# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_48 - 143 Limkain-b1 PF11608.3 91 0.00062 12.6 0.0 1 1 8.2e-06 0.00091 12.1 0.0 41 74 13 46 7 68 0.89 # 35441 # 35869 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_92 - 72 cobW PF02492.14 178 0.00016 14.2 0.0 1 1 1.9e-06 0.00021 13.8 0.0 5 25 42 66 39 71 0.77 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_15 - 402 MipZ PF09140.6 261 6.3e-06 18.4 0.0 1 2 0.0025 0.28 3.2 0.0 3 50 111 163 109 201 0.73 # 9549 # 10754 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_15 - 402 MipZ PF09140.6 261 6.3e-06 18.4 0.0 2 2 2.8e-06 0.00031 12.9 0.0 87 136 233 282 220 305 0.87 # 9549 # 10754 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_111 - 71 SSB PF00436.20 104 2.3e-25 81.6 0.5 1 1 4.8e-27 2.6e-25 81.4 0.5 44 99 2 57 1 60 0.97 # 86402 # 86614 # -1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_1 - 36 SSB PF00436.20 104 8.3e-12 38.0 0.0 1 1 1.6e-13 8.9e-12 37.9 0.0 1 31 6 36 6 36 0.98 # 3 # 110 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.574 1_69 - 1753 UvrD_C_2 PF13538.1 104 3.2e-07 23.5 0.3 1 1 3.5e-08 3.9e-06 20.1 0.1 3 102 1337 1440 1335 1442 0.78 # 50966 # 56224 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_86 - 701 DUF87 PF01935.12 229 9e-08 25.2 0.0 1 1 7.4e-09 4.1e-07 23.1 0.0 26 221 300 486 286 494 0.75 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_26 - 323 DUF87 PF01935.12 229 0.00066 12.6 0.2 1 1 0.0001 0.0058 9.5 0.0 26 52 43 69 40 73 0.85 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 NB-ARC PF00931.17 287 0.00044 12.2 0.3 1 1 5.9e-06 0.00066 11.6 0.3 8 104 29 126 22 144 0.74 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 AAA_22 PF13401.1 131 5.5e-16 52.0 0.3 1 1 2.2e-17 1.2e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_92 - 72 AAA_22 PF13401.1 131 0.00042 13.5 0.0 1 2 0.07 3.9 0.7 0.0 106 126 17 37 5 40 0.82 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_92 - 72 AAA_22 PF13401.1 131 0.00042 13.5 0.0 2 2 2.8e-05 0.0016 11.7 0.0 6 31 39 64 29 69 0.84 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_26 - 323 PRK PF00485.13 194 0.00037 13.1 0.0 1 1 7e-06 0.00078 12.1 0.0 1 38 42 81 42 132 0.66 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 227 N6_N4_Mtase PF01555.13 231 4e-32 104.6 0.0 1 1 1.8e-31 1.9e-29 95.8 0.0 1 227 21 199 21 203 0.91 # 4405 # 5085 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_26 - 323 AAA_17 PF13207.1 121 0.00016 15.5 0.1 1 1 3.4e-06 0.00038 14.4 0.0 1 40 42 89 42 186 0.63 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 MobB PF03205.9 140 0.00035 13.3 0.1 1 1 2.2e-05 0.0012 11.6 0.0 2 31 42 70 41 86 0.78 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_86 - 701 MobB PF03205.9 140 0.00071 12.4 0.1 1 1 4.1e-05 0.0023 10.7 0.0 4 37 301 333 299 341 0.79 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_26 - 323 T2SE PF00437.15 272 3e-06 19.3 0.7 1 1 1.3e-07 1.5e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 Arch_ATPase PF01637.13 234 4.1e-05 16.4 0.2 1 1 8.6e-07 9.5e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 AAA_16 PF13191.1 185 4e-11 36.3 1.2 1 1 1.4e-11 5e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_70 - 745 AAA_16 PF13191.1 185 0.00017 14.6 0.0 1 1 1.9e-05 0.0007 12.6 0.0 21 55 182 216 179 253 0.85 # 56224 # 58458 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_92 - 72 AAA_16 PF13191.1 185 0.00026 14.0 0.1 1 1 7.1e-06 0.00026 14.0 0.1 26 51 39 64 19 71 0.85 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 109 AAA_23 PF13476.1 202 0.034 7.5 21.3 1 1 0.00033 0.037 7.4 21.3 135 184 37 82 10 96 0.43 # 605 # 931 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_26 - 323 AAA_18 PF13238.1 129 0.0001 15.7 0.0 1 1 1.7e-06 0.00019 14.8 0.0 1 23 43 90 43 138 0.67 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_15 - 402 CbiA PF01656.18 195 2.5e-18 59.2 0.0 1 1 4.6e-20 5.1e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 9549 # 10754 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_26 - 323 KaiC PF06745.8 227 0.00022 13.4 0.1 1 1 4.3e-06 0.00048 12.3 0.1 12 43 33 63 27 149 0.80 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 AAA_14 PF13173.1 128 4.5e-06 19.6 0.0 1 1 3.5e-07 1.9e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_92 - 72 AAA_14 PF13173.1 128 0.00092 12.2 0.1 1 1 5e-05 0.0028 10.7 0.0 6 28 41 63 36 69 0.84 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_26 - 323 AAA PF00004.24 132 1.7e-06 21.3 0.0 1 1 3.5e-08 3.9e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_70 - 745 TraG-D_C PF12696.2 128 1.3e-20 66.6 0.0 1 1 4.4e-22 4.9e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 56224 # 58458 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_15 - 402 AAA_31 PF13614.1 157 0.0005 13.1 0.1 1 2 0.071 7.9 -0.6 0.0 12 61 120 174 110 209 0.55 # 9549 # 10754 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_15 - 402 AAA_31 PF13614.1 157 0.0005 13.1 0.1 2 2 3.1e-05 0.0035 10.3 0.0 108 147 235 273 231 279 0.86 # 9549 # 10754 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_26 - 323 AAA_33 PF13671.1 143 0.00018 14.5 0.0 1 1 3.7e-06 0.00041 13.3 0.0 1 45 42 100 42 132 0.60 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 227 Methyltransf_26 PF13659.1 117 3e-09 30.0 0.0 1 2 1.4e-07 1.6e-05 18.0 0.0 60 114 10 71 3 74 0.69 # 4405 # 5085 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_9 - 227 Methyltransf_26 PF13659.1 117 3e-09 30.0 0.0 2 2 4.5e-05 0.005 10.0 0.0 4 34 167 196 164 221 0.80 # 4405 # 5085 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_69 - 1753 AAA_30 PF13604.1 196 3.7e-41 133.9 22.1 1 3 0.038 2.1 0.9 0.0 41 86 223 269 218 282 0.84 # 50966 # 56224 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_69 - 1753 AAA_30 PF13604.1 196 3.7e-41 133.9 22.1 2 3 1.8e-05 0.00099 11.8 1.9 9 133 421 539 419 559 0.79 # 50966 # 56224 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_69 - 1753 AAA_30 PF13604.1 196 3.7e-41 133.9 22.1 3 3 7.9e-43 4.4e-41 133.6 1.0 1 191 967 1160 967 1163 0.95 # 50966 # 56224 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_26 - 323 AAA_30 PF13604.1 196 0.00018 14.2 0.3 1 1 9.7e-06 0.00054 12.6 0.3 15 128 38 164 27 170 0.55 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_86 - 701 FtsK_SpoIIIE PF01580.13 205 2e-05 17.2 0.1 1 2 1.6e-06 0.00017 14.1 0.0 39 63 294 322 281 325 0.84 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_86 - 701 FtsK_SpoIIIE PF01580.13 205 2e-05 17.2 0.1 2 2 0.025 2.8 0.4 0.0 76 166 349 443 347 451 0.78 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_26 - 323 ABC_tran PF00005.22 137 7.9e-06 19.3 0.1 1 1 1.4e-07 1.5e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_69 - 1753 AAA_19 PF13245.1 76 4.1e-05 16.4 1.7 1 1 3.1e-06 0.00011 15.0 0.4 7 76 980 1046 973 1046 0.77 # 50966 # 56224 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_26 - 323 AAA_19 PF13245.1 76 7.1e-05 15.6 0.2 1 1 9.8e-06 0.00036 13.3 0.1 6 37 36 67 32 119 0.75 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_92 - 72 AAA_19 PF13245.1 76 0.00019 14.3 0.0 1 1 5.8e-06 0.00021 14.1 0.0 15 42 42 68 29 71 0.79 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_92 - 72 DUF463 PF04317.7 443 0.001 10.7 0.0 1 1 1.2e-05 0.0013 10.3 0.0 4 30 41 67 39 71 0.89 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_86 - 701 AAA_10 PF12846.2 304 1e-49 162.6 0.0 1 1 5.6e-51 1.6e-49 162.0 0.0 1 294 297 586 297 592 0.87 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_70 - 745 AAA_10 PF12846.2 304 8.3e-07 21.7 0.0 1 2 0.0055 0.15 4.4 0.0 3 43 187 227 186 239 0.93 # 56224 # 58458 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_70 - 745 AAA_10 PF12846.2 304 8.3e-07 21.7 0.0 2 2 4.5e-06 0.00013 14.5 0.0 200 295 397 493 279 498 0.83 # 56224 # 58458 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_26 - 323 AAA_10 PF12846.2 304 1.1e-06 21.3 0.1 1 2 1.7e-05 0.00046 12.7 0.0 3 34 42 73 40 106 0.73 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 AAA_10 PF12846.2 304 1.1e-06 21.3 0.1 2 2 0.0025 0.071 5.5 0.0 216 245 120 150 79 207 0.83 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_92 - 72 AAA_10 PF12846.2 304 0.00045 12.7 0.1 1 2 0.0022 0.061 5.7 0.0 269 286 12 33 2 37 0.75 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_92 - 72 AAA_10 PF12846.2 304 0.00045 12.7 0.1 2 2 0.0022 0.06 5.7 0.0 2 29 38 65 37 69 0.87 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_26 - 323 ResIII PF04851.10 184 1.1e-05 18.4 0.2 1 2 3.4e-05 0.0019 11.1 0.3 29 101 44 110 20 121 0.72 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 ResIII PF04851.10 184 1.1e-05 18.4 0.2 2 2 0.0012 0.064 6.1 0.0 131 162 109 140 96 153 0.63 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_92 - 72 ResIII PF04851.10 184 0.00074 12.4 0.0 1 1 1.6e-05 0.00087 12.2 0.0 6 51 13 63 9 69 0.84 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_21 - 372 DUF3584 PF12128.3 1201 0.076 3.3 61.1 1 1 0.0075 0.83 -0.2 61.1 261 533 79 352 69 366 0.61 # 13786 # 14901 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_92 - 72 Viral_helicase1 PF01443.13 234 0.00068 12.2 0.1 1 1 8.5e-06 0.00095 11.7 0.1 3 29 42 66 40 70 0.83 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_26 - 323 DUF2075 PF09848.4 352 2e-06 20.0 0.1 1 1 5.2e-08 2.9e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_92 - 72 DUF2075 PF09848.4 352 2.6e-05 16.3 0.0 1 1 5.4e-07 3e-05 16.1 0.0 4 30 40 66 37 71 0.78 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_70 - 745 TrwB_AAD_bind PF10412.4 386 4e-144 473.0 0.0 1 1 1.8e-145 5e-144 472.6 0.0 2 386 172 561 171 561 0.99 # 56224 # 58458 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_86 - 701 TrwB_AAD_bind PF10412.4 386 3.8e-07 22.0 0.2 1 2 6.9e-08 1.9e-06 19.7 0.0 15 53 297 335 288 370 0.81 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_86 - 701 TrwB_AAD_bind PF10412.4 386 3.8e-07 22.0 0.2 2 2 0.095 2.6 -0.5 0.0 261 317 531 587 525 590 0.92 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_26 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.4 0.5 1 2 6.6e-05 0.0018 9.9 0.0 14 44 39 69 35 76 0.83 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.4 0.5 2 2 0.085 2.3 -0.3 0.0 234 275 115 158 112 169 0.78 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_92 - 72 TrwB_AAD_bind PF10412.4 386 0.0011 10.6 0.0 1 1 5.7e-05 0.0016 10.1 0.0 15 44 37 66 26 69 0.84 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_92 - 72 AAA_11 PF13086.1 236 0.00053 12.6 0.0 1 1 9.5e-06 0.00053 12.6 0.0 20 43 40 63 14 71 0.76 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 109 AAA_11 PF13086.1 236 0.075 5.6 15.3 1 1 0.0014 0.077 5.5 15.3 98 159 34 96 17 108 0.46 # 605 # 931 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_70 - 745 T4SS-DNA_transf PF02534.9 469 5.6e-12 37.9 0.0 1 1 2.4e-13 1.3e-11 36.7 0.0 283 391 398 505 378 542 0.81 # 56224 # 58458 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_86 - 701 T4SS-DNA_transf PF02534.9 469 0.00011 13.9 0.0 1 2 0.0014 0.076 4.5 0.0 105 185 351 425 288 441 0.85 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_86 - 701 T4SS-DNA_transf PF02534.9 469 0.00011 13.9 0.0 2 2 0.00024 0.014 7.0 0.0 321 378 531 587 483 589 0.93 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_92 - 72 ArgK PF03308.11 267 3.6e-05 15.7 0.0 1 1 3.4e-07 3.7e-05 15.6 0.0 25 59 33 67 17 70 0.82 # 74882 # 75097 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_86 - 701 Pox_A32 PF04665.7 241 0.0009 11.6 0.0 1 1 1.8e-05 0.002 10.5 0.0 7 38 291 322 287 337 0.85 # 70511 # 72613 # -1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_26 - 323 PIF1 PF05970.9 364 3.2e-05 16.0 0.0 1 1 6.3e-07 7e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 UPF0079 PF02367.12 123 0.00013 14.7 0.0 1 1 2.2e-06 0.00024 13.8 0.0 3 45 28 70 26 114 0.84 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_111 - 71 tRNA_anti-codon PF01336.20 75 0.00039 13.3 0.1 1 1 4.1e-06 0.00045 13.2 0.1 30 61 9 47 2 60 0.79 # 86402 # 86614 # -1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_26 - 323 NACHT PF05729.7 166 0.00053 12.7 0.2 1 1 1.1e-05 0.0013 11.5 0.2 1 28 41 68 41 140 0.77 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 323 AAA_5 PF07728.9 139 8.9e-05 15.3 0.1 1 1 7e-06 0.00078 12.2 0.2 5 90 46 149 43 152 0.85 # 19448 # 20416 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6c7286de-8adf-4459-9f99-2069135cc032 # Target file: checkm_output/bins/pm343/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm343/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6c7286de-8adf-4459-9f99-2069135cc032 checkm_output/bins/pm343/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:05:03 2020 # [ok]