# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_92 - 266 Mg_chelatase PF01078.16 207 0.00065 12.2 0.0 1 1 1e-05 0.0014 11.1 0.0 23 42 98 117 84 124 0.89 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_78 - 234 UPF0020 PF01170.13 180 2e-06 20.8 0.0 1 2 2.2e-05 0.0029 10.5 0.0 103 126 17 40 5 87 0.71 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_78 - 234 UPF0020 PF01170.13 180 2e-06 20.8 0.0 2 2 9.4e-05 0.013 8.4 0.0 28 51 170 193 165 227 0.75 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_92 - 266 IstB_IS21 PF01695.12 178 2.1e-77 251.9 0.4 1 1 2.6e-79 3.5e-77 251.1 0.0 1 177 51 227 51 228 0.99 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_83 - 213 MipZ PF09140.6 261 1.8e-16 53.2 1.0 1 2 1.6e-15 2.2e-13 43.2 0.7 2 143 2 123 1 133 0.88 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_83 - 213 MipZ PF09140.6 261 1.8e-16 53.2 1.0 2 2 0.01 1.4 1.2 0.0 215 237 178 200 170 210 0.69 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_68 - 181 SSB PF00436.20 104 1.4e-41 133.9 0.4 1 1 1.3e-43 1.8e-41 133.6 0.4 1 99 6 105 6 113 0.95 # 52835 # 53377 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_15 - 1754 UvrD_C_2 PF13538.1 104 9.6e-08 25.5 0.2 1 1 4.8e-09 6.4e-07 22.8 0.0 3 102 1340 1443 1336 1445 0.76 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_35 - 880 DUF87 PF01935.12 229 3.2e-06 20.4 0.0 1 1 3.2e-07 2.1e-05 17.7 0.0 26 222 484 674 479 681 0.82 # 30856 # 33495 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 3_1 - 282 DUF87 PF01935.12 229 8.5e-05 15.7 0.3 1 1 2e-06 0.00013 15.1 0.3 24 47 50 73 36 85 0.87 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_2 - 278 NB-ARC PF00931.17 287 0.00015 14.0 0.0 1 1 1.5e-06 0.0002 13.5 0.0 5 41 35 71 31 78 0.85 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_92 - 266 AAA_22 PF13401.1 131 4.2e-07 23.5 0.3 1 2 0.0001 0.0034 10.8 0.0 5 21 98 114 94 134 0.85 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 AAA_22 PF13401.1 131 4.2e-07 23.5 0.3 2 2 0.00015 0.0049 10.3 0.1 77 121 147 195 132 203 0.72 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_2 - 278 AAA_22 PF13401.1 131 7e-05 16.3 0.0 1 1 5.6e-06 0.00019 14.9 0.0 9 37 54 99 47 223 0.60 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_15 - 1754 AAA_22 PF13401.1 131 0.00042 13.8 0.0 1 2 0.023 0.77 3.2 0.0 89 121 505 536 468 538 0.72 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_15 - 1754 AAA_22 PF13401.1 131 0.00042 13.8 0.0 2 2 0.0017 0.058 6.9 0.0 3 28 986 1011 983 1061 0.80 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 3_1 - 282 AAA_22 PF13401.1 131 0.00056 13.4 0.3 1 1 4.1e-05 0.0014 12.1 0.3 7 28 52 73 46 223 0.84 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_83 - 213 SRP54 PF00448.17 196 1.6e-11 37.3 0.2 1 1 2.2e-13 2.9e-11 36.5 0.2 10 97 10 92 1 97 0.78 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 AAA_3 PF07726.6 131 0.0011 11.9 0.0 1 1 1.4e-05 0.0019 11.1 0.0 2 75 100 171 99 222 0.74 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_78 - 234 N6_N4_Mtase PF01555.13 231 1.3e-33 109.7 0.0 1 2 5e-14 6.7e-12 38.7 0.0 1 113 21 130 21 146 0.86 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_78 - 234 N6_N4_Mtase PF01555.13 231 1.3e-33 109.7 0.0 2 2 1.9e-23 2.6e-21 69.5 0.0 170 227 149 206 133 210 0.92 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_92 - 266 AAA_17 PF13207.1 121 1.6e-05 19.1 0.0 1 1 2.3e-06 7.8e-05 16.8 0.0 2 64 100 156 99 198 0.57 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_1 - 282 AAA_17 PF13207.1 121 0.00034 14.8 0.1 1 1 2e-05 0.00066 13.8 0.1 1 19 51 69 51 111 0.90 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_2 - 278 AAA_17 PF13207.1 121 0.00099 13.3 0.6 1 1 7.5e-05 0.0025 12.0 0.6 1 19 51 69 51 103 0.84 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_16 - 769 AAA_17 PF13207.1 121 0.0012 13.0 0.5 1 1 9.5e-05 0.0032 11.6 0.0 3 22 189 208 187 358 0.76 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 3_1 - 282 AAA_21 PF13304.1 303 5.5e-09 29.6 2.7 1 2 0.0022 0.15 5.3 0.4 3 20 53 70 52 95 0.83 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_1 - 282 AAA_21 PF13304.1 303 5.5e-09 29.6 2.7 2 2 2.7e-09 1.8e-07 24.6 0.1 233 299 156 221 133 224 0.90 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_2 - 278 AAA_21 PF13304.1 303 1.1e-07 25.4 0.2 1 2 0.00029 0.019 8.2 0.0 9 22 59 72 53 86 0.86 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 3_2 - 278 AAA_21 PF13304.1 303 1.1e-07 25.4 0.2 2 2 1.7e-06 0.00012 15.4 0.0 236 302 160 224 141 225 0.90 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_83 - 213 ArsA_ATPase PF02374.10 305 7.4e-08 25.0 1.0 1 1 3.6e-09 2.4e-07 23.4 0.9 6 66 5 70 1 132 0.83 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 ArsA_ATPase PF02374.10 305 0.00091 11.6 0.0 1 1 2.1e-05 0.0014 11.0 0.0 6 38 102 134 98 169 0.91 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 PhoH PF02562.11 205 2e-06 20.5 0.0 1 1 3.5e-08 4.7e-06 19.3 0.0 15 47 93 125 80 149 0.87 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 AFG1_ATPase PF03969.11 362 2e-06 20.1 0.0 1 1 2e-08 2.6e-06 19.7 0.0 63 226 98 257 54 263 0.80 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_83 - 213 Zeta_toxin PF06414.7 201 0.00036 13.0 0.0 1 1 1e-05 0.00067 12.1 0.0 20 106 4 91 1 102 0.76 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 3_1 - 282 Zeta_toxin PF06414.7 201 0.0011 11.4 0.0 1 1 2.4e-05 0.0016 10.8 0.0 19 60 52 97 36 117 0.78 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_1 - 282 SMC_N PF02463.14 220 3.7e-06 19.6 0.0 1 1 1.2e-07 8e-06 18.5 0.0 27 186 52 205 35 220 0.74 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_2 - 278 SMC_N PF02463.14 220 0.0002 14.0 0.0 1 2 0.0011 0.073 5.6 0.0 28 45 53 70 41 73 0.84 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 3_2 - 278 SMC_N PF02463.14 220 0.0002 14.0 0.0 2 2 0.00063 0.042 6.3 0.0 123 204 140 226 121 238 0.77 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_83 - 213 VirC1 PF07015.6 231 1.6e-08 27.2 0.1 1 1 1.6e-10 2.1e-08 26.8 0.1 8 205 7 204 1 210 0.76 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_83 - 213 Fer4_NifH PF00142.13 273 3.4e-05 16.4 0.5 1 1 4.9e-07 6.5e-05 15.5 0.4 8 40 9 41 1 71 0.82 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 Arch_ATPase PF01637.13 234 0.00047 13.2 0.0 1 1 1.7e-05 0.0022 11.0 0.0 18 120 95 192 81 196 0.61 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_1 - 282 AAA_16 PF13191.1 185 4.4e-06 20.1 3.0 1 1 1.7e-07 5.7e-06 19.7 2.3 15 142 37 172 29 229 0.66 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_16 - 769 AAA_16 PF13191.1 185 7e-06 19.4 0.0 1 1 9.8e-07 3.3e-05 17.3 0.0 20 56 181 218 179 254 0.78 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 3_2 - 278 AAA_16 PF13191.1 185 8.2e-06 19.2 0.5 1 1 6.3e-07 2.1e-05 17.9 0.5 29 142 54 158 35 251 0.66 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_92 - 266 AAA_16 PF13191.1 185 1e-05 18.9 1.6 1 3 0.054 1.8 1.8 0.0 127 173 25 88 5 94 0.61 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 AAA_16 PF13191.1 185 1e-05 18.9 1.6 2 3 1e-05 0.00034 13.9 0.1 23 44 96 117 86 136 0.79 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 AAA_16 PF13191.1 185 1e-05 18.9 1.6 3 3 0.092 3.1 1.0 0.1 126 162 137 170 119 195 0.59 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_83 - 213 AAA_18 PF13238.1 129 0.00064 13.4 0.1 1 1 1.7e-05 0.0011 12.6 0.1 8 79 11 85 9 130 0.80 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 AAA_18 PF13238.1 129 0.00075 13.2 0.3 1 1 2.9e-05 0.002 11.8 0.2 1 19 100 118 100 160 0.82 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_83 - 213 SecA_DEAD PF07517.9 266 0.00012 14.7 0.1 1 1 1.4e-06 0.00019 14.1 0.1 98 143 9 60 5 86 0.89 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_83 - 213 CbiA PF01656.18 195 4.3e-19 62.0 0.0 1 1 8.1e-21 5.4e-19 61.6 0.0 2 145 4 129 3 180 0.82 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 CbiA PF01656.18 195 9.6e-05 15.2 0.0 1 1 1.9e-06 0.00013 14.8 0.0 9 63 107 171 100 249 0.67 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_11 - 488 KaiC PF06745.8 227 0.00017 14.0 0.0 1 1 2.7e-06 0.00037 13.0 0.0 18 53 90 125 86 128 0.93 # 5600 # 7063 # -1 # ID=2_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_92 - 266 AAA_14 PF13173.1 128 6.5e-08 25.9 0.0 1 1 1.2e-09 1.7e-07 24.6 0.0 3 96 98 197 96 206 0.72 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_2 - 278 AAA_29 PF13555.1 62 3e-05 16.9 0.0 1 1 9.6e-07 6.5e-05 15.8 0.0 24 46 50 72 39 72 0.81 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 3_1 - 282 AAA_29 PF13555.1 62 0.0001 15.2 0.9 1 1 2.9e-06 0.0002 14.2 0.1 15 43 42 69 37 78 0.80 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_92 - 266 AAA PF00004.24 132 6.1e-09 29.5 0.0 1 1 2.6e-10 1.7e-08 28.1 0.0 1 74 100 174 100 202 0.73 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_1 - 282 AAA PF00004.24 132 0.00014 15.4 0.0 1 1 4.3e-06 0.00029 14.4 0.0 1 35 52 91 52 118 0.76 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_92 - 266 Bac_DnaA PF00308.13 219 3.2e-12 39.8 0.0 1 1 4e-14 5.3e-12 39.1 0.0 36 139 99 199 71 212 0.87 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 Sigma54_activat PF00158.21 168 0.00044 13.1 0.1 1 1 0.00015 0.021 7.6 0.1 19 42 94 117 82 191 0.79 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_2 - 278 MMR_HSR1 PF01926.18 116 0.00034 13.9 0.0 1 1 5.1e-06 0.00068 12.9 0.0 1 20 51 70 51 95 0.90 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_54 - 246 N6_Mtase PF02384.11 311 3.5e-12 39.3 0.0 1 1 4.2e-14 5.6e-12 38.6 0.0 25 117 107 205 101 232 0.85 # 44164 # 44901 # -1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.564 3_1 - 282 DUF258 PF03193.11 161 0.00033 13.2 0.0 1 1 7.6e-06 0.00051 12.6 0.0 12 59 25 73 18 108 0.79 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_2 - 278 DUF258 PF03193.11 161 0.00036 13.1 0.0 1 1 9.1e-06 0.00061 12.3 0.0 30 56 43 70 28 104 0.85 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_16 - 769 TraG-D_C PF12696.2 128 1.2e-19 63.8 0.0 1 1 4.3e-21 2.9e-19 62.5 0.0 1 127 419 541 419 542 0.88 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_11 - 488 TraG-D_C PF12696.2 128 6.2e-09 29.1 0.0 1 1 1.6e-10 1.1e-08 28.3 0.0 4 127 302 425 299 426 0.79 # 5600 # 7063 # -1 # ID=2_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_83 - 213 AAA_31 PF13614.1 157 4.1e-09 29.9 0.1 1 2 9e-09 1.2e-06 21.8 0.0 3 44 3 44 1 54 0.85 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_83 - 213 AAA_31 PF13614.1 157 4.1e-09 29.9 0.1 2 2 0.00075 0.1 5.9 0.0 105 134 66 95 52 106 0.79 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 NTPase_1 PF03266.10 168 0.00043 13.3 0.0 1 2 0.00058 0.077 6.0 0.0 2 17 100 115 99 129 0.80 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 NTPase_1 PF03266.10 168 0.00043 13.3 0.0 2 2 0.001 0.14 5.2 0.0 83 107 147 170 136 197 0.76 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_83 - 213 AAA_33 PF13671.1 143 0.00034 13.8 0.0 1 2 4.3e-05 0.0029 10.8 0.0 9 85 11 94 5 126 0.68 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_83 - 213 AAA_33 PF13671.1 143 0.00034 13.8 0.0 2 2 0.055 3.7 0.7 0.0 74 96 144 166 140 183 0.80 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 AAA_33 PF13671.1 143 0.00043 13.5 0.0 1 1 1.5e-05 0.001 12.3 0.0 2 40 100 143 100 169 0.64 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 KTI12 PF08433.5 270 0.00086 11.8 0.0 1 1 1.2e-05 0.0015 11.0 0.0 4 82 100 170 99 199 0.78 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_78 - 234 Methyltransf_26 PF13659.1 117 1.6e-11 37.6 0.1 1 2 3.3e-07 2.2e-05 17.8 0.0 63 114 13 71 3 74 0.72 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_78 - 234 Methyltransf_26 PF13659.1 117 1.6e-11 37.6 0.1 2 2 3.9e-07 2.6e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_54 - 246 Methyltransf_26 PF13659.1 117 6.8e-05 16.2 0.0 1 1 2e-06 0.00013 15.3 0.0 3 70 139 211 138 238 0.82 # 44164 # 44901 # -1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.564 1_15 - 1754 AAA_30 PF13604.1 196 9.2e-45 145.9 7.4 1 2 9.3e-07 6.3e-05 15.9 1.0 9 126 424 536 422 561 0.86 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_15 - 1754 AAA_30 PF13604.1 196 9.2e-45 145.9 7.4 2 2 3.4e-42 2.3e-40 131.6 0.7 2 186 971 1158 970 1162 0.93 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 3_1 - 282 AAA_30 PF13604.1 196 0.0001 15.2 0.0 1 1 4.9e-06 0.00033 13.6 0.0 15 72 47 113 42 203 0.84 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_1 - 282 FtsK_SpoIIIE PF01580.13 205 2.6e-05 17.1 1.0 1 1 1.3e-06 5.9e-05 15.9 0.2 16 59 27 70 24 75 0.89 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_35 - 880 FtsK_SpoIIIE PF01580.13 205 0.00015 14.6 0.0 1 1 8.1e-06 0.00036 13.3 0.0 39 63 480 506 466 508 0.85 # 30856 # 33495 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_11 - 488 FtsK_SpoIIIE PF01580.13 205 0.00059 12.6 0.0 1 1 2.9e-05 0.0013 11.5 0.0 10 59 61 113 54 116 0.81 # 5600 # 7063 # -1 # ID=2_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 3_2 - 278 ABC_tran PF00005.22 137 1.6e-32 106.0 0.0 1 1 3.4e-34 2.3e-32 105.5 0.0 1 136 39 188 39 189 0.91 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 3_1 - 282 ABC_tran PF00005.22 137 2.2e-28 92.6 0.0 1 1 4.8e-30 3.2e-28 92.0 0.0 2 136 40 187 39 188 0.93 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_1 - 282 ATP-synt_ab PF00006.20 215 0.00039 13.3 0.1 1 1 4.9e-06 0.00066 12.5 0.1 7 36 41 70 36 84 0.90 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_78 - 234 Cons_hypoth95 PF03602.10 183 2.1e-05 17.3 0.0 1 2 0.00065 0.087 5.5 0.0 113 146 19 54 12 82 0.65 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_78 - 234 Cons_hypoth95 PF03602.10 183 2.1e-05 17.3 0.0 2 2 3.1e-05 0.0042 9.8 0.0 20 60 149 188 142 225 0.73 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_92 - 266 RuvB_N PF05496.7 234 1.4e-05 17.5 0.1 1 1 2.2e-07 2.9e-05 16.5 0.1 48 119 95 176 73 187 0.73 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 AAA_19 PF13245.1 76 1e-07 25.0 0.0 1 1 1.5e-08 3.9e-07 23.1 0.0 13 52 100 135 87 150 0.83 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_15 - 1754 AAA_19 PF13245.1 76 2.7e-06 20.4 0.8 1 1 1e-07 2.7e-06 20.4 0.8 8 74 984 1047 976 1050 0.69 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_83 - 213 AAA_19 PF13245.1 76 5.4e-06 19.5 0.2 1 1 4.4e-07 1.2e-05 18.4 0.2 20 62 11 51 3 76 0.83 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 3_1 - 282 AAA_19 PF13245.1 76 0.00018 14.6 0.2 1 1 2.6e-05 0.00069 12.7 0.1 8 61 47 106 43 118 0.70 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 2_11 - 488 AAA_19 PF13245.1 76 0.001 12.2 0.0 1 1 0.00013 0.0034 10.5 0.0 15 53 96 131 89 137 0.80 # 5600 # 7063 # -1 # ID=2_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_35 - 880 AAA_10 PF12846.2 304 5.9e-46 150.5 0.0 1 1 2.8e-47 9.4e-46 149.9 0.0 1 294 481 773 481 779 0.85 # 30856 # 33495 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_11 - 488 AAA_10 PF12846.2 304 6.2e-16 51.9 0.0 1 1 2e-16 6.8e-15 48.5 0.0 3 294 93 374 91 381 0.81 # 5600 # 7063 # -1 # ID=2_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_16 - 769 AAA_10 PF12846.2 304 1.4e-09 31.0 0.0 1 2 1.4e-05 0.00048 12.9 0.0 3 43 187 227 186 257 0.92 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_16 - 769 AAA_10 PF12846.2 304 1.4e-09 31.0 0.0 2 2 1.6e-06 5.5e-05 16.0 0.0 201 296 398 494 280 499 0.85 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_92 - 266 AAA_10 PF12846.2 304 0.00015 14.6 0.0 1 1 8.3e-06 0.00028 13.7 0.0 2 35 98 131 97 173 0.88 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_83 - 213 Zot PF05707.7 193 0.00022 14.0 0.0 1 1 2.3e-06 0.00031 13.5 0.0 1 53 1 53 1 90 0.69 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 3_2 - 278 Viral_helicase1 PF01443.13 234 0.00094 12.0 0.0 1 1 1.1e-05 0.0014 11.4 0.0 5 22 56 73 54 116 0.80 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_83 - 213 DUF2075 PF09848.4 352 1.5e-05 17.4 0.0 1 1 1.2e-07 1.7e-05 17.2 0.0 6 94 5 89 1 123 0.85 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_92 - 266 TIP49 PF06068.8 398 0.00057 11.9 0.1 1 2 0.00014 0.018 7.0 0.0 52 71 99 118 96 135 0.77 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 TIP49 PF06068.8 398 0.00057 11.9 0.1 2 2 0.0031 0.41 2.5 0.0 295 357 181 238 158 250 0.73 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 DEAD PF00270.24 169 0.0006 12.6 0.1 1 1 3.3e-05 0.0044 9.8 0.1 13 64 96 144 83 203 0.68 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_16 - 769 TrwB_AAD_bind PF10412.4 386 2.1e-148 487.3 0.0 1 1 5.8e-150 2.6e-148 487.0 0.0 2 386 172 561 171 561 0.99 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_11 - 488 TrwB_AAD_bind PF10412.4 386 1.5e-07 23.6 0.0 1 2 1e-06 4.5e-05 15.5 0.0 14 57 90 134 81 147 0.85 # 5600 # 7063 # -1 # ID=2_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 2_11 - 488 TrwB_AAD_bind PF10412.4 386 1.5e-07 23.6 0.0 2 2 0.00073 0.032 6.1 0.0 296 368 354 427 299 441 0.86 # 5600 # 7063 # -1 # ID=2_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_35 - 880 TrwB_AAD_bind PF10412.4 386 2.1e-05 16.6 0.2 1 1 1.2e-06 5.4e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 30856 # 33495 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_15 - 1754 AAA_11 PF13086.1 236 1.6e-05 17.9 3.6 1 3 4.6e-07 6.2e-05 15.9 0.0 2 72 971 1038 970 1061 0.83 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_15 - 1754 AAA_11 PF13086.1 236 1.6e-05 17.9 3.6 2 3 0.051 6.8 -0.5 0.0 208 232 1086 1108 1060 1110 0.71 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_15 - 1754 AAA_11 PF13086.1 236 1.6e-05 17.9 3.6 3 3 0.033 4.4 0.1 0.0 3 34 1182 1212 1180 1335 0.70 # 8632 # 13893 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_92 - 266 Sigma54_activ_2 PF14532.1 138 0.0005 13.4 0.0 1 1 1.2e-05 0.0016 11.8 0.0 17 111 93 201 82 223 0.69 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_16 - 769 T4SS-DNA_transf PF02534.9 469 1.8e-08 26.7 0.0 1 2 0.035 4.7 -1.1 0.0 128 200 260 331 249 357 0.74 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_16 - 769 T4SS-DNA_transf PF02534.9 469 1.8e-08 26.7 0.0 2 2 4.7e-10 6.3e-08 24.8 0.0 276 392 394 506 364 559 0.74 # 13893 # 16199 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_92 - 266 ArgK PF03308.11 267 0.00014 13.9 0.0 1 1 4.5e-06 0.0003 12.9 0.0 27 66 95 134 81 136 0.85 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_2 - 278 ArgK PF03308.11 267 0.0013 10.8 0.0 1 1 2.9e-05 0.002 10.2 0.0 25 50 45 70 31 93 0.83 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_35 - 880 Pox_A32 PF04665.7 241 0.0001 15.0 0.0 1 1 1.5e-06 0.00021 14.0 0.0 6 40 474 508 470 523 0.82 # 30856 # 33495 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_92 - 266 AAA_24 PF13479.1 213 0.00096 12.1 0.0 1 1 1.3e-05 0.0018 11.2 0.0 5 23 99 117 95 151 0.86 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 NACHT PF05729.7 166 0.00019 14.5 0.4 1 1 3e-05 0.0041 10.1 0.4 3 21 100 118 98 218 0.88 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 AAA_25 PF13481.1 194 8.9e-07 21.8 0.1 1 1 4.1e-08 1.8e-06 20.8 0.1 22 65 81 130 60 186 0.70 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_1 - 282 AAA_25 PF13481.1 194 0.00027 13.7 0.1 1 1 9e-06 0.0004 13.1 0.1 29 59 45 80 36 143 0.83 # 495 # 1340 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_83 - 213 AAA_25 PF13481.1 194 0.00029 13.6 0.7 1 1 1.7e-05 0.00077 12.2 0.7 41 97 9 66 2 134 0.57 # 62195 # 62833 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_78 - 234 Methyltransf_15 PF09445.5 164 0.0011 11.8 0.0 1 2 0.028 3.7 0.4 0.0 53 79 4 29 2 33 0.90 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_78 - 234 Methyltransf_15 PF09445.5 164 0.0011 11.8 0.0 2 2 7e-05 0.0093 8.8 0.0 3 30 173 200 171 213 0.90 # 57553 # 58254 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_92 - 266 AAA_28 PF13521.1 163 6.9e-05 16.2 0.8 1 2 1e-05 0.0007 12.9 0.1 2 47 100 150 99 162 0.68 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_92 - 266 AAA_28 PF13521.1 163 6.9e-05 16.2 0.8 2 2 0.0093 0.62 3.3 0.0 95 135 144 178 131 200 0.71 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_2 - 278 AAA_28 PF13521.1 163 0.00034 13.9 0.1 1 1 1.8e-05 0.0012 12.1 0.1 2 21 52 71 51 95 0.84 # 1337 # 2170 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_92 - 266 AAA_5 PF07728.9 139 9.9e-05 15.4 2.3 1 1 2.3e-06 0.0003 13.8 0.7 1 19 99 117 99 192 0.84 # 69888 # 70685 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4eef435c-138d-42a1-8515-17b42f7d5b8e # Target file: checkm_output/bins/pm35/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm35/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4eef435c-138d-42a1-8515-17b42f7d5b8e checkm_output/bins/pm35/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:06 2020 # [ok]