 25.8 0.1 1 1 2e-09 7.5e-08 23.4 0.1 1 42 1 42 1 146 0.60 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 DUF87 PF01935.12 229 9.3e-05 13.8 0.0 1 1 5.2e-06 0.00019 12.7 0.0 28 46 172 190 166 200 0.87 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 Septin PF00735.13 281 0.00013 12.6 0.0 1 1 5.2e-06 0.00019 11.9 0.0 6 28 169 191 165 216 0.79 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 AAA_22 PF13401.1 131 3.1e-06 18.9 0.0 1 1 4.8e-07 5.9e-06 18.0 0.0 3 32 166 195 164 319 0.80 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 AAA_22 PF13401.1 131 7.5e-05 14.4 0.0 1 1 1.9e-05 0.00024 12.8 0.0 14 57 12 50 10 73 0.86 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_28 - 817 AAA_22 PF13401.1 131 0.00012 13.8 0.2 1 1 0.00011 0.0014 10.3 0.0 6 29 465 488 459 551 0.72 # 19778 # 22228 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 346 ATP_bind_1 PF03029.12 238 1e-05 16.7 0.0 1 1 8.4e-07 1.6e-05 16.0 0.0 1 33 172 204 172 212 0.92 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 ATP_bind_1 PF03029.12 238 3.4e-05 14.9 0.0 1 1 4.4e-06 8.1e-05 13.7 0.0 6 99 12 118 10 121 0.68 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 AAA_17 PF13207.1 121 1.1e-05 17.7 0.1 1 1 7.9e-07 2.9e-05 16.4 0.0 2 19 170 187 169 237 0.86 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 Miro PF08477.8 119 0.00018 13.6 0.0 1 1 9.7e-06 0.00036 12.6 0.0 2 25 170 193 169 247 0.70 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 MobB PF03205.9 140 9.3e-05 13.7 0.0 1 1 9.6e-06 0.00018 12.8 0.0 3 25 170 192 168 205 0.77 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 MobB PF03205.9 140 9.4e-05 13.7 0.0 1 1 1.5e-05 0.00027 12.2 0.0 10 44 12 44 3 72 0.79 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_9 - 251 ArsA_ATPase PF02374.10 305 1.3e-12 38.8 2.0 1 2 6.5e-12 2.4e-10 31.4 0.3 2 90 2 103 1 108 0.81 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_9 - 251 ArsA_ATPase PF02374.10 305 1.3e-12 38.8 2.0 2 2 0.00013 0.0049 7.3 0.2 116 143 97 125 91 201 0.72 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 T2SE PF00437.15 272 2.2e-70 228.1 0.0 1 1 6.8e-72 2.5e-70 227.9 0.0 4 269 20 321 17 324 0.97 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 Zeta_toxin PF06414.7 201 1.2e-05 16.0 0.0 1 1 5.2e-07 1.9e-05 15.3 0.0 14 56 165 209 152 240 0.79 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 SMC_N PF02463.14 220 0.00022 12.0 0.0 1 1 9.1e-06 0.00034 11.4 0.0 5 46 148 189 146 217 0.76 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 VirC1 PF07015.6 231 6.4e-06 16.8 0.0 1 1 4.5e-07 1.7e-05 15.5 0.0 1 51 1 51 1 60 0.86 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_9 - 251 Fer4_NifH PF00142.13 273 4.9e-07 20.6 0.0 1 1 2.3e-08 8.4e-07 19.9 0.0 8 46 10 48 3 64 0.90 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 AAA_16 PF13191.1 185 6.1e-07 21.1 0.0 1 1 2.4e-08 8.9e-07 20.5 0.0 12 81 156 233 144 313 0.77 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 AAA_23 PF13476.1 202 1.2e-06 20.5 0.0 1 1 5.8e-08 2.1e-06 19.6 0.0 2 39 148 187 148 192 0.89 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 AAA_18 PF13238.1 129 1.1e-05 17.3 0.0 1 1 5.2e-07 1.9e-05 16.5 0.0 1 39 170 212 170 263 0.76 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 CbiA PF01656.18 195 1.2e-39 127.3 0.0 1 1 3.9e-41 1.4e-39 127.0 0.0 1 174 4 193 4 214 0.79 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 Polysacc_synt_2 PF02719.10 294 2.2e-05 14.9 0.0 1 1 1.5e-06 5.6e-05 13.6 0.0 1 84 170 250 170 253 0.80 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 KaiC PF06745.8 227 0.00024 11.7 0.1 1 1 2.2e-05 0.0008 10.0 0.0 10 36 158 184 153 202 0.85 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 AAA_14 PF13173.1 128 2.6e-05 15.7 0.0 1 1 1.3e-06 4.8e-05 14.8 0.0 2 45 167 211 166 265 0.80 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 AAA_29 PF13555.1 62 4.6e-06 17.7 0.0 1 1 4.4e-07 8.2e-06 16.9 0.0 5 44 149 188 146 197 0.79 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_28 - 817 AAA_29 PF13555.1 62 6.3e-05 14.0 0.2 1 1 8.3e-06 0.00015 12.8 0.2 21 38 462 478 451 493 0.79 # 19778 # 22228 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 346 Sigma54_activat PF00158.21 168 0.00023 12.2 0.0 1 1 1.2e-05 0.00043 11.3 0.0 10 51 155 196 148 207 0.78 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_19 - 643 TraG-D_C PF12696.2 128 1.2e-33 107.2 0.0 1 1 5.5e-35 2e-33 106.5 0.0 1 127 395 514 395 515 0.90 # 11801 # 13729 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.446 1_9 - 251 AAA_31 PF13614.1 157 8.6e-12 36.8 0.0 1 2 1.1e-11 4.2e-10 31.3 0.0 2 45 3 46 2 81 0.91 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_9 - 251 AAA_31 PF13614.1 157 8.6e-12 36.8 0.0 2 2 0.0041 0.15 3.5 0.0 110 148 102 139 87 156 0.74 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 AAA_33 PF13671.1 143 4.8e-05 14.8 0.0 1 1 2.5e-06 9.2e-05 13.9 0.0 2 22 170 190 170 244 0.82 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 AAA_30 PF13604.1 196 7.4e-05 13.9 0.1 1 1 5.9e-06 0.00011 13.3 0.1 26 79 10 65 2 91 0.82 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 AAA_30 PF13604.1 196 0.00012 13.2 0.0 1 1 1.1e-05 0.00021 12.4 0.0 13 45 162 194 155 204 0.82 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 FtsK_SpoIIIE PF01580.13 205 1.4e-07 22.6 0.0 1 1 1.3e-08 2.4e-07 21.9 0.0 29 60 158 189 141 192 0.86 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_28 - 817 FtsK_SpoIIIE PF01580.13 205 0.00012 13.1 0.0 1 1 1.5e-05 0.00029 11.8 0.0 35 59 458 484 435 497 0.72 # 19778 # 22228 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 346 ABC_tran PF00005.22 137 3.2e-07 22.2 0.0 1 1 1.5e-08 5.5e-07 21.5 0.0 4 51 160 207 158 310 0.86 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_28 - 817 AAA_10 PF12846.2 304 3.7e-37 119.8 0.0 1 1 4.5e-38 5.5e-37 119.2 0.0 2 303 464 739 463 740 0.89 # 19778 # 22228 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 346 AAA_10 PF12846.2 304 2.9e-05 15.1 0.0 1 1 3.7e-06 4.5e-05 14.4 0.0 2 23 168 189 167 230 0.91 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 AAA_10 PF12846.2 304 7e-05 13.8 0.0 1 1 6.2e-06 7.6e-05 13.7 0.0 11 60 12 75 10 197 0.84 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_28 - 817 RNA_pol_Rpb2_3 PF04565.11 68 0.0002 12.7 0.0 1 1 1.4e-05 0.00052 11.3 0.0 29 61 230 263 225 266 0.89 # 19778 # 22228 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 346 ResIII PF04851.10 184 7.8e-05 14.1 0.0 1 1 3.4e-06 0.00013 13.4 0.0 22 47 159 188 138 221 0.73 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 Viral_helicase1 PF01443.13 234 3.4e-05 14.9 0.0 1 1 1.7e-06 6.4e-05 14.0 0.0 1 22 170 191 170 218 0.77 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 DEAD PF00270.24 169 8.8e-06 16.8 0.0 1 1 5.1e-07 1.9e-05 15.7 0.0 11 67 163 218 156 249 0.75 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_19 - 643 TrwB_AAD_bind PF10412.4 386 1.2e-32 104.4 0.0 1 1 1.6e-33 1.9e-32 103.7 0.0 15 376 139 524 135 533 0.79 # 11801 # 13729 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.446 1_28 - 817 TrwB_AAD_bind PF10412.4 386 1.8e-07 21.5 0.1 1 2 9.6e-06 0.00012 12.2 0.0 16 51 464 499 452 505 0.89 # 19778 # 22228 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_28 - 817 TrwB_AAD_bind PF10412.4 386 1.8e-07 21.5 0.1 2 2 0.00039 0.0048 7.0 0.0 242 340 655 755 641 767 0.78 # 19778 # 22228 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 346 TrwB_AAD_bind PF10412.4 386 4.7e-06 16.9 0.0 1 1 7.2e-07 8.9e-06 15.9 0.0 15 39 167 191 161 200 0.88 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 Sigma54_activ_2 PF14532.1 138 0.00037 12.1 0.0 1 1 2e-05 0.00072 11.1 0.0 7 43 153 189 151 223 0.85 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_19 - 643 T4SS-DNA_transf PF02534.9 469 9.5e-123 401.6 0.0 1 1 3.3e-124 1.2e-122 401.2 0.0 1 457 100 546 100 553 0.94 # 11801 # 13729 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.446 1_9 - 251 ArgK PF03308.11 267 7.3e-06 16.4 0.0 1 1 3.2e-07 1.2e-05 15.7 0.0 38 69 11 42 1 48 0.84 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 346 Pox_A32 PF04665.7 241 8.3e-05 13.4 0.0 1 1 4.3e-06 0.00016 12.5 0.0 13 37 167 191 132 203 0.86 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 UPF0079 PF02367.12 123 3.4e-05 15.0 0.0 1 1 1.6e-06 5.8e-05 14.3 0.0 11 39 163 191 151 215 0.79 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_20 - 346 NACHT PF05729.7 166 1.9e-05 15.9 0.0 1 1 9.9e-07 3.7e-05 14.9 0.0 3 23 170 190 168 196 0.88 # 13692 # 14729 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.465 1_9 - 251 AAA_25 PF13481.1 194 0.00012 13.0 0.0 1 1 5.1e-06 0.00019 12.4 0.0 42 130 11 83 5 117 0.65 # 2776 # 3528 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3d36a1e5-8efe-4ddf-8b52-2495f644cc0e # Target file: checkm_output/bins/pm38/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm38/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3d36a1e5-8efe-4ddf-8b52-2495f644cc0e checkm_output/bins/pm38/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:24 2020 # [ok]