# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 262 Mg_chelatase PF01078.16 207 0.00061 12.1 0.0 1 1 1.1e-05 0.0013 11.1 0.0 23 43 100 120 96 153 0.86 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_58 - 228 UPF0020 PF01170.13 180 1.8e-05 17.6 0.0 1 2 0.00028 0.033 6.9 0.0 103 121 17 35 4 89 0.71 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_58 - 228 UPF0020 PF01170.13 180 1.8e-05 17.6 0.0 2 2 7.3e-05 0.0088 8.8 0.0 28 54 163 189 160 221 0.66 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_20 - 262 IstB_IS21 PF01695.12 178 3.7e-69 224.8 0.1 1 1 4.1e-71 4.9e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_51 - 211 MipZ PF09140.6 261 7.4e-09 28.2 0.2 1 3 7.2e-07 8.7e-05 14.8 0.1 5 51 7 53 3 59 0.89 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_51 - 211 MipZ PF09140.6 261 7.4e-09 28.2 0.2 2 3 1.2e-05 0.0014 10.8 0.0 88 135 69 116 58 151 0.82 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_51 - 211 MipZ PF09140.6 261 7.4e-09 28.2 0.2 3 3 0.066 7.9 -1.4 0.0 206 237 161 193 137 202 0.76 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_65 - 176 SSB PF00436.20 104 7.9e-41 131.4 0.4 1 1 8.6e-43 1e-40 131.0 0.4 1 101 6 109 6 112 0.96 # 55159 # 55686 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_106 - 383 DUF87 PF01935.12 229 0.00074 12.5 0.0 1 1 1.1e-05 0.0014 11.7 0.0 28 56 162 191 161 192 0.88 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_18 - 287 AAA_22 PF13401.1 131 4.6e-17 55.6 0.0 1 1 2.7e-18 8.1e-17 54.8 0.0 7 126 64 190 59 194 0.94 # 15070 # 15930 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_20 - 262 AAA_22 PF13401.1 131 3.3e-06 20.5 0.1 1 2 1.1e-05 0.00033 14.0 0.2 2 28 97 123 96 159 0.74 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 AAA_22 PF13401.1 131 3.3e-06 20.5 0.1 2 2 0.0083 0.25 4.7 0.0 87 117 151 196 132 204 0.62 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_106 - 383 AAA_22 PF13401.1 131 1.2e-05 18.6 0.0 1 1 9.8e-07 3e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_119 - 518 AAA_22 PF13401.1 131 0.00032 14.0 0.0 1 1 2.5e-05 0.00077 12.8 0.0 6 28 227 249 222 330 0.77 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 383 ATP_bind_1 PF03029.12 238 5.6e-05 15.9 0.0 1 1 7.2e-07 8.7e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_20 - 262 AAA_3 PF07726.6 131 0.00062 12.6 0.0 1 1 1.2e-05 0.0015 11.4 0.0 2 72 102 171 101 201 0.70 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_58 - 228 N6_N4_Mtase PF01555.13 231 8.5e-36 116.7 0.0 1 2 7.6e-15 9.2e-13 41.3 0.0 1 114 21 124 21 137 0.89 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_58 - 228 N6_N4_Mtase PF01555.13 231 8.5e-36 116.7 0.0 2 2 9.2e-25 1.1e-22 73.8 0.0 169 228 141 200 126 203 0.90 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_106 - 383 AAA_17 PF13207.1 121 2.2e-05 18.4 0.1 1 1 7.1e-06 0.00029 14.9 0.0 3 47 161 208 161 251 0.76 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_119 - 518 AAA_17 PF13207.1 121 2.6e-05 18.2 0.2 1 1 3.1e-06 0.00012 16.0 0.0 1 24 227 255 227 345 0.72 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_20 - 262 AAA_17 PF13207.1 121 0.00013 15.9 0.0 1 1 4.7e-06 0.00019 15.4 0.0 2 38 102 133 101 232 0.74 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_106 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 1 2 0.017 2 1.3 0.0 14 60 61 108 61 127 0.88 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_106 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 2 2 3.1e-06 0.00038 13.4 0.0 5 26 162 183 160 193 0.90 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_51 - 211 ArsA_ATPase PF02374.10 305 0.00035 12.8 1.2 1 2 7.6e-06 0.00092 11.4 0.8 5 32 7 34 1 48 0.85 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_51 - 211 ArsA_ATPase PF02374.10 305 0.00035 12.8 1.2 2 2 0.04 4.8 -0.8 0.0 108 134 57 87 35 89 0.66 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_20 - 262 PhoH PF02562.11 205 1.5e-08 27.2 0.1 1 1 2.9e-10 3.5e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 MCM PF00493.18 331 0.00025 13.1 0.0 1 2 7.5e-06 0.0009 11.2 0.0 56 120 98 162 82 172 0.81 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 MCM PF00493.18 331 0.00025 13.1 0.0 2 2 0.034 4.1 -0.8 0.0 161 211 190 237 186 259 0.71 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_119 - 518 T2SE PF00437.15 272 2.9e-41 134.3 0.1 1 1 9.6e-43 5.8e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 383 T2SE PF00437.15 272 9.7e-36 116.2 0.0 1 1 2.4e-37 1.5e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_119 - 518 G-alpha PF00503.15 389 0.00076 11.3 0.0 1 2 0.054 6.6 -1.6 0.0 234 272 70 113 29 117 0.79 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_119 - 518 G-alpha PF00503.15 389 0.00076 11.3 0.0 2 2 1.9e-05 0.0023 9.8 0.0 58 87 225 254 214 325 0.84 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_18 - 287 AAA_16 PF13191.1 185 1.7e-05 18.1 0.0 1 2 3.1e-05 0.00094 12.3 0.0 8 52 45 94 43 146 0.70 # 15070 # 15930 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_18 - 287 AAA_16 PF13191.1 185 1.7e-05 18.1 0.0 2 2 0.015 0.47 3.6 0.0 139 183 134 184 114 186 0.72 # 15070 # 15930 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_119 - 518 AAA_16 PF13191.1 185 0.00011 15.4 0.0 1 1 1.3e-05 0.00039 13.6 0.0 8 51 213 252 212 301 0.78 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_20 - 262 AAA_16 PF13191.1 185 0.00017 14.7 0.1 1 1 1.4e-05 0.00041 13.5 0.1 23 51 98 126 84 166 0.79 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_106 - 383 AAA_16 PF13191.1 185 0.00035 13.7 0.0 1 1 2.5e-05 0.00074 12.7 0.0 27 52 160 188 148 282 0.82 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_119 - 518 AAA_23 PF13476.1 202 0.00015 15.3 0.2 1 1 9.7e-06 0.00059 13.4 0.0 20 38 226 244 208 249 0.84 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 383 AAA_23 PF13476.1 202 0.00027 14.5 0.0 1 1 7.3e-06 0.00044 13.8 0.0 19 40 157 178 142 209 0.83 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_106 - 383 AAA_18 PF13238.1 129 1.8e-05 18.2 0.0 1 1 6e-07 3.6e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_119 - 518 AAA_18 PF13238.1 129 0.00039 13.9 0.0 1 1 2.1e-05 0.0013 12.2 0.0 1 18 228 245 228 316 0.86 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_51 - 211 CbiA PF01656.18 195 7.7e-16 51.2 0.1 1 1 1.5e-17 1.9e-15 50.0 0.1 3 178 7 164 5 180 0.75 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_119 - 518 AAA_14 PF13173.1 128 0.00095 12.3 0.0 1 1 3.7e-05 0.0045 10.1 0.0 5 30 228 254 225 286 0.80 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_20 - 262 AAA_29 PF13555.1 62 1.7e-05 17.5 0.0 1 1 8.4e-07 3.4e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_119 - 518 AAA_29 PF13555.1 62 3.4e-05 16.5 0.0 1 1 1.7e-06 6.9e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 383 AAA_29 PF13555.1 62 4.6e-05 16.1 0.0 1 1 3.4e-06 0.00014 14.6 0.0 26 44 160 178 151 186 0.83 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_20 - 262 AAA PF00004.24 132 1.3e-07 25.1 0.0 1 1 5.3e-09 2.1e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_119 - 518 AAA PF00004.24 132 0.0003 14.2 0.1 1 2 0.00098 0.04 7.3 0.0 1 21 228 248 228 278 0.83 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_119 - 518 AAA PF00004.24 132 0.0003 14.2 0.1 2 2 0.051 2.1 1.8 0.0 9 66 442 508 436 515 0.64 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_51 - 211 AAA PF00004.24 132 0.001 12.5 0.0 1 1 4.3e-05 0.0017 11.7 0.0 8 38 13 55 9 104 0.73 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_20 - 262 Bac_DnaA PF00308.13 219 1.6e-10 34.2 0.0 1 1 2.1e-12 2.5e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_18 - 287 TniB PF05621.6 302 4.2e-201 659.2 5.6 1 1 3.8e-203 4.7e-201 659.0 5.6 1 285 1 285 1 286 1.00 # 15070 # 15930 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_81 - 764 TraG-D_C PF12696.2 128 6.3e-07 22.5 0.2 1 1 1.2e-08 1.4e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 68943 # 71234 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_51 - 211 AAA_31 PF13614.1 157 1.1e-06 21.8 0.0 1 2 8.4e-07 0.0001 15.5 0.0 2 44 4 46 4 61 0.86 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_51 - 211 AAA_31 PF13614.1 157 1.1e-06 21.8 0.0 2 2 0.0023 0.28 4.3 0.0 112 151 72 112 57 117 0.82 # 46132 # 46764 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_20 - 262 AAA_33 PF13671.1 143 0.00044 13.3 0.2 1 1 8.9e-06 0.0011 12.1 0.2 2 36 102 142 102 255 0.67 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 KTI12 PF08433.5 270 0.00021 13.7 0.4 1 2 6.4e-05 0.0077 8.6 0.0 4 81 102 172 101 174 0.68 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 KTI12 PF08433.5 270 0.00021 13.7 0.4 2 2 0.0037 0.44 2.8 0.1 34 59 232 257 212 261 0.77 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 DnaB_C PF03796.10 259 0.00018 13.6 0.0 1 1 2.4e-06 0.00029 12.9 0.0 16 55 96 135 85 158 0.90 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_58 - 228 Methyltransf_26 PF13659.1 117 1.3e-11 37.8 0.1 1 2 2.6e-07 3.1e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_58 - 228 Methyltransf_26 PF13659.1 117 1.3e-11 37.8 0.1 2 2 9.7e-08 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_119 - 518 AAA_30 PF13604.1 196 0.00039 13.2 0.0 1 1 1.2e-05 0.0007 12.4 0.0 4 44 211 251 209 276 0.84 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_20 - 262 AAA_30 PF13604.1 196 0.00057 12.7 0.2 1 1 2.8e-05 0.0017 11.1 0.1 16 49 97 131 87 162 0.73 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_109 - 194 DNA_pol3_delta PF06144.8 172 2.5e-06 20.3 0.0 1 1 3e-08 3.6e-06 19.8 0.0 35 99 91 151 73 178 0.80 # 97902 # 98483 # -1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 1_119 - 518 ABC_tran PF00005.22 137 9.1e-05 16.0 0.0 1 1 5.3e-06 0.00032 14.2 0.0 12 37 226 251 217 288 0.81 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 383 ABC_tran PF00005.22 137 0.00014 15.4 0.0 1 1 4.3e-06 0.00026 14.5 0.0 16 35 162 181 152 211 0.87 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 228 Cons_hypoth95 PF03602.10 183 9e-06 18.3 0.0 1 2 0.00027 0.032 6.8 0.0 112 168 18 76 9 83 0.68 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_58 - 228 Cons_hypoth95 PF03602.10 183 9e-06 18.3 0.0 2 2 3.5e-05 0.0042 9.6 0.0 41 62 162 183 144 218 0.77 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_119 - 518 DAP3 PF10236.4 309 0.00075 11.6 0.0 1 1 1.2e-05 0.0014 10.7 0.0 21 42 223 244 215 253 0.86 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_20 - 262 RuvB_N PF05496.7 234 0.00063 12.0 0.0 1 1 7.1e-06 0.00086 11.5 0.0 48 75 97 124 45 170 0.84 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 AAA_19 PF13245.1 76 4.5e-07 22.8 0.0 1 1 1.9e-08 1.2e-06 21.4 0.0 11 37 101 126 95 147 0.81 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_119 - 518 AAA_19 PF13245.1 76 0.00011 15.1 0.0 1 1 5.3e-06 0.00032 13.7 0.0 10 46 226 259 218 268 0.79 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 1015 AAA_10 PF12846.2 304 1.4e-30 99.9 0.0 1 1 1e-31 3.2e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 81183 # 84227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_81 - 764 AAA_10 PF12846.2 304 3.1e-05 16.6 1.0 1 1 3.1e-06 9.5e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 68943 # 71234 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_119 - 518 AAA_10 PF12846.2 304 0.00027 13.6 0.0 1 1 1.7e-05 0.00051 12.7 0.0 4 30 228 256 226 320 0.81 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 383 AAA_10 PF12846.2 304 0.00062 12.4 0.0 1 1 4e-05 0.0012 11.4 0.0 2 21 158 177 157 196 0.83 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_20 - 262 DUF815 PF05673.8 250 0.00027 13.1 0.0 1 1 3.6e-06 0.00044 12.4 0.0 23 76 65 122 46 139 0.79 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_77 - 283 Methyltransf_27 PF13708.1 194 1.5e-66 216.8 0.0 1 1 1.6e-68 2e-66 216.4 0.0 2 194 85 278 84 278 0.96 # 64362 # 65210 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_81 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 1 2 9.3e-05 0.011 7.4 0.0 11 32 132 153 126 157 0.84 # 68943 # 71234 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_81 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 2 2 3e-05 0.0036 9.0 0.1 247 332 440 525 427 555 0.88 # 68943 # 71234 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 262 AAA_11 PF13086.1 236 0.00055 12.7 0.3 1 1 8.7e-06 0.0011 11.8 0.3 6 44 89 142 82 260 0.72 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 Sigma54_activ_2 PF14532.1 138 0.00036 13.8 0.1 1 1 7.7e-06 0.00093 12.4 0.0 3 44 79 122 77 151 0.81 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_18 - 287 AAA_32 PF13654.1 509 0.00017 13.5 0.1 1 2 6.6e-06 0.00079 11.3 0.0 8 81 34 112 26 124 0.86 # 15070 # 15930 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_18 - 287 AAA_32 PF13654.1 509 0.00017 13.5 0.1 2 2 0.02 2.5 -0.3 0.1 472 502 255 285 242 286 0.89 # 15070 # 15930 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_58 - 228 MethyltransfD12 PF02086.10 260 0.00041 13.0 0.0 1 2 0.014 1.7 1.1 0.0 175 188 18 31 8 91 0.80 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_58 - 228 MethyltransfD12 PF02086.10 260 0.00041 13.0 0.0 2 2 3.3e-05 0.004 9.7 0.0 16 46 157 189 148 197 0.78 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_106 - 383 RNA_helicase PF00910.17 107 0.00012 15.5 0.0 1 1 1.9e-06 0.00023 14.5 0.0 2 28 161 187 160 205 0.83 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_20 - 262 NACHT PF05729.7 166 0.0015 11.4 2.1 1 2 5.9e-05 0.0071 9.2 0.3 3 23 102 122 100 148 0.84 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 NACHT PF05729.7 166 0.0015 11.4 2.1 2 2 0.012 1.4 1.7 0.1 80 127 156 200 139 221 0.76 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 AAA_25 PF13481.1 194 0.00013 14.6 0.0 1 1 5.4e-06 0.00022 13.8 0.0 29 57 95 123 76 170 0.86 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_106 - 383 AAA_25 PF13481.1 194 0.00024 13.7 0.0 1 1 1.1e-05 0.00043 12.9 0.0 24 58 148 182 124 207 0.78 # 95089 # 96237 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_119 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 1 2 0.00013 0.0053 9.3 0.0 25 65 217 260 200 270 0.72 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_119 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 2 2 0.058 2.3 0.7 0.0 153 190 297 337 292 340 0.74 # 107973 # 109526 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_58 - 228 Methyltransf_15 PF09445.5 164 0.00096 11.9 0.0 1 2 0.045 5.4 -0.3 0.0 53 79 4 29 2 32 0.90 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_58 - 228 Methyltransf_15 PF09445.5 164 0.00096 11.9 0.0 2 2 4.2e-05 0.0051 9.5 0.0 3 31 166 194 164 209 0.86 # 50715 # 51398 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_20 - 262 AAA_28 PF13521.1 163 1.1e-05 18.6 1.1 1 1 4.6e-07 5.5e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_20 - 262 AAA_5 PF07728.9 139 0.00023 14.1 0.2 1 1 4.3e-06 0.00052 12.9 0.2 1 19 101 119 101 243 0.78 # 17542 # 18327 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/26455b49-c60b-48a1-8bc1-d724305a7dbe # Target file: checkm_output/bins/pm376/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm376/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/26455b49-c60b-48a1-8bc1-d724305a7dbe checkm_output/bins/pm376/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:21 2020 # [ok]