# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 302 UPF0020 PF01170.13 180 0.0002 14.0 0.0 1 2 0.0043 0.48 3.0 0.0 28 48 55 75 50 135 0.89 # 27866 # 28771 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.460 1_50 - 302 UPF0020 PF01170.13 180 0.0002 14.0 0.0 2 2 9e-05 0.01 8.5 0.0 87 116 185 214 174 221 0.90 # 27866 # 28771 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.460 1_110 - 503 Terminase_6 PF03237.10 384 4.6e-11 35.1 0.0 1 1 6.8e-13 7.6e-11 34.4 0.0 5 352 62 438 60 453 0.80 # 86107 # 87615 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_53 - 214 MipZ PF09140.6 261 3.9e-18 58.4 0.9 1 2 1.6e-17 1.8e-15 49.7 0.6 2 140 2 120 1 142 0.86 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 MipZ PF09140.6 261 3.9e-18 58.4 0.9 2 2 0.049 5.4 -1.0 0.0 212 234 175 197 161 209 0.77 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 DUF87 PF01935.12 229 0.00039 13.3 0.0 1 1 7.5e-06 0.00084 12.2 0.0 33 61 11 38 6 55 0.94 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_25 - 163 Methyltransf_11 PF08241.7 95 0.00076 13.1 0.1 1 2 4e-05 0.0045 10.6 0.0 8 92 5 93 3 96 0.72 # 12166 # 12654 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_25 - 163 Methyltransf_11 PF08241.7 95 0.00076 13.1 0.1 2 2 0.076 8.4 0.1 0.0 74 92 143 161 117 161 0.85 # 12166 # 12654 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_53 - 214 SRP54 PF00448.17 196 5e-07 22.4 0.2 1 1 7.6e-09 8.4e-07 21.6 0.2 4 98 3 93 1 104 0.75 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 MobB PF03205.9 140 0.00037 13.3 0.0 1 2 2e-05 0.0022 10.7 0.0 1 41 1 40 1 50 0.84 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 MobB PF03205.9 140 0.00037 13.3 0.0 2 2 0.047 5.2 -0.2 0.0 44 65 84 108 77 132 0.71 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_51 - 554 tRNA-synt_1c PF00749.16 314 5.7e-127 415.7 0.0 1 1 6.5e-129 7.2e-127 415.3 0.0 2 313 28 337 27 338 0.99 # 28820 # 30481 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_97 - 2279 Helicase_C PF00271.26 78 6.2e-07 22.3 0.1 1 1 2.5e-08 2.7e-06 20.3 0.0 24 78 1465 1520 1457 1520 0.88 # 69788 # 76624 # 1 # ID=1_97;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.506 1_53 - 214 ArsA_ATPase PF02374.10 305 7.8e-09 28.0 0.9 1 3 2.2e-08 2.5e-06 19.8 0.1 3 38 3 38 1 42 0.93 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 ArsA_ATPase PF02374.10 305 7.8e-09 28.0 0.9 2 3 0.017 1.9 0.4 0.0 107 135 57 87 50 89 0.71 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 ArsA_ATPase PF02374.10 305 7.8e-09 28.0 0.9 3 3 0.00082 0.092 4.7 0.0 185 234 115 165 93 180 0.87 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_110 - 503 Terminase_1 PF03354.10 477 6.5e-05 14.5 0.0 1 1 8.2e-07 9.1e-05 14.0 0.0 24 155 56 191 35 213 0.75 # 86107 # 87615 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_53 - 214 Methyltransf_24 PF13578.1 106 0.00073 13.5 0.0 1 1 1.3e-05 0.0014 12.5 0.0 8 78 15 87 10 105 0.69 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 VirC1 PF07015.6 231 9.5e-15 47.3 0.0 1 1 1e-16 1.1e-14 47.1 0.0 4 188 3 187 1 210 0.84 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 Fer4_NifH PF00142.13 273 2e-07 23.5 0.1 1 2 1.8e-08 2e-06 20.2 0.0 5 45 6 46 2 85 0.79 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 Fer4_NifH PF00142.13 273 2e-07 23.5 0.1 2 2 0.011 1.2 1.3 0.0 187 232 151 198 141 210 0.72 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_17 - 216 AAA_18 PF13238.1 129 0.00054 13.3 1.9 1 2 0.0049 0.55 3.6 0.3 64 113 61 123 9 130 0.56 # 8391 # 9038 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_17 - 216 AAA_18 PF13238.1 129 0.00054 13.3 1.9 2 2 8.6e-05 0.0095 9.3 0.1 1 22 133 154 133 179 0.79 # 8391 # 9038 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_103 - 403 AAA_13 PF13166.1 712 4.6e-06 18.3 7.3 1 1 1.5e-07 8.5e-06 17.5 7.3 289 474 13 213 3 216 0.64 # 78614 # 79822 # 1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_85 - 662 AAA_13 PF13166.1 712 0.0013 10.2 7.1 1 1 5.2e-05 0.0029 9.1 7.1 366 450 184 277 154 317 0.65 # 58763 # 60748 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_53 - 214 CbiA PF01656.18 195 1.4e-25 82.8 0.0 1 1 1.8e-27 2e-25 82.4 0.0 1 190 3 178 3 183 0.77 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_97 - 2279 N6_Mtase PF02384.11 311 2.6e-06 19.7 0.0 1 1 3e-07 3.3e-05 16.1 0.0 114 235 170 282 85 296 0.75 # 69788 # 76624 # 1 # ID=1_97;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.506 1_53 - 214 AAA_31 PF13614.1 157 5e-11 35.8 0.1 1 2 7.7e-11 8.5e-09 28.6 0.0 2 41 2 41 1 45 0.92 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 AAA_31 PF13614.1 157 5e-11 35.8 0.1 2 2 0.0012 0.13 5.2 0.0 112 151 73 111 65 116 0.77 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_97 - 2279 Methyltransf_26 PF13659.1 117 2.9e-09 30.1 0.0 1 1 1.5e-10 8.1e-09 28.6 0.0 1 117 118 231 118 231 0.87 # 69788 # 76624 # 1 # ID=1_97;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.506 1_50 - 302 Methyltransf_26 PF13659.1 117 0.00014 15.0 0.0 1 1 7.9e-06 0.00044 13.4 0.0 2 83 57 217 56 260 0.58 # 27866 # 28771 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.460 1_110 - 503 AAA_30 PF13604.1 196 0.0022 10.6 2.7 1 2 0.002 0.22 4.1 1.2 4 37 41 73 39 99 0.78 # 86107 # 87615 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_110 - 503 AAA_30 PF13604.1 196 0.0022 10.6 2.7 2 2 0.00076 0.084 5.4 0.0 89 127 156 194 140 199 0.81 # 86107 # 87615 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_53 - 214 AAA_19 PF13245.1 76 3.2e-05 16.7 0.2 1 1 1.7e-06 0.00019 14.3 0.1 19 56 10 45 3 121 0.85 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_110 - 503 Helicase_RecD PF05127.9 177 0.00017 14.3 0.0 1 1 3.2e-06 0.00035 13.3 0.0 2 105 59 175 58 195 0.71 # 86107 # 87615 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_53 - 214 AAA_10 PF12846.2 304 0.00043 12.8 0.0 1 1 2.5e-05 0.0027 10.2 0.0 11 45 11 47 4 186 0.90 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_97 - 2279 ResIII PF04851.10 184 1.5e-06 21.2 0.0 1 2 1.2e-05 0.0013 11.6 0.0 9 77 829 894 820 925 0.77 # 69788 # 76624 # 1 # ID=1_97;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.506 1_97 - 2279 ResIII PF04851.10 184 1.5e-06 21.2 0.0 2 2 0.0005 0.055 6.3 0.0 85 182 973 1098 937 1100 0.60 # 69788 # 76624 # 1 # ID=1_97;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.506 1_50 - 302 MethyltransfD12 PF02086.10 260 1.5e-56 184.8 0.0 1 1 1.7e-58 1.9e-56 184.4 0.0 1 259 38 282 38 283 0.90 # 27866 # 28771 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.460 1_5 - 147 EFP PF01132.15 55 0.00026 13.7 0.0 1 1 4.5e-06 0.0005 12.8 0.0 23 53 54 84 51 85 0.91 # 2552 # 2992 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_53 - 214 GTP_EFTU PF00009.22 188 0.00067 12.2 0.0 1 1 9.2e-06 0.001 11.6 0.0 15 99 13 106 3 122 0.77 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 AAA_24 PF13479.1 213 0.00017 14.3 0.0 1 1 2.2e-06 0.00024 13.7 0.0 11 79 9 89 1 100 0.72 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_53 - 214 AAA_25 PF13481.1 194 0.00039 12.9 0.0 1 1 6.5e-06 0.00072 12.0 0.0 42 151 10 87 3 105 0.69 # 31030 # 31671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_97 - 2279 SNF2_N PF00176.18 299 4.8e-18 58.0 0.0 1 1 1.4e-19 1.6e-17 56.2 0.0 27 271 840 1220 823 1248 0.78 # 69788 # 76624 # 1 # ID=1_97;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 216 APS_kinase PF01583.15 157 0.00023 13.9 0.1 1 1 5.1e-06 0.00057 12.6 0.1 4 40 132 168 129 179 0.91 # 8391 # 9038 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.468 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f0fcb9e2-a5a6-4495-a44e-099709dff37f # Target file: checkm_output/bins/pm361/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm361/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f0fcb9e2-a5a6-4495-a44e-099709dff37f checkm_output/bins/pm361/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:13 2020 # [ok]