# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 106 cobW PF02492.14 178 4e-05 13.0 0.1 1 1 3.7e-06 4.5e-05 12.9 0.1 113 170 30 91 12 97 0.71 # 1 # 318 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.497 1_6 - 146 AAA_23 PF13476.1 202 0.00027 11.2 4.5 1 1 2.5e-05 0.0003 11.0 4.5 128 202 45 131 13 135 0.55 # 4036 # 4473 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_5 - 523 DUF3584 PF12128.3 1201 0.00014 9.1 50.2 1 2 6.6e-06 7.9e-05 9.9 37.1 339 533 57 253 44 266 0.83 # 2208 # 3776 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_5 - 523 DUF3584 PF12128.3 1201 0.00014 9.1 50.2 2 2 0.0002 0.0024 5.0 5.2 642 725 296 376 272 450 0.43 # 2208 # 3776 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fd32f0c2-bfe9-41d8-ab23-b946098e62f4 # Target file: checkm_output/bins/pm346/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm346/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fd32f0c2-bfe9-41d8-ab23-b946098e62f4 checkm_output/bins/pm346/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:00 2020 # [ok]