# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 207 cobW PF02492.14 178 0.00013 13.4 0.2 1 2 1.8e-05 0.00096 10.6 0.0 10 38 12 41 3 47 0.86 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 cobW PF02492.14 178 0.00013 13.4 0.2 2 2 0.019 1 0.7 0.1 114 146 115 147 71 170 0.78 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 IstB_IS21 PF01695.12 178 0.0003 12.2 0.0 1 1 1.1e-05 0.00058 11.3 0.0 44 66 160 182 136 186 0.87 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 MipZ PF09140.6 261 9.1e-15 46.3 0.9 1 2 1.3e-11 6.8e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 MipZ PF09140.6 261 9.1e-15 46.3 0.9 2 2 8.1e-07 4.2e-05 14.7 0.3 96 141 73 118 53 146 0.85 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 AAA_22 PF13401.1 131 0.00031 12.9 0.0 1 1 1e-05 0.00053 12.1 0.0 5 30 164 189 160 241 0.69 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 DUF1611 PF07755.6 301 1.7e-06 18.8 0.2 1 1 5.2e-08 2.7e-06 18.1 0.2 124 200 13 90 11 107 0.86 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 ATP_bind_1 PF03029.12 238 2.5e-05 15.9 0.0 1 1 1.7e-06 4.4e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 ATP_bind_1 PF03029.12 238 0.00023 12.7 0.0 1 1 1.4e-05 0.00035 12.1 0.0 2 23 169 190 168 206 0.87 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 SRP54 PF00448.17 196 5.4e-05 14.7 0.4 1 1 3.9e-06 0.0002 12.8 0.3 11 53 12 49 2 132 0.72 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_15 - 634 AAA_15 PF13175.1 415 1.9e-14 45.4 4.4 1 2 1.8e-09 9.4e-08 23.4 1.2 4 115 6 196 3 262 0.66 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_15 - 634 AAA_15 PF13175.1 415 1.9e-14 45.4 4.4 2 2 3.7e-09 1.9e-07 22.3 0.1 339 413 302 372 282 374 0.81 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_30 - 344 AAA_17 PF13207.1 121 2.4e-05 17.2 0.0 1 1 2e-06 5.2e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 AAA_17 PF13207.1 121 4.3e-05 16.4 0.0 1 1 2.3e-06 6e-05 15.9 0.0 9 80 12 86 11 169 0.70 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_15 - 634 AAA_21 PF13304.1 303 1.8e-14 46.3 9.6 1 2 3.5e-16 1.8e-14 46.3 9.6 4 302 28 374 26 375 0.70 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_15 - 634 AAA_21 PF13304.1 303 1.8e-14 46.3 9.6 2 2 0.034 1.7 0.4 2.7 42 125 386 471 379 540 0.82 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_8 - 207 MobB PF03205.9 140 1.4e-06 20.1 0.4 1 1 2.7e-07 7.1e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 MobB PF03205.9 140 6.4e-05 14.7 0.0 1 1 4.3e-06 0.00011 13.9 0.0 2 42 165 204 164 227 0.86 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 LpxK PF02606.9 326 2.7e-05 15.1 0.1 1 1 8.4e-07 4.4e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 ArsA_ATPase PF02374.10 305 1.5e-08 25.9 0.2 1 1 4.8e-10 2.5e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 T2SE PF00437.15 272 1.1e-53 173.8 0.0 1 1 2.7e-55 1.4e-53 173.4 0.0 12 267 25 312 16 316 0.89 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_30 - 344 Zeta_toxin PF06414.7 201 8.2e-06 17.0 0.0 1 1 2.5e-07 1.3e-05 16.3 0.0 6 59 153 208 148 232 0.81 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_15 - 634 SMC_N PF02463.14 220 4.9e-06 17.8 1.2 1 2 3.3e-07 1.7e-05 16.1 0.4 3 46 4 45 2 55 0.81 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_15 - 634 SMC_N PF02463.14 220 4.9e-06 17.8 1.2 2 2 0.089 4.6 -1.7 0.0 86 113 155 182 140 203 0.59 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_8 - 207 VirC1 PF07015.6 231 4.2e-15 47.4 0.2 1 1 1.6e-16 8.2e-15 46.4 0.2 1 131 1 123 1 174 0.80 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 Fer4_NifH PF00142.13 273 8.1e-07 20.4 0.0 1 1 2.8e-08 1.4e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 AAA_16 PF13191.1 185 0.00058 11.8 0.0 1 1 1.5e-05 0.0008 11.4 0.0 22 54 161 194 151 300 0.75 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_15 - 634 AAA_23 PF13476.1 202 5.9e-07 21.9 0.5 1 1 2.3e-08 5.9e-07 21.9 0.5 24 143 28 158 8 264 0.57 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_30 - 344 AAA_23 PF13476.1 202 0.00018 13.8 0.1 1 1 1.3e-05 0.00033 13.0 0.1 21 38 165 182 152 185 0.88 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 CbiA PF01656.18 195 4.8e-29 93.1 1.5 1 1 2.4e-30 1.2e-28 91.8 1.5 1 142 4 123 4 162 0.77 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 KaiC PF06745.8 227 0.00026 12.1 0.0 1 1 8.7e-06 0.00045 11.3 0.0 6 37 150 181 147 187 0.90 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_30 - 344 AAA_29 PF13555.1 62 7.8e-05 14.2 0.0 1 1 3.3e-06 0.00017 13.1 0.0 21 43 161 183 149 186 0.83 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_30 - 344 DUF258 PF03193.11 161 0.0001 13.5 0.0 1 1 3.2e-06 0.00017 12.8 0.0 31 59 158 187 141 220 0.80 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_29 - 612 TraG-D_C PF12696.2 128 1.3e-27 88.2 0.0 1 1 4.3e-29 2.3e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 24256 # 26091 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_8 - 207 AAA_31 PF13614.1 157 8.7e-09 27.5 0.2 1 2 1e-08 5.4e-07 21.6 0.0 1 39 2 40 2 49 0.94 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 AAA_31 PF13614.1 157 8.7e-09 27.5 0.2 2 2 0.0046 0.24 3.3 0.0 115 152 74 109 58 114 0.83 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 NTPase_1 PF03266.10 168 0.00016 13.4 0.1 1 2 1.1e-05 0.00059 11.5 0.0 7 58 10 66 5 94 0.80 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 NTPase_1 PF03266.10 168 0.00016 13.4 0.1 2 2 0.084 4.4 -1.0 0.1 76 99 149 172 119 176 0.66 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 AAA_33 PF13671.1 143 8.2e-06 17.7 0.0 1 2 0.07 3.6 -0.6 0.0 7 39 96 127 93 164 0.78 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_30 - 344 AAA_33 PF13671.1 143 8.2e-06 17.7 0.0 2 2 6.8e-07 3.6e-05 15.7 0.0 2 25 166 191 165 274 0.71 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 AAA_30 PF13604.1 196 0.00016 13.3 0.6 1 2 7.4e-06 0.00038 12.0 0.1 26 106 10 88 2 97 0.75 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 AAA_30 PF13604.1 196 0.00016 13.3 0.6 2 2 0.095 5 -1.4 0.0 33 59 145 171 144 175 0.86 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_15 - 634 DUF2813 PF11398.3 373 3.4e-06 18.3 0.0 1 2 3.2e-05 0.0016 9.4 0.0 25 87 26 86 1 95 0.77 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_15 - 634 DUF2813 PF11398.3 373 3.4e-06 18.3 0.0 2 2 0.00023 0.012 6.6 0.0 262 330 309 378 286 398 0.70 # 10878 # 12779 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_30 - 344 ABC_tran PF00005.22 137 2.8e-05 16.4 0.0 1 1 1.5e-06 7.8e-05 15.0 0.0 7 32 159 184 155 226 0.85 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_37 - 918 AAA_10 PF12846.2 304 1e-35 115.5 0.0 1 1 6.9e-37 1.8e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 32417 # 35170 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_8 - 207 AAA_10 PF12846.2 304 6.7e-06 17.6 0.0 1 1 4.6e-07 1.2e-05 16.8 0.0 11 47 12 50 10 70 0.82 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 DEAD PF00270.24 169 0.00011 13.7 0.0 1 1 3.6e-06 0.00018 13.0 0.0 6 33 154 182 150 246 0.77 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_29 - 612 TrwB_AAD_bind PF10412.4 386 4.6e-21 66.7 0.0 1 1 1.4e-22 7.3e-21 66.1 0.0 165 380 331 548 306 552 0.85 # 24256 # 26091 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_29 - 612 T4SS-DNA_transf PF02534.9 469 8.4e-146 478.1 0.0 1 1 2e-147 1e-145 477.8 0.0 2 461 102 571 101 578 0.98 # 24256 # 26091 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_8 - 207 ArgK PF03308.11 267 5.7e-05 13.9 0.0 1 1 2.5e-06 0.00013 12.7 0.0 39 72 12 45 5 53 0.90 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 UPF0079 PF02367.12 123 0.00022 12.8 0.0 1 1 7.5e-06 0.00039 12.1 0.0 7 39 155 187 149 196 0.83 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 AAA_24 PF13479.1 213 0.00033 12.2 0.7 1 2 1.7e-05 0.00087 10.9 0.1 12 88 11 95 3 99 0.81 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_8 - 207 AAA_24 PF13479.1 213 0.00033 12.2 0.7 2 2 0.078 4.1 -1.1 0.0 168 206 118 156 115 164 0.79 # 4885 # 5505 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 344 AAA_25 PF13481.1 194 0.00012 13.5 0.0 1 1 3.2e-06 0.00017 13.0 0.0 21 51 151 181 139 248 0.87 # 26094 # 27125 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/82adae86-57d6-4c9d-b800-1ee37ed557db # Target file: checkm_output/bins/pm360/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm360/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/82adae86-57d6-4c9d-b800-1ee37ed557db checkm_output/bins/pm360/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:12 2020 # [ok]