# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_40 - 227 UPF0020 PF01170.13 180 0.00073 12.4 0.0 1 2 0.00016 0.021 7.6 0.0 103 119 17 33 6 85 0.76 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_40 - 227 UPF0020 PF01170.13 180 0.00073 12.4 0.0 2 2 0.0053 0.69 2.7 0.0 29 53 164 187 159 217 0.69 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_16 - 72 cobW PF02492.14 178 0.00019 14.2 0.0 1 1 1.9e-06 0.00025 13.8 0.0 5 25 42 66 39 71 0.77 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_45 - 402 MipZ PF09140.6 261 7.3e-06 18.4 0.0 1 2 0.0025 0.32 3.2 0.0 3 50 111 163 109 201 0.73 # 31934 # 33139 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_45 - 402 MipZ PF09140.6 261 7.3e-06 18.4 0.0 2 2 2.8e-06 0.00036 12.9 0.0 87 136 233 282 220 305 0.87 # 31934 # 33139 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_80 - 467 3HCDH_N PF02737.13 180 1.3e-05 18.2 0.1 1 2 0.013 1.7 1.5 0.2 2 31 7 36 6 39 0.92 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 3HCDH_N PF02737.13 180 1.3e-05 18.2 0.1 2 2 2.3e-06 0.0003 13.7 0.0 2 55 176 229 175 245 0.85 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 GIDA PF01134.17 392 2.7e-11 36.1 8.4 1 3 6.3e-11 8.1e-09 28.0 5.2 1 150 6 145 6 172 0.71 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 GIDA PF01134.17 392 2.7e-11 36.1 8.4 2 3 0.0091 1.2 1.1 0.0 2 28 176 202 175 223 0.88 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 GIDA PF01134.17 392 2.7e-11 36.1 8.4 3 3 0.0018 0.23 3.4 0.1 325 368 277 316 270 336 0.80 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_32 - 173 SSB PF00436.20 104 4.3e-44 142.0 0.3 1 1 4.2e-46 5.4e-44 141.6 0.3 1 103 6 112 6 113 0.97 # 22009 # 22527 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 1_121 - 1748 UvrD_C_2 PF13538.1 104 3.1e-07 23.8 0.3 1 1 1.2e-08 1.5e-06 21.6 0.1 3 102 1337 1440 1335 1442 0.79 # 104246 # 109489 # -1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_80 - 467 Pyr_redox_2 PF07992.9 201 6e-47 153.4 0.1 1 1 6e-49 7.8e-47 153.0 0.1 1 199 6 315 6 317 0.95 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_11 - 883 DUF87 PF01935.12 229 1.8e-07 24.4 0.0 1 1 1.1e-08 7.1e-07 22.5 0.0 26 221 482 668 468 676 0.75 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_52 - 699 DUF87 PF01935.12 229 0.00028 14.0 0.3 1 1 9.2e-06 0.00059 12.9 0.3 24 44 520 540 511 552 0.85 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_52 - 699 AAA_22 PF13401.1 131 4.2e-05 17.0 0.2 1 2 2e-05 0.0013 12.1 0.1 6 24 521 539 517 564 0.88 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_52 - 699 AAA_22 PF13401.1 131 4.2e-05 17.0 0.2 2 2 0.024 1.5 2.2 0.0 55 101 619 664 610 692 0.77 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_16 - 72 AAA_22 PF13401.1 131 0.00049 13.5 0.0 1 2 0.07 4.5 0.7 0.0 106 126 17 37 5 40 0.82 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_16 - 72 AAA_22 PF13401.1 131 0.00049 13.5 0.0 2 2 2.8e-05 0.0018 11.7 0.0 6 31 39 64 29 69 0.84 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_52 - 699 PRK PF00485.13 194 0.00081 12.2 0.0 1 1 1.1e-05 0.0014 11.5 0.0 2 26 522 546 521 576 0.77 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_80 - 467 Trp_halogenase PF04820.9 454 0.00067 11.6 0.1 1 1 9.8e-06 0.0013 10.6 0.1 1 39 6 41 6 55 0.83 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 NAD_binding_7 PF13241.1 103 0.00038 14.0 0.5 1 2 0.004 0.51 3.9 0.1 7 26 4 26 3 47 0.71 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 NAD_binding_7 PF13241.1 103 0.00038 14.0 0.5 2 2 0.00072 0.093 6.3 0.0 9 41 175 211 173 287 0.71 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_40 - 227 N6_N4_Mtase PF01555.13 231 1.2e-34 113.1 0.0 1 1 4.4e-34 5.6e-32 104.3 0.0 1 227 21 199 21 203 0.91 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_52 - 699 AAA_17 PF13207.1 121 2.6e-06 21.5 0.0 1 1 1.3e-07 8.3e-06 19.9 0.0 2 23 522 543 521 615 0.70 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_122 - 716 AAA_17 PF13207.1 121 0.00043 14.4 0.0 1 1 1.9e-05 0.0012 12.9 0.0 3 27 189 217 187 284 0.70 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 699 AAA_21 PF13304.1 303 2.3e-08 27.5 0.0 1 2 5.1e-07 6.6e-05 16.2 0.0 3 41 523 562 521 572 0.70 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_52 - 699 AAA_21 PF13304.1 303 2.3e-08 27.5 0.0 2 2 0.00011 0.014 8.6 0.0 237 272 630 662 608 668 0.82 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_97 - 326 ADH_zinc_N_2 PF13602.1 127 4.1e-23 75.9 0.1 1 1 6.1e-25 7.9e-23 75.0 0.1 5 127 185 322 183 322 0.82 # 82792 # 83769 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_11 - 883 MobB PF03205.9 140 0.00098 12.1 0.1 1 1 2.7e-05 0.0035 10.3 0.0 4 37 483 515 481 523 0.79 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_97 - 326 ADH_zinc_N PF00107.21 130 2e-24 78.9 0.1 1 1 2.9e-26 3.7e-24 78.0 0.1 1 122 151 272 151 280 0.93 # 82792 # 83769 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_52 - 699 Zeta_toxin PF06414.7 201 0.00057 12.3 0.0 1 1 1.6e-05 0.001 11.4 0.0 19 64 522 569 518 593 0.84 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_122 - 716 Zeta_toxin PF06414.7 201 0.001 11.4 0.0 1 1 6.8e-05 0.0044 9.4 0.0 21 49 190 219 182 236 0.85 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_80 - 467 NAD_binding_8 PF13450.1 68 6.5e-09 29.0 5.0 1 3 1.4e-07 1.7e-05 18.1 1.3 1 36 9 43 9 59 0.90 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 NAD_binding_8 PF13450.1 68 6.5e-09 29.0 5.0 2 3 0.086 11 -0.5 0.0 12 30 70 88 60 104 0.80 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 NAD_binding_8 PF13450.1 68 6.5e-09 29.0 5.0 3 3 9.9e-05 0.013 8.9 0.0 1 31 178 208 178 210 0.96 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 FAD_binding_3 PF01494.14 356 3.6e-07 22.7 5.5 1 2 7.7e-08 9.9e-06 18.0 0.2 2 34 5 37 4 39 0.94 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 FAD_binding_3 PF01494.14 356 3.6e-07 22.7 5.5 2 2 0.00019 0.024 6.9 0.1 3 32 175 204 173 212 0.92 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_52 - 699 SMC_N PF02463.14 220 2e-07 23.7 0.0 1 1 2.4e-08 3.1e-06 19.8 0.0 136 209 629 696 515 698 0.79 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_122 - 716 AAA_16 PF13191.1 185 5.5e-06 19.7 0.0 1 1 5.8e-07 2.5e-05 17.6 0.0 21 60 182 222 179 263 0.81 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 699 AAA_16 PF13191.1 185 0.0001 15.6 0.0 1 1 1.4e-05 0.00059 13.1 0.0 23 52 518 547 506 571 0.78 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_16 - 72 AAA_16 PF13191.1 185 0.00031 14.0 0.1 1 1 7.1e-06 0.00031 14.0 0.1 26 51 39 64 19 71 0.85 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_52 - 699 AAA_23 PF13476.1 202 0.00059 13.5 0.1 1 1 8.8e-06 0.0011 12.5 0.1 22 43 522 543 515 574 0.84 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_52 - 699 AAA_18 PF13238.1 129 9.6e-05 16.0 0.0 1 1 1.5e-06 0.00019 15.0 0.0 1 21 522 542 522 581 0.80 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_45 - 402 CbiA PF01656.18 195 2.9e-18 59.2 0.0 1 1 4.6e-20 6e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 31934 # 33139 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_16 - 72 AAA_14 PF13173.1 128 0.0011 12.2 0.1 1 2 0.063 8.1 -0.4 0.0 78 98 17 36 11 42 0.72 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_16 - 72 AAA_14 PF13173.1 128 0.0011 12.2 0.1 2 2 2.5e-05 0.0032 10.7 0.0 6 28 41 63 36 69 0.84 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_80 - 467 HI0933_like PF03486.9 409 1.3e-10 33.5 3.9 1 3 7.2e-08 9.3e-06 17.5 0.4 1 32 5 36 5 41 0.93 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 HI0933_like PF03486.9 409 1.3e-10 33.5 3.9 2 3 0.0032 0.42 2.2 0.0 135 165 114 146 83 164 0.70 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 HI0933_like PF03486.9 409 1.3e-10 33.5 3.9 3 3 2e-06 0.00026 12.7 0.0 82 176 188 285 181 304 0.80 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_52 - 699 AAA_29 PF13555.1 62 1.4e-05 17.8 0.3 1 1 2.8e-07 3.6e-05 16.6 0.3 18 51 515 547 508 555 0.76 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_80 - 467 FAD_binding_2 PF00890.19 417 4.6e-11 35.4 9.5 1 4 1.4e-10 1.9e-08 26.8 0.9 1 33 6 38 6 46 0.89 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 FAD_binding_2 PF00890.19 417 4.6e-11 35.4 9.5 2 4 0.00017 0.022 6.8 0.0 175 219 119 162 87 170 0.78 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 FAD_binding_2 PF00890.19 417 4.6e-11 35.4 9.5 3 4 0.04 5.2 -1.0 0.1 2 31 176 205 175 208 0.78 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 FAD_binding_2 PF00890.19 417 4.6e-11 35.4 9.5 4 4 0.00062 0.08 4.9 0.0 376 404 293 315 290 323 0.85 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_52 - 699 AAA PF00004.24 132 3.6e-05 17.2 0.2 1 1 7.2e-06 0.00093 12.7 0.2 3 74 524 663 522 689 0.70 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_80 - 467 Thi4 PF01946.12 230 5.6e-06 18.8 0.5 1 1 1.1e-07 1.4e-05 17.5 0.0 17 55 4 41 2 93 0.90 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 Pyr_redox_3 PF13738.1 203 2.2e-09 30.9 0.1 1 1 4.3e-11 5.6e-09 29.6 0.1 1 182 8 188 8 207 0.62 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_52 - 699 DUF258 PF03193.11 161 0.00049 12.6 0.1 1 1 7.1e-06 0.00092 11.7 0.1 36 66 520 550 504 555 0.85 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_122 - 716 TraG-D_C PF12696.2 128 9.2e-21 67.3 0.0 1 1 1.3e-22 1.7e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_45 - 402 AAA_31 PF13614.1 157 0.00058 13.1 0.1 1 2 0.071 9.1 -0.6 0.0 12 61 120 174 110 209 0.55 # 31934 # 33139 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_45 - 402 AAA_31 PF13614.1 157 0.00058 13.1 0.1 2 2 3.1e-05 0.004 10.3 0.0 108 147 235 273 231 279 0.86 # 31934 # 33139 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_52 - 699 NTPase_1 PF03266.10 168 0.00098 12.1 0.2 1 1 1.5e-05 0.0019 11.2 0.2 2 23 522 543 521 565 0.85 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_40 - 227 Methyltransf_26 PF13659.1 117 1.4e-10 34.5 0.0 1 2 1.4e-07 1.8e-05 18.0 0.0 60 114 10 71 3 74 0.69 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_40 - 227 Methyltransf_26 PF13659.1 117 1.4e-10 34.5 0.0 2 2 1.8e-06 0.00024 14.4 0.0 4 34 167 196 164 221 0.80 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_80 - 467 2-Hacid_dh_C PF02826.14 178 0.00012 14.5 0.1 1 2 0.072 9.2 -1.4 0.2 39 68 7 36 4 43 0.90 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 2-Hacid_dh_C PF02826.14 178 0.00012 14.5 0.1 2 2 4.1e-06 0.00053 12.4 0.0 29 70 166 207 154 225 0.79 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 XdhC_C PF13478.1 136 2.9e-06 20.9 0.0 1 2 0.0036 0.46 4.1 0.0 1 30 7 36 7 95 0.74 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 XdhC_C PF13478.1 136 2.9e-06 20.9 0.0 2 2 2.1e-06 0.00027 14.5 0.0 1 41 176 216 176 242 0.86 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_121 - 1748 AAA_30 PF13604.1 196 6.3e-46 149.7 11.3 1 2 4e-06 0.00017 14.5 2.0 8 144 420 548 418 559 0.82 # 104246 # 109489 # -1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_121 - 1748 AAA_30 PF13604.1 196 6.3e-46 149.7 11.3 2 2 3.8e-44 1.6e-42 138.5 0.9 1 191 967 1160 967 1163 0.94 # 104246 # 109489 # -1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_52 - 699 AAA_30 PF13604.1 196 0.00038 13.3 0.1 1 1 2e-05 0.00087 12.1 0.0 17 50 518 551 512 559 0.81 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_122 - 716 AAA_30 PF13604.1 196 0.00071 12.4 0.0 1 1 3.8e-05 0.0016 11.3 0.0 21 57 188 224 180 230 0.85 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_11 - 883 FtsK_SpoIIIE PF01580.13 205 3.7e-05 16.5 0.1 1 2 2e-06 0.00026 13.7 0.0 39 63 476 504 463 507 0.84 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_11 - 883 FtsK_SpoIIIE PF01580.13 205 3.7e-05 16.5 0.1 2 2 0.035 4.5 -0.1 0.0 76 166 531 625 529 632 0.78 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_80 - 467 Lycopene_cycl PF05834.7 374 0.00015 14.0 1.1 1 2 3.1e-05 0.004 9.3 0.8 1 34 6 37 6 155 0.68 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 Lycopene_cycl PF05834.7 374 0.00015 14.0 1.1 2 2 0.0097 1.3 1.1 0.0 2 40 176 211 175 219 0.90 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_52 - 699 ABC_tran PF00005.22 137 2.6e-33 108.5 0.0 1 1 3.8e-35 4.9e-33 107.6 0.0 4 137 512 658 509 658 0.92 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_80 - 467 K_oxygenase PF13434.1 341 4.6e-08 25.5 0.0 1 1 6.1e-10 7.8e-08 24.8 0.0 130 234 120 215 98 272 0.82 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_40 - 227 Cons_hypoth95 PF03602.10 183 0.00011 14.9 0.0 1 2 0.00051 0.065 5.8 0.0 113 128 19 34 11 81 0.67 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_40 - 227 Cons_hypoth95 PF03602.10 183 0.00011 14.9 0.0 2 2 0.00021 0.027 7.1 0.0 41 61 162 182 144 213 0.83 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_121 - 1748 AAA_19 PF13245.1 76 1.3e-07 24.6 1.8 1 1 7.3e-09 3.1e-07 23.4 0.3 7 76 980 1046 973 1046 0.78 # 104246 # 109489 # -1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_16 - 72 AAA_19 PF13245.1 76 0.00022 14.3 0.0 1 1 5.8e-06 0.00025 14.1 0.0 15 42 42 68 29 71 0.79 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_52 - 699 AAA_19 PF13245.1 76 0.00035 13.6 0.3 1 1 2e-05 0.00085 12.4 0.3 9 48 519 552 513 561 0.74 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_16 - 72 DUF463 PF04317.7 443 0.0012 10.7 0.0 1 1 1.2e-05 0.0015 10.3 0.0 4 30 41 67 39 71 0.89 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_11 - 883 AAA_10 PF12846.2 304 1.7e-49 162.1 0.0 1 1 9.2e-51 3e-49 161.3 0.0 1 294 479 768 479 774 0.87 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_122 - 716 AAA_10 PF12846.2 304 1.2e-10 34.5 0.0 1 1 1.1e-10 3.6e-09 29.7 0.0 3 296 187 494 186 499 0.71 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 699 AAA_10 PF12846.2 304 0.00019 14.1 0.2 1 1 1.8e-05 0.00058 12.6 0.1 3 22 521 540 519 558 0.86 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_16 - 72 AAA_10 PF12846.2 304 0.00052 12.7 0.1 1 2 0.0022 0.071 5.7 0.0 269 286 12 33 2 37 0.75 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_16 - 72 AAA_10 PF12846.2 304 0.00052 12.7 0.1 2 2 0.0022 0.07 5.7 0.0 2 29 38 65 37 69 0.87 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_52 - 699 SbcCD_C PF13558.1 90 0.0011 12.2 0.2 1 1 5.4e-05 0.007 9.6 0.2 18 81 615 665 603 674 0.68 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_80 - 467 FAD_oxidored PF12831.2 428 6e-12 38.5 3.2 1 1 1.1e-13 1.4e-11 37.3 3.2 1 147 6 144 6 145 0.63 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 DAO PF01266.19 358 1.2e-10 34.0 10.6 1 4 2.2e-07 2.8e-05 16.4 2.0 1 35 6 40 6 70 0.89 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 DAO PF01266.19 358 1.2e-10 34.0 10.6 2 4 3.3e-06 0.00042 12.5 0.3 150 206 95 150 48 160 0.83 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 DAO PF01266.19 358 1.2e-10 34.0 10.6 3 4 0.011 1.4 0.9 0.1 2 29 176 203 175 208 0.71 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 DAO PF01266.19 358 1.2e-10 34.0 10.6 4 4 0.00016 0.02 6.9 0.0 154 203 221 274 212 302 0.87 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_16 - 72 ResIII PF04851.10 184 0.00086 12.4 0.0 1 1 7.9e-06 0.001 12.2 0.0 6 51 13 63 9 69 0.84 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_52 - 699 DUF3584 PF12128.3 1201 0.0027 8.3 0.2 1 1 2.8e-05 0.0037 7.8 0.2 16 37 518 539 510 559 0.86 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_16 - 72 Viral_helicase1 PF01443.13 234 0.00079 12.2 0.1 1 1 8.5e-06 0.0011 11.7 0.1 3 29 42 66 40 70 0.83 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_16 - 72 DUF2075 PF09848.4 352 3e-05 16.3 0.0 1 1 2.7e-07 3.5e-05 16.1 0.0 4 30 40 66 37 71 0.78 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_80 - 467 NAD_binding_9 PF13454.1 156 0.0094 9.0 3.5 1 2 0.0047 0.61 3.1 0.4 2 19 9 26 8 44 0.79 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 NAD_binding_9 PF13454.1 156 0.0094 9.0 3.5 2 2 0.00049 0.064 6.3 0.2 113 155 103 145 88 146 0.77 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 Pyr_redox PF00070.22 80 3.1e-24 78.5 0.4 1 3 0.00011 0.014 9.1 0.2 2 31 7 36 6 38 0.95 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 Pyr_redox PF00070.22 80 3.1e-24 78.5 0.4 2 3 0.022 2.9 1.7 0.0 23 64 105 148 86 154 0.59 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 Pyr_redox PF00070.22 80 3.1e-24 78.5 0.4 3 3 1.1e-21 1.5e-19 63.5 0.0 1 73 175 248 175 258 0.93 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_122 - 716 TrwB_AAD_bind PF10412.4 386 3.4e-150 493.2 0.0 1 1 9.7e-152 4.2e-150 492.8 0.0 2 386 172 561 171 561 0.99 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_11 - 883 TrwB_AAD_bind PF10412.4 386 7.1e-07 21.3 0.2 1 2 6.9e-08 3e-06 19.3 0.0 15 53 479 517 470 552 0.81 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_11 - 883 TrwB_AAD_bind PF10412.4 386 7.1e-07 21.3 0.2 2 2 0.095 4.1 -0.9 0.0 261 317 713 769 707 772 0.92 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_16 - 72 TrwB_AAD_bind PF10412.4 386 0.0013 10.6 0.0 1 1 4.3e-05 0.0018 10.1 0.0 15 44 37 66 26 69 0.84 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_121 - 1748 AAA_11 PF13086.1 236 0.00021 14.1 1.1 1 1 1e-05 0.00065 12.6 0.0 2 75 968 1038 967 1059 0.81 # 104246 # 109489 # -1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_16 - 72 AAA_11 PF13086.1 236 0.00061 12.6 0.0 1 1 9.5e-06 0.00061 12.6 0.0 20 43 40 63 14 71 0.76 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_122 - 716 T4SS-DNA_transf PF02534.9 469 8.8e-10 30.9 0.0 1 2 0.058 3.7 -0.8 0.0 127 188 259 318 198 352 0.70 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_122 - 716 T4SS-DNA_transf PF02534.9 469 8.8e-10 30.9 0.0 2 2 6.8e-11 4.4e-09 28.6 0.0 270 361 388 476 364 500 0.76 # 109584 # 111731 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_11 - 883 T4SS-DNA_transf PF02534.9 469 0.00024 13.0 0.0 1 2 0.0019 0.12 4.0 0.0 105 185 533 607 470 622 0.85 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_11 - 883 T4SS-DNA_transf PF02534.9 469 0.00024 13.0 0.0 2 2 0.00033 0.021 6.6 0.0 321 378 713 769 665 771 0.93 # 5709 # 8357 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_40 - 227 MethyltransfD12 PF02086.10 260 0.00071 12.3 0.0 1 2 0.02 2.6 0.6 0.0 177 188 20 31 11 86 0.88 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_40 - 227 MethyltransfD12 PF02086.10 260 0.00071 12.3 0.0 2 2 3.9e-05 0.005 9.5 0.0 15 46 156 189 148 214 0.82 # 26790 # 27470 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_16 - 72 ArgK PF03308.11 267 4.2e-05 15.7 0.0 1 1 3.4e-07 4.3e-05 15.6 0.0 25 59 33 67 17 70 0.82 # 10081 # 10296 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_80 - 467 AlaDh_PNT_C PF01262.16 168 0.00062 12.6 0.1 1 2 0.026 3.4 0.5 0.2 23 47 7 31 4 37 0.87 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_80 - 467 AlaDh_PNT_C PF01262.16 168 0.00062 12.6 0.1 2 2 5.1e-05 0.0065 9.3 0.0 14 60 167 213 162 238 0.87 # 61545 # 62945 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.463 1_52 - 699 AAA_25 PF13481.1 194 0.00044 12.9 0.0 1 1 6.5e-06 0.00084 12.0 0.0 30 55 516 541 489 601 0.79 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_52 - 699 AAA_28 PF13521.1 163 0.00042 13.6 0.5 1 1 6.4e-06 0.00082 12.6 0.5 2 19 522 539 521 553 0.91 # 39104 # 41200 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/54913205-f8ac-41d5-8fe8-59560cff6e96 # Target file: checkm_output/bins/pm344/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm344/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/54913205-f8ac-41d5-8fe8-59560cff6e96 checkm_output/bins/pm344/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:01 2020 # [ok]