# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 228 UPF0020 PF01170.13 180 9.4e-06 17.6 0.0 1 2 0.00033 0.021 6.6 0.0 103 121 17 35 4 88 0.71 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 UPF0020 PF01170.13 180 9.4e-06 17.6 0.0 2 2 6.2e-05 0.0039 9.0 0.0 28 54 163 189 158 221 0.67 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_26 - 215 MipZ PF09140.6 261 1.5e-08 26.2 2.3 1 2 0.0008 0.051 4.8 0.5 7 25 8 26 2 38 0.71 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 MipZ PF09140.6 261 1.5e-08 26.2 2.3 2 2 9e-09 5.8e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_16 - 647 DUF87 PF01935.12 229 0.0006 11.9 0.3 1 1 2.3e-05 0.0015 10.6 0.3 26 42 37 53 22 56 0.85 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_22 PF13401.1 131 3.7e-05 16.2 0.5 1 1 6.2e-06 0.0004 12.8 0.5 5 100 35 176 31 208 0.59 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_15 PF13175.1 415 9.5e-05 13.8 0.0 1 2 0.00018 0.012 6.9 0.0 23 43 35 55 7 73 0.78 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_15 PF13175.1 415 9.5e-05 13.8 0.0 2 2 0.00093 0.06 4.5 0.0 371 413 164 205 152 207 0.89 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_34 - 228 N6_N4_Mtase PF01555.13 231 7.6e-37 119.2 0.0 1 2 1.9e-15 1.2e-13 43.3 0.0 1 114 21 124 21 141 0.88 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 N6_N4_Mtase PF01555.13 231 7.6e-37 119.2 0.0 2 2 5.6e-25 3.6e-23 74.5 0.0 169 228 141 200 127 203 0.90 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 647 AAA_17 PF13207.1 121 4.9e-05 16.5 0.6 1 1 2.6e-06 0.00017 14.7 0.6 2 18 37 53 36 140 0.85 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_21 PF13304.1 303 3.7e-11 35.7 0.1 1 2 5.1e-07 3.3e-05 16.2 0.2 2 22 37 57 36 120 0.81 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_21 PF13304.1 303 3.7e-11 35.7 0.1 2 2 2.4e-07 1.5e-05 17.3 0.0 236 298 144 203 87 206 0.93 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 MobB PF03205.9 140 0.00044 12.3 0.8 1 2 3e-05 0.0019 10.2 0.1 2 19 36 53 35 55 0.90 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 MobB PF03205.9 140 0.00044 12.3 0.8 2 2 0.055 3.5 -0.4 0.1 20 37 186 203 183 208 0.84 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 SMC_N PF02463.14 220 3.7e-07 21.8 0.2 1 2 0.00015 0.0095 7.4 0.3 25 42 35 52 24 58 0.84 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 SMC_N PF02463.14 220 3.7e-07 21.8 0.2 2 2 6.8e-06 0.00044 11.8 0.0 125 213 127 218 59 222 0.76 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_26 - 215 VirC1 PF07015.6 231 0.00026 12.4 0.0 1 2 0.00073 0.047 5.0 0.0 3 29 3 29 1 36 0.81 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 VirC1 PF07015.6 231 0.00026 12.4 0.0 2 2 0.00052 0.033 5.5 0.0 87 190 77 181 59 194 0.70 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_16 - 647 AAA_16 PF13191.1 185 4.5e-07 22.3 0.4 1 1 1.2e-07 7.4e-06 18.3 0.4 4 166 15 211 12 225 0.48 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_26 - 215 CbiA PF01656.18 195 7.9e-10 30.7 0.1 1 1 1.8e-11 1.1e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_16 - 647 AAA_29 PF13555.1 62 5.2e-07 21.5 0.0 1 1 2.1e-08 1.3e-06 20.2 0.0 22 43 33 54 23 71 0.80 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 MMR_HSR1 PF01926.18 116 0.00012 14.4 0.2 1 2 1.5e-05 0.00097 11.4 0.1 2 18 37 53 36 65 0.92 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 MMR_HSR1 PF01926.18 116 0.00012 14.4 0.2 2 2 0.064 4.1 -0.3 0.0 24 60 197 231 153 305 0.64 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 DUF258 PF03193.11 161 8e-06 17.4 0.4 1 2 7.1e-07 4.6e-05 14.9 0.2 32 55 31 54 7 63 0.83 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 DUF258 PF03193.11 161 8e-06 17.4 0.4 2 2 0.043 2.8 -0.6 0.0 52 101 187 232 167 248 0.64 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_53 - 310 TraG-D_C PF12696.2 128 3.8e-05 15.9 0.5 1 1 1.4e-06 8.6e-05 14.7 0.5 23 90 4 71 2 101 0.81 # 45900 # 46829 # -1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_16 - 647 AAA_33 PF13671.1 143 0.00068 11.8 0.3 1 1 4e-05 0.0026 9.9 0.3 1 17 36 52 36 215 0.87 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_34 - 228 Methyltransf_26 PF13659.1 117 5.6e-12 38.1 0.1 1 2 2.1e-07 1.3e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 Methyltransf_26 PF13659.1 117 5.6e-12 38.1 0.1 2 2 9.7e-08 6.2e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 647 FtsK_SpoIIIE PF01580.13 205 8.7e-05 14.3 0.2 1 1 3.7e-06 0.00024 12.9 0.2 33 58 29 54 17 57 0.81 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 ABC_tran PF00005.22 137 1.1e-31 102.2 0.0 1 1 3.8e-33 2.5e-31 101.1 0.0 1 136 24 172 24 173 0.88 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_34 - 228 Cons_hypoth95 PF03602.10 183 3.3e-06 18.9 0.0 1 2 0.00016 0.0099 7.5 0.0 112 168 18 76 8 83 0.68 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 Cons_hypoth95 PF03602.10 183 3.3e-06 18.9 0.0 2 2 4e-05 0.0026 9.4 0.0 41 62 162 183 145 218 0.78 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 647 AAA_10 PF12846.2 304 1.4e-05 16.9 0.0 1 1 8e-07 5.1e-05 15.0 0.0 4 28 37 62 35 68 0.77 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_50 - 108 Methyltransf_31 PF13847.1 152 0.00044 12.2 0.0 1 1 7.9e-06 0.0005 11.9 0.0 18 61 29 71 27 98 0.84 # 44851 # 45174 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_46 - 283 Methyltransf_27 PF13708.1 194 1.7e-67 219.0 0.0 1 1 3.6e-69 2.3e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 39887 # 40735 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_59 - 397 TIGR00344 TIGR00344 847 3.5e-05 14.1 0.7 1 1 8.3e-07 5.3e-05 13.5 0.7 681 778 189 283 180 296 0.78 # 52127 # 53317 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_34 - 228 MethyltransfD12 PF02086.10 260 0.00049 11.8 0.0 1 2 0.034 2.2 -0.1 0.0 175 188 18 31 10 89 0.79 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 MethyltransfD12 PF02086.10 260 0.00049 11.8 0.0 2 2 4e-05 0.0026 9.5 0.0 20 46 163 189 148 197 0.78 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_7 - 178 TIGR00922 TIGR00922 172 0.00068 11.5 0.0 1 1 1.3e-05 0.00084 11.2 0.0 55 103 61 109 32 142 0.81 # 4725 # 5258 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.438 1_16 - 647 AAA_25 PF13481.1 194 3.4e-05 15.6 0.1 1 2 6.9e-06 0.00044 11.9 0.0 28 50 29 51 11 73 0.84 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_25 PF13481.1 194 3.4e-05 15.6 0.1 2 2 0.02 1.3 0.7 0.0 163 188 178 203 168 208 0.71 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_34 - 228 Methyltransf_15 PF09445.5 164 0.00038 12.3 0.0 1 2 0.029 1.9 0.3 0.0 53 79 4 29 2 33 0.91 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 Methyltransf_15 PF09445.5 164 0.00038 12.3 0.0 2 2 4.2e-05 0.0027 9.5 0.0 3 31 166 194 164 209 0.86 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7642ad52-513f-464c-a4a2-b5b3b0321fe2 # Target file: checkm_output/bins/pm325/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm325/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7642ad52-513f-464c-a4a2-b5b3b0321fe2 checkm_output/bins/pm325/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:49 2020 # [ok]