# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_7 - 146 UPF0020 PF01170.13 180 0.00084 11.9 0.0 1 1 1.1e-05 0.0011 11.4 0.0 27 68 82 112 78 138 0.70 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_23 - 965 cobW PF02492.14 178 0.00088 11.7 0.0 1 1 1.7e-05 0.0017 10.7 0.0 5 38 209 241 206 292 0.68 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_1 - 399 MipZ PF09140.6 261 6.1e-06 18.4 0.0 1 2 0.0026 0.27 3.1 0.0 3 50 108 160 106 190 0.73 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_1 - 399 MipZ PF09140.6 261 6.1e-06 18.4 0.0 2 2 2.8e-06 0.00028 12.9 0.0 87 136 230 279 217 302 0.87 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_15 - 185 SSB PF00436.20 104 4.8e-43 138.3 0.5 1 1 5.7e-45 5.8e-43 138.0 0.5 1 100 6 109 6 113 0.95 # 9961 # 10515 # 1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_9 - 864 DUF87 PF01935.12 229 2.5e-05 17.1 0.0 1 1 1.8e-06 9e-05 15.3 0.0 26 213 477 655 474 670 0.64 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 965 DUF87 PF01935.12 229 0.00026 13.8 0.1 1 1 2.5e-05 0.0012 11.5 0.0 11 57 195 237 180 253 0.82 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_22 PF13401.1 131 0.00021 14.4 0.0 1 2 2.1e-05 0.0022 11.1 0.0 8 31 208 231 202 344 0.80 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_22 PF13401.1 131 0.00021 14.4 0.0 2 2 0.076 7.6 -0.4 0.0 88 100 780 796 697 818 0.59 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_7 - 146 N6_N4_Mtase PF01555.13 231 1.2e-25 83.3 0.0 1 2 0.00035 0.035 6.4 0.0 72 114 6 44 1 59 0.79 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 3_7 - 146 N6_N4_Mtase PF01555.13 231 1.2e-25 83.3 0.0 2 2 3.6e-25 3.6e-23 75.1 0.0 169 228 61 120 52 123 0.92 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_23 - 965 AAA_17 PF13207.1 121 0.001 12.8 0.2 1 1 5.2e-05 0.0053 10.5 0.0 3 49 208 259 206 363 0.73 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 MobB PF03205.9 140 0.0011 11.6 0.0 1 1 2.7e-05 0.0027 10.3 0.0 5 33 209 237 206 243 0.86 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 Arch_ATPase PF01637.13 234 6.7e-05 15.6 0.0 1 1 1.7e-06 0.00017 14.2 0.0 27 75 211 253 203 329 0.84 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_16 PF13191.1 185 6.1e-06 19.2 1.4 1 2 4.2e-06 0.00021 14.2 0.0 22 56 202 236 198 264 0.88 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_16 PF13191.1 185 6.1e-06 19.2 1.4 2 2 0.045 2.3 1.1 1.6 88 138 860 917 768 946 0.65 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 AAA_16 PF13191.1 185 0.00015 14.7 0.0 1 1 1.4e-05 0.00068 12.6 0.0 26 56 476 507 461 595 0.86 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 2_16 - 2729 adh_short PF00106.20 167 7.9e-25 80.6 0.0 1 1 2e-26 2e-24 79.3 0.0 2 166 605 777 604 778 0.90 # 20063 # 28249 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.402 1_37 - 323 AAA_13 PF13166.1 712 0.0085 7.4 21.8 1 1 0.00015 0.015 6.6 21.8 287 471 81 282 64 291 0.68 # 31795 # 32763 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.595 3_1 - 399 CbiA PF01656.18 195 2.5e-18 59.1 0.0 1 1 4.8e-20 4.8e-18 58.1 0.0 1 141 108 288 108 325 0.75 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 2_16 - 2729 KR PF08659.5 181 3.1e-34 111.1 0.0 1 1 1e-35 1e-33 109.4 0.0 3 180 606 791 605 792 0.93 # 20063 # 28249 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.402 1_26 - 106 NAD_binding_11 PF14833.1 122 0.00079 12.4 0.0 1 1 1.1e-05 0.0011 12.0 0.0 54 100 28 74 22 80 0.86 # 25418 # 25735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 3_25 - 278 N6_Mtase PF02384.11 311 2e-10 33.1 0.0 1 1 3e-12 3e-10 32.5 0.0 25 117 139 237 130 253 0.84 # 17551 # 18384 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 965 TraG-D_C PF12696.2 128 2.6e-19 62.3 0.0 1 1 4.8e-21 4.9e-19 61.4 0.0 1 126 439 560 439 562 0.83 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_1 - 399 AAA_31 PF13614.1 157 0.00056 12.8 0.0 1 1 3.1e-05 0.0031 10.4 0.0 108 147 232 270 228 276 0.86 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_23 - 965 AAA_33 PF13671.1 143 0.00042 13.1 0.0 1 1 2.6e-05 0.0026 10.6 0.0 3 24 208 229 207 274 0.91 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_7 - 146 Methyltransf_26 PF13659.1 117 6.3e-07 22.4 0.1 1 1 1.8e-08 9e-07 21.9 0.1 4 44 87 126 84 141 0.83 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 3_25 - 278 Methyltransf_26 PF13659.1 117 0.00028 13.8 0.0 1 2 0.048 2.4 1.2 0.0 9 48 28 82 24 149 0.75 # 17551 # 18384 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 3_25 - 278 Methyltransf_26 PF13659.1 117 0.00028 13.8 0.0 2 2 6.2e-05 0.0031 10.5 0.0 3 63 171 238 170 267 0.81 # 17551 # 18384 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_9 - 864 ABC_tran PF00005.22 137 0.00086 12.5 0.0 1 1 2.1e-05 0.0021 11.3 0.0 13 96 476 599 472 614 0.60 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_9 - 864 AAA_10 PF12846.2 304 4.4e-45 147.3 0.0 1 1 1.9e-46 9.5e-45 146.2 0.0 1 291 474 760 474 767 0.89 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 965 AAA_10 PF12846.2 304 3.5e-17 55.6 0.6 1 2 5.7e-18 2.9e-16 52.6 0.1 3 299 206 517 205 520 0.81 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_10 PF12846.2 304 3.5e-17 55.6 0.6 2 2 0.078 3.9 -0.4 0.1 28 116 781 927 774 952 0.44 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 323 DUF3584 PF12128.3 1201 0.0017 8.6 28.3 1 1 2.2e-05 0.0022 8.2 28.3 379 543 76 246 43 282 0.52 # 31795 # 32763 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.595 1_23 - 965 TrwB_AAD_bind PF10412.4 386 3.5e-150 492.7 0.0 1 1 9.6e-152 4.8e-150 492.3 0.0 2 386 191 581 190 581 0.99 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 TrwB_AAD_bind PF10412.4 386 3.8e-05 15.3 0.0 1 1 1.5e-06 7.4e-05 14.4 0.0 16 71 475 536 470 545 0.79 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 3_21 - 383 TIGR00344 TIGR00344 847 1.2e-05 16.2 0.5 1 1 1.8e-07 1.8e-05 15.7 0.5 680 777 161 255 155 269 0.79 # 14614 # 15762 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_23 - 965 T4SS-DNA_transf PF02534.9 469 7.8e-12 37.3 0.0 1 1 1.9e-12 1.9e-10 32.8 0.0 132 395 283 529 270 593 0.73 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_7 - 146 MethyltransfD12 PF02086.10 260 0.00099 11.5 0.0 1 1 1.4e-05 0.0014 11.0 0.0 20 46 83 109 68 117 0.79 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_23 - 965 GTP_EFTU PF00009.22 188 0.00092 11.6 0.0 1 2 0.00069 0.07 5.5 0.0 2 28 203 229 202 251 0.90 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 GTP_EFTU PF00009.22 188 0.00092 11.6 0.0 2 2 0.0027 0.27 3.5 0.0 51 85 354 386 333 394 0.89 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ab949f49-f93b-4f45-8415-fe59037748d8 # Target file: checkm_output/bins/pm324/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm324/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ab949f49-f93b-4f45-8415-fe59037748d8 checkm_output/bins/pm324/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:04:50 2020 # [ok]