# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_2 - 207 cobW PF02492.14 178 0.00031 13.4 0.2 1 2 1.8e-05 0.0023 10.6 0.0 10 38 12 41 3 47 0.86 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 cobW PF02492.14 178 0.00031 13.4 0.2 2 2 0.019 2.4 0.7 0.1 114 146 115 147 71 170 0.78 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_3 - 526 Seryl_tRNA_N PF02403.17 108 0.00096 12.4 8.8 1 3 0.0038 0.47 3.8 0.1 39 104 227 293 206 297 0.90 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_3 - 526 Seryl_tRNA_N PF02403.17 108 0.00096 12.4 8.8 2 3 0.0012 0.15 5.4 0.1 27 59 324 356 312 377 0.85 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_3 - 526 Seryl_tRNA_N PF02403.17 108 0.00096 12.4 8.8 3 3 0.00086 0.11 5.8 1.7 17 107 396 485 390 486 0.75 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_20 - 344 IstB_IS21 PF01695.12 178 0.00083 12.0 0.0 1 1 1.4e-05 0.0017 11.0 0.0 45 66 161 182 144 186 0.92 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 4_2 - 207 MipZ PF09140.6 261 2.2e-14 46.3 0.8 1 2 3.7e-11 1.6e-09 30.4 0.0 2 47 3 47 2 61 0.88 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 MipZ PF09140.6 261 2.2e-14 46.3 0.8 2 2 2.6e-06 0.00011 14.6 0.3 96 141 73 118 54 144 0.86 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 MipZ PF09140.6 261 1.9e-09 30.1 0.0 1 2 3.6e-08 1.5e-06 20.7 0.0 3 39 4 40 2 49 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 MipZ PF09140.6 261 1.9e-09 30.1 0.0 2 2 0.00043 0.018 7.3 0.0 96 128 148 180 137 198 0.82 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 2_41 - 402 MipZ PF09140.6 261 7.1e-06 18.4 0.0 1 2 0.0076 0.31 3.2 0.0 3 50 111 163 109 201 0.73 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 2_41 - 402 MipZ PF09140.6 261 7.1e-06 18.4 0.0 2 2 8.4e-06 0.00035 12.9 0.0 87 136 233 282 220 305 0.87 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_48 - 355 YhjQ PF06564.7 244 3.7e-12 39.3 0.0 1 2 3.3e-09 4.1e-07 22.8 0.0 1 45 1 45 1 52 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 YhjQ PF06564.7 244 3.7e-12 39.3 0.0 2 2 1.2e-06 0.00015 14.4 0.0 103 151 137 184 127 199 0.87 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 3_3 - 323 DUF87 PF01935.12 229 0.00074 12.6 0.2 1 3 5.2e-05 0.0065 9.5 0.0 26 52 43 69 40 73 0.85 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 DUF87 PF01935.12 229 0.00074 12.6 0.2 2 3 0.083 10 -1.0 0.0 135 194 79 139 68 151 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 DUF87 PF01935.12 229 0.00074 12.6 0.2 3 3 0.067 8.4 -0.7 0.0 121 195 198 299 171 308 0.59 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 NB-ARC PF00931.17 287 0.0005 12.2 0.3 1 1 5.9e-06 0.00074 11.6 0.3 8 104 29 126 22 144 0.74 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 AAA_22 PF13401.1 131 6.2e-16 52.0 0.3 1 1 2.2e-17 1.4e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 AAA_22 PF13401.1 131 0.00073 12.9 0.0 1 1 2.1e-05 0.0013 12.1 0.0 5 30 164 189 160 241 0.69 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 4_2 - 207 DUF1611 PF07755.6 301 4.2e-06 18.8 0.2 1 1 5.2e-08 6.5e-06 18.1 0.2 124 200 13 90 11 107 0.86 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 ATP_bind_1 PF03029.12 238 5.9e-05 15.9 0.0 1 1 2.5e-06 0.0001 15.1 0.0 6 42 12 48 10 74 0.85 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 ATP_bind_1 PF03029.12 238 0.00058 12.6 0.0 1 1 2e-05 0.00085 12.1 0.0 2 23 169 190 168 206 0.87 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_48 - 355 ATP_bind_1 PF03029.12 238 0.00062 12.5 0.1 1 1 9.7e-05 0.004 9.9 0.0 6 36 12 42 10 45 0.94 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 3_3 - 323 PRK PF00485.13 194 0.00042 13.1 0.0 1 1 7e-06 0.00087 12.1 0.0 1 38 42 81 42 132 0.66 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 SRP54 PF00448.17 196 0.00013 14.7 0.4 1 1 3.9e-06 0.00048 12.8 0.3 11 53 12 49 2 132 0.72 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 AAA_17 PF13207.1 121 5.7e-05 17.2 0.0 1 1 2.9e-06 0.00012 16.1 0.0 2 43 166 207 165 251 0.81 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 4_2 - 207 AAA_17 PF13207.1 121 0.0001 16.3 0.0 1 1 3.2e-06 0.00013 16.0 0.0 9 80 12 86 11 180 0.71 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_3 - 323 AAA_17 PF13207.1 121 0.00018 15.5 0.1 1 1 1e-05 0.00042 14.4 0.0 1 40 42 89 42 186 0.63 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 MobB PF03205.9 140 3.3e-06 20.1 0.4 1 1 4.1e-07 1.7e-05 17.8 0.1 10 104 12 88 2 104 0.68 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 MobB PF03205.9 140 0.00016 14.6 0.0 1 1 6.4e-06 0.00027 13.9 0.0 2 42 165 204 164 227 0.86 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 MobB PF03205.9 140 0.0004 13.3 0.1 1 1 3.4e-05 0.0014 11.6 0.0 2 31 42 70 41 86 0.78 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 LpxK PF02606.9 326 6.6e-05 15.1 0.1 1 1 8.4e-07 0.0001 14.5 0.1 46 71 11 36 2 38 0.94 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 ArsA_ATPase PF02374.10 305 5.8e-11 35.1 0.1 1 2 9.1e-12 5.7e-10 31.9 0.1 5 46 6 47 1 61 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 ArsA_ATPase PF02374.10 305 5.8e-11 35.1 0.1 2 2 0.026 1.7 0.8 0.0 122 141 146 165 138 167 0.83 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 4_2 - 207 ArsA_ATPase PF02374.10 305 3.7e-08 25.9 0.2 1 1 9.7e-10 6e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 T2SE PF00437.15 272 1.9e-52 171.0 0.0 1 1 3.7e-54 2.3e-52 170.7 0.0 12 267 25 312 15 316 0.88 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 T2SE PF00437.15 272 3.3e-06 19.3 0.7 1 1 2.6e-07 1.6e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 Zeta_toxin PF06414.7 201 2.3e-05 16.7 0.0 1 1 3.2e-07 4e-05 16.0 0.0 10 59 156 208 148 234 0.82 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 4_2 - 207 VirC1 PF07015.6 231 1e-14 47.4 0.2 1 1 3.2e-16 2e-14 46.4 0.2 1 131 1 123 1 174 0.80 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 VirC1 PF07015.6 231 0.00016 14.0 0.1 1 1 7.8e-06 0.00049 12.4 0.0 1 40 1 40 1 46 0.89 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 4_2 - 207 Fer4_NifH PF00142.13 273 1.9e-06 20.4 0.0 1 1 5.5e-08 3.4e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 Fer4_NifH PF00142.13 273 4e-06 19.4 0.0 1 1 1e-07 6.2e-06 18.7 0.0 7 47 9 49 2 65 0.84 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 3_3 - 323 Arch_ATPase PF01637.13 234 4.6e-05 16.4 0.2 1 1 8.6e-07 0.00011 15.2 0.2 8 135 30 142 27 164 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 AAA_16 PF13191.1 185 4.5e-11 36.3 1.2 1 1 9.1e-12 5.7e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 AAA_16 PF13191.1 185 0.0013 12.0 0.0 1 1 2.8e-05 0.0018 11.5 0.0 22 54 161 194 148 302 0.75 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_20 - 344 AAA_23 PF13476.1 202 0.00049 13.7 0.2 1 1 7.3e-06 0.00091 12.8 0.2 21 38 165 182 155 185 0.88 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_18 PF13238.1 129 0.00011 15.7 0.0 1 1 1.7e-06 0.00021 14.8 0.0 1 23 43 90 43 138 0.67 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_3 - 526 AAA_13 PF13166.1 712 0.0033 9.1 17.5 1 2 2.3e-05 0.0028 9.3 2.9 365 468 251 356 202 376 0.54 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_3 - 526 AAA_13 PF13166.1 712 0.0033 9.1 17.5 2 2 0.00032 0.04 5.5 7.0 322 439 392 519 372 525 0.75 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_48 - 355 CbiA PF01656.18 195 1.8e-30 99.0 0.0 1 1 6.9e-32 2.9e-30 98.3 0.0 1 172 4 249 4 279 0.84 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 4_2 - 207 CbiA PF01656.18 195 1.2e-28 93.1 1.5 1 1 7.2e-30 3e-28 91.8 1.5 1 142 4 123 4 162 0.77 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_41 - 402 CbiA PF01656.18 195 2.8e-18 59.2 0.0 1 1 1.4e-19 5.8e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 3_3 - 323 KaiC PF06745.8 227 0.00024 13.4 0.1 1 1 8.6e-06 0.00054 12.3 0.1 12 43 33 63 27 149 0.80 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 KaiC PF06745.8 227 0.0012 11.2 0.1 1 1 3.5e-05 0.0022 10.3 0.1 8 37 152 181 147 187 0.88 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_14 PF13173.1 128 5.1e-06 19.6 0.0 1 1 1.7e-07 2.2e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 AAA_29 PF13555.1 62 0.00013 14.7 0.0 1 1 2.3e-06 0.00028 13.6 0.0 20 43 160 183 145 186 0.78 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA PF00004.24 132 1.9e-06 21.3 0.0 1 1 3.5e-08 4.4e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 DUF258 PF03193.11 161 0.0003 13.2 0.0 1 1 3.9e-06 0.00049 12.5 0.0 31 59 158 187 144 220 0.82 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_19 - 612 TraG-D_C PF12696.2 128 3.2e-27 88.1 0.0 1 1 4.3e-29 5.4e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 17383 # 19218 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 1_48 - 355 AAA_31 PF13614.1 157 9.1e-15 48.1 0.0 1 2 1.9e-11 7.7e-10 32.1 0.0 1 66 2 64 2 91 0.83 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 AAA_31 PF13614.1 157 9.1e-15 48.1 0.0 2 2 7.9e-06 0.00033 13.8 0.1 112 154 144 186 112 187 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 4_2 - 207 AAA_31 PF13614.1 157 2.2e-08 27.4 0.2 1 2 3e-08 1.2e-06 21.7 0.0 1 39 2 40 2 53 0.94 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 AAA_31 PF13614.1 157 2.2e-08 27.4 0.2 2 2 0.014 0.6 3.2 0.0 115 152 74 109 59 114 0.83 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_41 - 402 AAA_31 PF13614.1 157 0.00056 13.1 0.1 1 1 9.4e-05 0.0039 10.3 0.0 108 147 235 273 231 279 0.86 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 4_2 - 207 NTPase_1 PF03266.10 168 0.00039 13.4 0.1 1 2 1.1e-05 0.0014 11.5 0.0 7 58 10 66 5 94 0.80 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 NTPase_1 PF03266.10 168 0.00039 13.4 0.1 2 2 0.084 11 -1.0 0.1 76 99 149 172 119 176 0.66 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 AAA_33 PF13671.1 143 2.2e-05 17.6 0.0 1 1 1.5e-06 9.5e-05 15.5 0.0 2 25 166 191 165 257 0.69 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_33 PF13671.1 143 0.0002 14.5 0.0 1 1 7.3e-06 0.00046 13.3 0.0 1 45 42 100 42 132 0.60 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 AAA_30 PF13604.1 196 0.0002 14.2 0.3 1 1 9.7e-06 0.00061 12.6 0.3 15 128 38 164 27 170 0.55 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 AAA_30 PF13604.1 196 0.00038 13.3 0.6 1 1 1.5e-05 0.00092 12.0 0.1 26 106 10 88 2 97 0.75 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_3 - 323 ABC_tran PF00005.22 137 8.9e-06 19.3 0.1 1 1 2.7e-07 1.7e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 ABC_tran PF00005.22 137 6.7e-05 16.4 0.0 1 1 3e-06 0.00019 15.0 0.0 7 32 159 184 155 227 0.85 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_19 PF13245.1 76 8e-05 15.6 0.2 1 1 3.3e-06 0.00041 13.3 0.1 6 37 36 67 32 119 0.75 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_27 - 918 AAA_10 PF12846.2 304 2.5e-35 115.5 0.0 1 1 1e-36 4.3e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 25489 # 28242 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 3_3 - 323 AAA_10 PF12846.2 304 1.3e-06 21.3 0.1 1 2 1.3e-05 0.00052 12.7 0.0 3 34 42 73 40 106 0.73 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 AAA_10 PF12846.2 304 1.3e-06 21.3 0.1 2 2 0.0019 0.08 5.5 0.0 216 245 120 150 79 207 0.83 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 AAA_10 PF12846.2 304 1.6e-05 17.6 0.0 1 1 7e-07 2.9e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_3 - 323 ResIII PF04851.10 184 1.2e-05 18.4 0.2 1 2 1.7e-05 0.0022 11.1 0.3 29 101 44 110 20 121 0.72 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 ResIII PF04851.10 184 1.2e-05 18.4 0.2 2 2 0.00058 0.072 6.1 0.0 131 162 109 140 96 153 0.63 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_46 - 372 DUF3584 PF12128.3 1201 0.054 3.9 61.1 1 1 0.0042 0.52 0.6 61.0 261 533 79 352 68 366 0.56 # 35626 # 36741 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 3_3 - 323 DUF2075 PF09848.4 352 2.2e-06 20.0 0.1 1 1 2.6e-08 3.2e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 DEAD PF00270.24 169 0.0003 13.5 0.0 1 1 3.9e-06 0.00048 12.9 0.0 6 33 154 182 151 246 0.77 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_19 - 612 TrwB_AAD_bind PF10412.4 386 6e-21 67.6 0.0 1 1 1.5e-22 9.5e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 17383 # 19218 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 3_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 1 3 3.3e-05 0.0021 9.9 0.0 14 44 39 69 35 76 0.83 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 2 3 0.042 2.6 -0.3 0.0 234 275 115 158 112 169 0.78 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 3 3 0.073 4.6 -1.1 0.0 128 182 251 306 240 311 0.71 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_19 - 612 T4SS-DNA_transf PF02534.9 469 2.4e-145 477.8 0.0 1 1 2.4e-147 2.9e-145 477.5 0.0 2 461 102 571 101 578 0.98 # 17383 # 19218 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 4_2 - 207 ArgK PF03308.11 267 0.00013 14.0 0.0 1 1 5.1e-06 0.00032 12.7 0.0 39 72 12 45 5 53 0.90 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 ArgK PF03308.11 267 0.001 11.1 0.0 1 1 3.7e-05 0.0023 9.9 0.0 38 72 11 45 7 62 0.88 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 3_3 - 323 PIF1 PF05970.9 364 3.6e-05 16.0 0.0 1 1 6.3e-07 7.9e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 UPF0079 PF02367.12 123 0.00014 14.7 0.0 1 1 4.3e-06 0.00027 13.8 0.0 3 45 28 70 26 114 0.84 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 UPF0079 PF02367.12 123 0.00059 12.7 0.0 1 1 1.7e-05 0.0011 11.9 0.0 8 39 156 187 151 196 0.83 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 4_2 - 207 AAA_24 PF13479.1 213 0.0008 12.2 0.7 1 2 1.7e-05 0.0021 10.9 0.1 12 88 11 95 3 99 0.81 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 AAA_24 PF13479.1 213 0.0008 12.2 0.7 2 2 0.078 9.8 -1.1 0.0 168 206 118 156 115 164 0.79 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_9 - 129 BOF PF04076.8 103 8.2e-44 140.9 0.7 1 1 7.9e-46 9.9e-44 140.7 0.7 2 102 25 125 24 126 0.98 # 6955 # 7341 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 3_3 - 323 NACHT PF05729.7 166 0.0006 12.7 0.2 1 1 1.1e-05 0.0014 11.5 0.2 1 28 41 68 41 140 0.77 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 AAA_25 PF13481.1 194 0.00038 13.1 0.0 1 1 4.3e-06 0.00053 12.6 0.0 22 51 152 181 140 249 0.87 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_5 PF07728.9 139 0.0001 15.3 0.1 1 1 7e-06 0.00088 12.2 0.2 5 90 46 149 43 152 0.85 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0ba52392-83f6-4425-883b-b8db484ee26e # Target file: checkm_output/bins/pm327/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm327/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0ba52392-83f6-4425-883b-b8db484ee26e checkm_output/bins/pm327/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:51 2020 # [ok]