# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 72 cobW PF02492.14 178 0.00012 14.2 0.0 1 1 1.9e-06 0.00016 13.8 0.0 5 25 42 66 39 71 0.77 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 2_1 - 190 MipZ PF09140.6 261 1.2e-05 17.1 0.1 1 2 0.023 1.9 0.0 0.0 73 105 31 63 7 74 0.64 # 1 # 570 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 2_1 - 190 MipZ PF09140.6 261 1.2e-05 17.1 0.1 2 2 7e-07 5.7e-05 14.9 0.0 84 136 98 150 87 176 0.87 # 1 # 570 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_57 - 323 DUF87 PF01935.12 229 0.00049 12.6 0.2 1 3 5.2e-05 0.0043 9.5 0.0 26 52 43 69 40 73 0.85 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 DUF87 PF01935.12 229 0.00049 12.6 0.2 2 3 0.083 6.8 -1.0 0.0 135 194 79 139 68 151 0.68 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 DUF87 PF01935.12 229 0.00049 12.6 0.2 3 3 0.067 5.5 -0.7 0.0 121 195 198 299 171 308 0.59 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 NB-ARC PF00931.17 287 0.00033 12.2 0.3 1 1 5.9e-06 0.00049 11.6 0.3 8 104 29 126 22 144 0.74 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_22 PF13401.1 131 4.1e-16 52.0 0.3 1 1 2.2e-17 9.2e-16 50.8 0.3 3 129 39 170 36 172 0.77 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_11 - 72 AAA_22 PF13401.1 131 0.00072 12.4 0.0 1 1 3.4e-05 0.0014 11.4 0.0 7 31 40 64 31 69 0.84 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_57 - 323 PRK PF00485.13 194 0.00028 13.1 0.0 1 1 7e-06 0.00057 12.1 0.0 1 38 42 81 42 132 0.66 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_17 PF13207.1 121 0.00012 15.5 0.1 1 1 3.4e-06 0.00028 14.4 0.0 1 40 42 89 42 186 0.63 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 MobB PF03205.9 140 0.00026 13.3 0.1 1 1 1.1e-05 0.00092 11.6 0.0 2 31 42 70 41 86 0.78 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 T2SE PF00437.15 272 2.2e-06 19.3 0.7 1 1 1.3e-07 1.1e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 Arch_ATPase PF01637.13 234 3e-05 16.4 0.2 1 1 8.6e-07 7e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_16 PF13191.1 185 2.9e-11 36.3 1.2 1 1 9.1e-12 3.7e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_11 - 72 AAA_16 PF13191.1 185 0.00024 13.7 0.1 1 1 6.3e-06 0.00026 13.6 0.1 26 51 39 64 27 71 0.85 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_57 - 323 AAA_18 PF13238.1 129 7.5e-05 15.7 0.0 1 1 1.7e-06 0.00014 14.8 0.0 1 23 43 90 43 138 0.67 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_1 - 190 CbiA PF01656.18 195 5e-15 48.0 0.0 1 1 7.7e-17 6.3e-15 47.7 0.0 22 140 7 158 6 176 0.72 # 1 # 570 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_57 - 323 KaiC PF06745.8 227 0.00016 13.4 0.1 1 1 4.3e-06 0.00035 12.3 0.1 12 43 33 63 27 149 0.80 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_14 PF13173.1 128 3.4e-06 19.6 0.0 1 1 1.7e-07 1.4e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA PF00004.24 132 1.2e-06 21.3 0.0 1 1 3.5e-08 2.9e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_1 - 190 AAA_31 PF13614.1 157 0.0002 13.9 0.1 1 2 0.075 6.2 -0.6 0.0 37 52 37 52 5 77 0.50 # 1 # 570 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 2_1 - 190 AAA_31 PF13614.1 157 0.0002 13.9 0.1 2 2 1e-05 0.00082 12.0 0.0 108 147 103 141 97 147 0.87 # 1 # 570 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_57 - 323 AAA_33 PF13671.1 143 0.00013 14.5 0.0 1 1 3.7e-06 0.0003 13.3 0.0 1 45 42 100 42 132 0.60 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_30 PF13604.1 196 0.00013 14.2 0.3 1 1 4.9e-06 0.0004 12.6 0.3 15 128 38 164 27 170 0.55 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 ABC_tran PF00005.22 137 5.8e-06 19.3 0.1 1 1 1.4e-07 1.1e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_19 PF13245.1 76 5.3e-05 15.6 0.2 1 1 6.6e-06 0.00027 13.3 0.1 6 37 36 67 32 119 0.75 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_11 - 72 AAA_19 PF13245.1 76 0.00013 14.3 0.0 1 1 3.8e-06 0.00015 14.1 0.0 15 42 42 68 29 71 0.79 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_11 - 72 DUF463 PF04317.7 443 0.00077 10.7 0.0 1 1 1.1e-05 0.00087 10.5 0.0 4 30 41 67 38 71 0.88 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_57 - 323 AAA_10 PF12846.2 304 8.3e-07 21.3 0.1 1 3 8.4e-06 0.00034 12.7 0.0 3 34 42 73 40 106 0.73 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_10 PF12846.2 304 8.3e-07 21.3 0.1 2 3 0.0013 0.052 5.5 0.0 216 245 120 150 79 207 0.83 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_10 PF12846.2 304 8.3e-07 21.3 0.1 3 3 0.072 3 -0.3 0.0 106 170 239 301 179 314 0.57 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_11 - 72 AAA_10 PF12846.2 304 0.00034 12.7 0.1 1 2 0.0013 0.052 5.5 0.0 272 285 15 32 2 34 0.75 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_11 - 72 AAA_10 PF12846.2 304 0.00034 12.7 0.1 2 2 0.0011 0.044 5.8 0.0 2 29 38 65 37 69 0.87 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_57 - 323 ResIII PF04851.10 184 8e-06 18.4 0.2 1 2 1.7e-05 0.0014 11.1 0.3 29 101 44 110 20 121 0.72 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 ResIII PF04851.10 184 8e-06 18.4 0.2 2 2 0.00058 0.047 6.1 0.0 131 162 109 140 96 153 0.63 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_62 - 372 DUF3584 PF12128.3 1201 0.036 3.9 61.1 1 1 0.0042 0.34 0.6 61.0 261 533 79 352 68 366 0.56 # 46197 # 47312 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_11 - 72 Viral_helicase1 PF01443.13 234 0.00053 12.1 0.1 1 1 8.5e-06 0.0007 11.7 0.1 3 29 42 66 40 70 0.83 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_57 - 323 DUF2075 PF09848.4 352 1.5e-06 20.0 0.1 1 1 5.2e-08 2.1e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_11 - 72 DUF2075 PF09848.4 352 1.9e-05 16.3 0.0 1 1 5.4e-07 2.2e-05 16.1 0.0 4 30 40 66 37 71 0.78 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_57 - 323 TrwB_AAD_bind PF10412.4 386 0.00012 13.4 0.5 1 3 1.7e-05 0.0014 9.9 0.0 14 44 39 69 35 76 0.83 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 TrwB_AAD_bind PF10412.4 386 0.00012 13.4 0.5 2 3 0.021 1.7 -0.3 0.0 234 275 115 158 112 169 0.78 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 TrwB_AAD_bind PF10412.4 386 0.00012 13.4 0.5 3 3 0.037 3 -1.1 0.0 128 182 251 306 240 311 0.71 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_11 - 72 AAA_11 PF13086.1 236 0.00021 13.5 0.0 1 1 2.5e-06 0.00021 13.5 0.0 11 43 32 63 17 71 0.78 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_11 - 72 ArgK PF03308.11 267 4.2e-05 15.0 0.0 1 1 5.2e-07 4.2e-05 15.0 0.0 28 59 36 67 17 70 0.83 # 5899 # 6114 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_57 - 323 PIF1 PF05970.9 364 2.3e-05 16.0 0.0 1 1 6.3e-07 5.2e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 UPF0079 PF02367.12 123 9.5e-05 14.7 0.0 1 1 2.2e-06 0.00018 13.8 0.0 3 45 28 70 26 114 0.84 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_33 - 129 BOF PF04076.8 103 5.4e-44 140.9 0.7 1 1 7.9e-46 6.5e-44 140.7 0.7 2 102 25 125 24 126 0.98 # 22244 # 22630 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_57 - 323 NACHT PF05729.7 166 0.0004 12.7 0.2 1 1 1.1e-05 0.00094 11.5 0.2 1 28 41 68 41 140 0.77 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 323 AAA_5 PF07728.9 139 6.6e-05 15.3 0.1 1 1 7e-06 0.00058 12.2 0.2 5 90 46 149 43 152 0.85 # 40683 # 41651 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d7c63c46-278a-4c15-9534-791a4380f8ef # Target file: checkm_output/bins/pm355/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm355/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d7c63c46-278a-4c15-9534-791a4380f8ef checkm_output/bins/pm355/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:09 2020 # [ok]